ggKbase home page

SCNpilot_cont_1000_bf_scaffold_20_curated

Search features with annotation key words

Displaying items 61-90 of 1002 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_1000_bf_scaffold_20_curated_61
Mesorhizobium loti, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

71563..72915
DNA (1353bp) protein (451aa)
Nitrilotriacetate monooxygenase n=1 Tax=Rhizobium loti (strain MAFF303099) RepID=Q98IR9_RHILO
nitrilotriacetate monooxygenase rbh
Nitrilotriacetate monooxygenase {ECO:0000313|EMBL:BAB49447.1}; TaxID=266835 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Rhizobium loti (strain MAFF303099) (Mesorhizobium loti).;"
SCNpilot_cont_1000_bf_scaffold_20_curated_62
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

72930..73703
DNA (774bp) protein (258aa)
Mll2277 protein n=1 Tax=Rhizobium loti (strain MAFF303099) RepID=Q98IS0_RHILO
Uncharacterized protein {ECO:0000313|EMBL:CDX50213.1}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
hypothetical protein rbh
SCNpilot_cont_1000_bf_scaffold_20_curated_63
Mesorhizobium sp. LSJC269B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

73740..75380
DNA (1641bp) protein (547aa)
Peptide ABC transporter substrate-binding protein n=1 Tax=Mesorhizobium sp. LNJC380A00 RepID=V7GHT8_9RHIZ
Peptide ABC transporter substrate-binding protein {ECO:0000313|EMBL:ESW82345.1}; TaxID=1287326 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSJC269B00.;"
oligopeptide binding protein of oligopeptide ABC transporter; K02035 peptide/nickel transport system substrate-binding protein rbh
SCNpilot_cont_1000_bf_scaffold_20_curated_64
Mesorhizobium loti, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

75377..76348
DNA (972bp) protein (324aa)
Permease protein of oligopeptide ABC transporter n=1 Tax=Rhizobium loti (strain MAFF303099) RepID=Q98IS2_RHILO
peptide ABC transporter permease; K02033 peptide/nickel transport system permease protein rbh
Permease protein of oligopeptide ABC transporter {ECO:0000313|EMBL:BAB49444.1}; TaxID=266835 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Rhizobium loti (strain MAFF303099) (Mesorhizobium loti).;"
SCNpilot_cont_1000_bf_scaffold_20_curated_65
Mesorhizobium loti, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

76345..77226
DNA (882bp) protein (294aa)
Permease protein of oligopeptide ABC transporter n=1 Tax=Rhizobium loti (strain MAFF303099) RepID=Q98IS3_RHILO
peptide ABC transporter permease; K02034 peptide/nickel transport system permease protein rbh
Permease protein of oligopeptide ABC transporter {ECO:0000313|EMBL:BAB49443.1}; TaxID=266835 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Rhizobium loti (strain MAFF303099) (Mesorhizobium loti).;"
SCNpilot_cont_1000_bf_scaffold_20_curated_66
Mesorhizobium ciceri, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(77311..77646)
DNA (336bp) protein (112aa)
Uncharacterized protein n=1 Tax=Mesorhizobium ciceri bv. biserrulae (strain HAMBI 2942 / LMG 23838 / WSM1271) RepID=E8T9T9_MESCW
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADV11911.1}; Flags: Precursor;; TaxID=765698 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium ciceri bv. biserrulae (strain HAMBI 2942 / LMG 23838 /; WSM1271).;"
SCNpilot_cont_1000_bf_scaffold_20_curated_67
Mesorhizobium metallidurans, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

78097..79191
DNA (1095bp) protein (365aa)
Transcriptional regulator, LuxR family n=1 Tax=Mesorhizobium metallidurans STM 2683 RepID=M5EG57_9RHIZ
Transcriptional regulator, LuxR family {ECO:0000313|EMBL:CCV03589.1}; TaxID=1297569 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium metallidurans STM 2683.;"
LuxR family transcriptional regulator
SCNpilot_cont_1000_bf_scaffold_20_curated_68
Devosia insulae, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(79230..80000)
DNA (771bp) protein (257aa)
putative 5-formyltetrahydrofolate cyclo-ligase (EC:6.3.3.2)
Putative 5-formyltetrahydrofolate cyclo-ligase n=1 Tax=mine drainage metagenome RepID=E6PK92_9ZZZZ
5-formyltetrahydrofolate cyclo-ligase {ECO:0000313|EMBL:KKB82355.1}; TaxID=1116389 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia insulae DS-56.;"
SCNpilot_cont_1000_bf_scaffold_20_curated_69
Oceanicola granulosus, Oceanicola, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(80011..81129)
DNA (1119bp) protein (373aa)
hypothetical protein n=1 Tax=Martelella mediterranea RepID=UPI00035D07EB
Sugar ABC transporter, ATP-binding protein {ECO:0000313|EMBL:EAR51291.1}; TaxID=314256 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Oceanicola.;" source="Oceanicola granulosus (strain ATCC BAA-861 / DSM 15982 / KCTC 12143 /; HTCC2516).;"
ABC transporter-like protein; K02052 putative spermidine/putrescine transport system ATP-binding protein
SCNpilot_cont_1000_bf_scaffold_20_curated_70
Devosia insulae, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(81136..81927)
DNA (792bp) protein (264aa)
hypothetical protein n=1 Tax=Martelella mediterranea RepID=UPI0003623D55
Uncharacterized protein {ECO:0000313|EMBL:KKB82208.1}; TaxID=1116389 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia insulae DS-56.;"
opine/polyamine ABC transporter permease; K02053 putative spermidine/putrescine transport system permease protein
SCNpilot_cont_1000_bf_scaffold_20_curated_71
Devosia epidermidihirudinis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(81924..82772)
DNA (849bp) protein (283aa)
hypothetical protein n=1 Tax=Martelella mediterranea RepID=UPI00037B27A7
Uncharacterized protein {ECO:0000313|EMBL:KKC35014.1}; TaxID=1293439 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia epidermidihirudinis.;"
putative permease component of ABC transporter; K02054 putative spermidine/putrescine transport system permease protein
SCNpilot_cont_1000_bf_scaffold_20_curated_72
Devosia insulae, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(83030..84067)
DNA (1038bp) protein (346aa)
hypothetical protein n=1 Tax=Martelella mediterranea RepID=UPI00036B40E5
Uncharacterized protein {ECO:0000313|EMBL:KKB82210.1}; TaxID=1116389 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia insulae DS-56.;"
ABC transporter substrate-binding protein; K02055 putative spermidine/putrescine transport system substrate-binding protein
SCNpilot_cont_1000_bf_scaffold_20_curated_73
Devosia epidermidihirudinis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(84193..85167)
DNA (975bp) protein (325aa)
hypothetical protein n=1 Tax=Martelella mediterranea RepID=UPI000361D589
Uncharacterized protein {ECO:0000313|EMBL:KKC35012.1}; TaxID=1293439 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia epidermidihirudinis.;"
LysR family transcriptional regulator
SCNpilot_cont_1000_bf_scaffold_20_curated_74
Mesorhizobium opportunistum, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(85329..85766)
DNA (438bp) protein (146aa)
Uncharacterized protein n=1 Tax=Mesorhizobium opportunistum (strain LMG 24607 / HAMBI 3007 / WSM2075) RepID=F7YCW3_MESOW
hypothetical protein; K09706 hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEH90070.1}; TaxID=536019 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium opportunistum (strain LMG 24607 / HAMBI 3007 / WSM2075).;"
SCNpilot_cont_1000_bf_scaffold_20_curated_75
Mesorhizobium sp. LNHC221B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(85763..86353)
DNA (591bp) protein (197aa)
UPI0003CE54AF related cluster n=1 Tax=unknown RepID=UPI0003CE54AF
Biotin biosynthesis protein BioY {ECO:0000313|EMBL:ESY78625.1}; TaxID=1287233 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC221B00.;"
hypothetical protein; K03523 putative biotin biosynthesis protein BioY rbh
SCNpilot_cont_1000_bf_scaffold_20_curated_76
Mesorhizobium sp. LNHC252B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(86721..87386)
DNA (666bp) protein (222aa)
UPI0003CF8A73 related cluster n=1 Tax=unknown RepID=UPI0003CF8A73
GntR family transcriptional regulator {ECO:0000313|EMBL:ESY73282.1}; TaxID=1287252 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC252B00.;"
GntR family transcriptional regulator
SCNpilot_cont_1000_bf_scaffold_20_curated_77
Mesorhizobium loti, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(87559..88575)
DNA (1017bp) protein (339aa)
UPI0003CEEA88 related cluster n=1 Tax=unknown RepID=UPI0003CEEA88
Geranylgeranyl pyrophosphate synthase {ECO:0000313|EMBL:ETA71874.1}; TaxID=935547 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium loti R7A.;"
geranylgeranyl pyrophosphate synthase
SCNpilot_cont_1000_bf_scaffold_20_curated_78
Mesorhizobium sp. LNHC232B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

88951..89175
DNA (225bp) protein (75aa)
Uncharacterized protein n=1 Tax=Mesorhizobium opportunistum (strain LMG 24607 / HAMBI 3007 / WSM2075) RepID=F7YCW7_MESOW
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ESY69884.1}; TaxID=1287243 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC232B00.;"
SCNpilot_cont_1000_bf_scaffold_20_curated_79
Mesorhizobium metallidurans, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

89172..89969
DNA (798bp) protein (266aa)
Uncharacterized protein n=1 Tax=Mesorhizobium metallidurans STM 2683 RepID=M5EGS7_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:CCV03582.1}; TaxID=1297569 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium metallidurans STM 2683.;"
putative O-methyltransferase
SCNpilot_cont_1000_bf_scaffold_20_curated_80
Mesorhizobium sp. LNHC232B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

90016..91038
DNA (1023bp) protein (341aa)
Peptidase S49 n=1 Tax=Mesorhizobium opportunistum (strain LMG 24607 / HAMBI 3007 / WSM2075) RepID=F7YCW9_MESOW
peptidase S49
Peptidase S49 {ECO:0000313|EMBL:ESY69886.1}; TaxID=1287243 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC232B00.;"
SCNpilot_cont_1000_bf_scaffold_20_curated_81
Mesorhizobium amorphae, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

91217..91402
DNA (186bp) protein (62aa)
Msl7423 protein n=1 Tax=Rhizobium loti (strain MAFF303099) RepID=Q986C5_RHILO
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:EHH11713.1}; TaxID=1082933 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium amorphae CCNWGS0123.;"
SCNpilot_cont_1000_bf_scaffold_20_curated_82
Mesorhizobium sp. STM 4661, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

91429..92307
DNA (879bp) protein (293aa)
4-diphosphocytidyl-2-C-methyl-D-erythritol kinase {ECO:0000256|HAMAP-Rule:MF_00061, ECO:0000256|SAAS:SAAS00090350}; Short=CMK {ECO:0000256|HAMAP-Rule:MF_00061};; EC=2.7.1.148 {ECO:0000256|HAMAP-Rule:MF_00061, ECO:0000256|SAAS:SAAS00090262};; 4-(cytidine-5'-diphospho)-2-C-methyl-D-erythritol kinase {ECO:0000256|HAMAP-Rule:MF_00061}; TaxID=1297570 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. STM 4661.;"
4-diphosphocytidyl-2-C-methyl-D-erythritol kinase (EC:2.7.1.148); K00919 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase [EC:2.7.1.148]
4-diphosphocytidyl-2-C-methyl-D-erythritol kinase n=1 Tax=Mesorhizobium sp. STM 4661 RepID=M5F7M8_9RHIZ
SCNpilot_cont_1000_bf_scaffold_20_curated_83
Mesorhizobium sp. LNHC232B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

92428..92976
DNA (549bp) protein (183aa)
UPI0003CF5603 related cluster n=1 Tax=unknown RepID=UPI0003CF5603
Molybdenum cofactor biosynthesis protein B {ECO:0000256|PIRNR:PIRNR006443}; TaxID=1287243 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC232B00.;"
molybdenum cofactor biosynthesis protein B; K03638 molybdenum cofactor biosynthesis protein B
SCNpilot_cont_1000_bf_scaffold_20_curated_84
Rhodobacter sp. CACIA14H1, Rhodobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(92979..94619)
DNA (1641bp) protein (547aa)
hypothetical protein n=1 Tax=Rhizobium loti RepID=UPI0003797BFF
Gluconate dehydrogenase {ECO:0000313|EMBL:ESW60328.1}; TaxID=1408890 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodobacter.;" source="Rhodobacter sp. CACIA14H1.;"
gluconate dehydrogenase
SCNpilot_cont_1000_bf_scaffold_20_curated_85
Verrucosispora maris, Verrucosispora, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(94609..95250)
DNA (642bp) protein (214aa)
hypothetical protein; K06152 gluconate 2-dehydrogenase gamma chain [EC:1.1.99.3]
hypothetical protein n=1 Tax=Rhizobium loti RepID=UPI000365CE7C
Uncharacterized protein {ECO:0000313|EMBL:AEB44419.1}; TaxID=263358 species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Verrucosispora.;" source="Verrucosispora maris (strain AB-18-032).;"
SCNpilot_cont_1000_bf_scaffold_20_curated_86
Vibrio nigripulchritudo, Vibrio, Vibrionales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(95293..96252)
DNA (960bp) protein (320aa)
Monosaccharide-transporting ATPase {ECO:0000313|EMBL:CCN44380.1}; EC=3.6.3.17 {ECO:0000313|EMBL:CCN44380.1};; TaxID=1238441 species="Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Vibrio.;" source="Vibrio nigripulchritudo FTn2.;"
monosaccharide-transporting ATPase (EC:3.6.3.17); K10440 ribose transport system permease protein
ABC transporter permease n=1 Tax=Rhizobium loti RepID=UPI000375BC0E
SCNpilot_cont_1000_bf_scaffold_20_curated_87
Loktanella cinnabarina, Loktanella, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(96249..97829)
DNA (1581bp) protein (527aa)
ABC transporter; K10441 ribose transport system ATP-binding protein [EC:3.6.3.17]
hypothetical protein n=1 Tax=Rhizobium loti RepID=UPI0003650397
Ribose ABC transport system, ATP-binding protein RbsA {ECO:0000313|EMBL:GAD57262.1}; TaxID=1337093 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Loktanella.;" source="Loktanella cinnabarina LL-001.;"
SCNpilot_cont_1000_bf_scaffold_20_curated_88
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(97826..98944)
DNA (1119bp) protein (373aa)
hypothetical protein n=1 Tax=Rhizobium loti RepID=UPI00036C8DBB
Sugar ABC transporter periplasmic protein {ECO:0000313|EMBL:CDX35849.1}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
sugar ABC transporter periplasmic protein; K10439 ribose transport system substrate-binding protein
SCNpilot_cont_1000_bf_scaffold_20_curated_89
RHI_Rhodobacterales_62_75, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(98989..99816)
DNA (828bp) protein (276aa)
xylose isomerase; K03335 inosose dehydratase [EC:4.2.1.44]
hypothetical protein n=1 Tax=Rhizobium loti RepID=UPI000379B402
Tax=RIFCSPHIGHO2_12_FULL_Rhodobacterales_62_75_curated
SCNpilot_cont_1000_bf_scaffold_20_curated_90
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

99944..101344
DNA (1401bp) protein (467aa)
hypothetical protein n=1 Tax=Rhizobium loti RepID=UPI00037796F7
Transcriptional regulator/sugar kinase {ECO:0000313|EMBL:CDX35855.1}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
transcriptional regulator/sugar kinase
Displaying items 61-90 of 1002 in total

View Taxonomy