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SCNpilot_expt_1000_bf_scaffold_1291_curated

Search features with annotation key words

Displaying items 1-30 of 103 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_1291_curated_1
Microbacterium azadirachtae, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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1..726
DNA (726bp) protein (242aa)
30S ribosomal protein S1 n=1 Tax=Microbacterium sp. UCD-TDU RepID=UPI000349089A
Uncharacterized protein {ECO:0000313|EMBL:KJL17452.1}; TaxID=582680 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium azadirachtae.;"
rpsA; 30S ribosomal protein S1; K02945 small subunit ribosomal protein S1
SCNpilot_expt_1000_bf_scaffold_1291_curated_2
Microbacterium maritypicum, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

843..1442
DNA (600bp) protein (200aa)
Dephospho-CoA kinase {ECO:0000256|HAMAP-Rule:MF_00376}; EC=2.7.1.24 {ECO:0000256|HAMAP-Rule:MF_00376};; Dephosphocoenzyme A kinase {ECO:0000256|HAMAP-Rule:MF_00376}; TaxID=1333857 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium maritypicum MF109.;"
dephospho-CoA kinase; K00859 dephospho-CoA kinase [EC:2.7.1.24]
hypothetical protein n=1 Tax=Microbacterium barkeri RepID=UPI0002D880B6
SCNpilot_expt_1000_bf_scaffold_1291_curated_3
Microbacterium sp. UCD-TDU, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

1439..2629
DNA (1191bp) protein (397aa)
hypothetical protein n=1 Tax=Microbacterium sp. UCD-TDU RepID=UPI000344B526
Major facilitator transporter {ECO:0000313|EMBL:EYT58910.1}; TaxID=1247714 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. UCD-TDU.;"
permease of the major facilitator superfamily
SCNpilot_expt_1000_bf_scaffold_1291_curated_4
Microbacterium sp. MEJ108Y, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(2636..3235)
DNA (600bp) protein (200aa)
Uncharacterized protein n=1 Tax=Microbacterium sp. oral taxon 186 str. F0373 RepID=S3AAA5_9MICO
Contig_34, whole genome shotgun sequence {ECO:0000313|EMBL:KIP88922.1}; TaxID=1587523 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. MEJ108Y.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1291_curated_5
Microbacterium azadirachtae, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

3317..5386
DNA (2070bp) protein (690aa)
excinuclease ABC subunit B n=1 Tax=Microbacterium barkeri RepID=UPI0002EA9934
UvrABC system protein B {ECO:0000256|HAMAP-Rule:MF_00204, ECO:0000256|RuleBase:RU003587}; Short=Protein UvrB {ECO:0000256|HAMAP-Rule:MF_00204};; Excinuclease ABC subunit B {ECO:0000256|HAMAP-Rule:MF_00204}; TaxID=582680 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium azadirachtae.;"
uvrB; helicase subunit of the DNA excision repair complex; K03702 excinuclease ABC subunit B
SCNpilot_expt_1000_bf_scaffold_1291_curated_6
Microbacterium sp. CH12i, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(5448..5690)
DNA (243bp) protein (81aa)
hypothetical protein n=1 Tax=Microbacterium barkeri RepID=UPI00037BA5D3
Type IV secretion protein Rhs {ECO:0000313|EMBL:KDA06293.1}; TaxID=1479651 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. CH12i.;"
rhs family protein
SCNpilot_expt_1000_bf_scaffold_1291_curated_7
Microbacterium oxydans, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

5735..6172
DNA (438bp) protein (146aa)
Uncharacterized protein n=1 Tax=Microbacterium maritypicum MF109 RepID=T5KAU5_9MICO
Organic hydroperoxide resistance transcriptional regulator {ECO:0000313|EMBL:KJL27601.1}; TaxID=82380 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium oxydans.;"
transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_1291_curated_8
Microbacterium foliorum, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

6224..6997
DNA (774bp) protein (258aa)
hypothetical protein n=1 Tax=Microbacterium sp. UCD-TDU RepID=UPI0003600228
Uncharacterized protein {ECO:0000313|EMBL:KJL22694.1}; TaxID=104336 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium foliorum.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1291_curated_9
Microbacterium foliorum, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

6994..7524
DNA (531bp) protein (177aa)
hypothetical protein n=1 Tax=Microbacterium barkeri RepID=UPI00031FB434
Uncharacterized protein {ECO:0000313|EMBL:KJL22695.1}; TaxID=104336 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium foliorum.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1291_curated_10
Microbacterium sp. MEJ108Y, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

7521..8486
DNA (966bp) protein (322aa)
ATPase; K03924 MoxR-like ATPase [EC:3.6.3.-]
hypothetical protein n=1 Tax=Microbacterium sp. 292MF RepID=UPI00037DB8AD
Contig_34, whole genome shotgun sequence {ECO:0000313|EMBL:KIP88917.1}; TaxID=1587523 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. MEJ108Y.;"
SCNpilot_expt_1000_bf_scaffold_1291_curated_11
Microbacterium foliorum, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

8490..9779
DNA (1290bp) protein (430aa)
Uncharacterized protein n=1 Tax=Microbacterium maritypicum MF109 RepID=T5KFJ2_9MICO
Uncharacterized protein {ECO:0000313|EMBL:KJL22697.1}; TaxID=104336 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium foliorum.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1291_curated_12
Microbacterium sp. MEJ108Y, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

9776..10306
DNA (531bp) protein (177aa)
Uncharacterized protein n=1 Tax=Actinosynnema mirum (strain ATCC 29888 / DSM 43827 / NBRC 14064 / IMRU 3971) RepID=C6WKP5_ACTMD
Contig_34, whole genome shotgun sequence {ECO:0000313|EMBL:KIP88915.1}; TaxID=1587523 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. MEJ108Y.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1291_curated_13
Microbacterium oxydans, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

10489..13323
DNA (2835bp) protein (945aa)
excinuclease ABC subunit A n=1 Tax=Microbacterium barkeri RepID=UPI000316C87B
UvrABC system protein A {ECO:0000256|HAMAP-Rule:MF_00205, ECO:0000256|SAAS:SAAS00088996}; Short=UvrA protein {ECO:0000256|HAMAP-Rule:MF_00205};; Excinuclease ABC subunit A {ECO:0000256|HAMAP-Rule:MF_00205}; TaxID=82380 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium oxydans.;"
uvrA; excinuclease ATPase subunit; K03701 excinuclease ABC subunit A
SCNpilot_expt_1000_bf_scaffold_1291_curated_14
Microbacterium sp. MEJ108Y, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

13323..15251
DNA (1929bp) protein (643aa)
UvrABC system protein C n=1 Tax=Microbacterium maritypicum MF109 RepID=T5KBL4_9MICO
UvrABC system protein C {ECO:0000256|HAMAP-Rule:MF_00203, ECO:0000256|SAAS:SAAS00088139}; Short=Protein UvrC {ECO:0000256|HAMAP-Rule:MF_00203};; Excinuclease ABC subunit C {ECO:0000256|HAMAP-Rule:MF_00203}; TaxID=1587523 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. MEJ108Y.;"
uvrC; nuclease subunit of the excinuclease complex; K03703 excinuclease ABC subunit C
SCNpilot_expt_1000_bf_scaffold_1291_curated_15
Microbacterium sp. UCD-TDU, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

15280..16152
DNA (873bp) protein (291aa)
hypothetical protein n=1 Tax=Microbacterium barkeri RepID=UPI0002D8A971
Nucleotide-binding protein D514_0108720 {ECO:0000256|HAMAP-Rule:MF_00636}; TaxID=1247714 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. UCD-TDU.;"
P-loop-containing kinase; K06958 UPF0042 nucleotide-binding protein
SCNpilot_expt_1000_bf_scaffold_1291_curated_16
Microbacterium sp. MEJ108Y, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

16239..17306
DNA (1068bp) protein (356aa)
Putative sporulation transcription regulator WhiA n=1 Tax=Microbacterium maritypicum MF109 RepID=T5KFI7_9MICO
Putative sporulation transcription regulator WhiA {ECO:0000256|HAMAP-Rule:MF_01420}; TaxID=1587523 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. MEJ108Y.;"
hypothetical protein; K09762 hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1291_curated_17
Microbacterium azadirachtae, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

17384..18010
DNA (627bp) protein (209aa)
Superoxide dismutase {ECO:0000256|RuleBase:RU000414}; EC=1.15.1.1 {ECO:0000256|RuleBase:RU000414};; TaxID=582680 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium azadirachtae.;"
superoxide dismutase n=1 Tax=Microbacterium sp. UCD-TDU RepID=UPI0003459294
superoxide dismutase
SCNpilot_expt_1000_bf_scaffold_1291_curated_18
Microbacterium mangrovi, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

18111..19121
DNA (1011bp) protein (337aa)
Glyceraldehyde-3-phosphate dehydrogenase {ECO:0000256|RuleBase:RU361160}; EC=1.2.1.- {ECO:0000256|RuleBase:RU361160};; TaxID=1348253 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium mangrovi.;"
gap; glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase; K00134 glyceraldehyde 3-phosphate dehydrogenase [EC:1.2.1.12]
glyceraldehyde-3-phosphate dehydrogenase n=1 Tax=Microbacterium sp. 292MF RepID=UPI000367829C
SCNpilot_expt_1000_bf_scaffold_1291_curated_19
Microbacterium foliorum, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

19132..20346
DNA (1215bp) protein (405aa)
Phosphoglycerate kinase {ECO:0000256|HAMAP-Rule:MF_00145, ECO:0000256|RuleBase:RU000532}; EC=2.7.2.3 {ECO:0000256|HAMAP-Rule:MF_00145, ECO:0000256|RuleBase:RU000532};; TaxID=104336 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium foliorum.;"
pgk; 3-phosphoglycerate kinase; K00927 phosphoglycerate kinase [EC:2.7.2.3]
phosphoglycerate kinase n=1 Tax=Microbacterium sp. UCD-TDU RepID=UPI00034AD35B
SCNpilot_expt_1000_bf_scaffold_1291_curated_20
Microbacterium sp. CH12i, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

20337..21128
DNA (792bp) protein (264aa)
Triosephosphate isomerase {ECO:0000256|HAMAP-Rule:MF_00147, ECO:0000256|RuleBase:RU000517}; Short=TIM {ECO:0000256|HAMAP-Rule:MF_00147};; EC=5.3.1.1 {ECO:0000256|HAMAP-Rule:MF_00147, ECO:0000256|RuleBase:RU000517};; Triose-phosphate isomerase {ECO:0000256|HAMAP-Rule:MF_00147}; TaxID=1479651 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. CH12i.;"
tpiA; triosephosphate isomerase; K01803 triosephosphate isomerase (TIM) [EC:5.3.1.1]
Triosephosphate isomerase n=1 Tax=Microbacterium maritypicum MF109 RepID=T5KDK3_9MICO
SCNpilot_expt_1000_bf_scaffold_1291_curated_21
BJP_08E140C01_10KDA_Microbacterium_68_10, Microbacterium, Actinomycetales, Actinobacteridae, Actinobacteria, Bacteria

Not on your lists

21125..21460
DNA (336bp) protein (112aa)
Preprotein translocase, SecG subunit n=2 Tax=Microbacterium RepID=H8E2S4_9MICO
secG; preprotein translocase subunit SecG; K03075 preprotein translocase subunit SecG
Tax=BJP_08E140C01_10KDA_Microbacterium_68_10
SCNpilot_expt_1000_bf_scaffold_1291_curated_22
Microbacterium sp. UCD-TDU, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

21460..21816
DNA (357bp) protein (119aa)
RNA polymerase-binding protein RbpA n=1 Tax=Microbacterium maritypicum MF109 RepID=T5KAT0_9MICO
RNA polymerase-binding protein RbpA {ECO:0000256|HAMAP-Rule:MF_01483}; TaxID=1247714 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. UCD-TDU.;"
electron transport protein
SCNpilot_expt_1000_bf_scaffold_1291_curated_23
unknown

Not on your lists

comp(21912..22418)
DNA (507bp) protein (169aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1291_curated_24
Arthrobacter crystallopoietes, Arthrobacter, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(22415..23614)
DNA (1200bp) protein (400aa)
hypothetical protein; K13280 signal peptidase, endoplasmic reticulum-type [EC:3.4.-.-]
hypothetical protein n=1 Tax=Pseudoclavibacter faecalis RepID=UPI0003663CD1
Uncharacterized protein {ECO:0000313|EMBL:EMY34301.1}; TaxID=1246476 species="Bacteria; Actinobacteria; Micrococcales; Micrococcaceae; Arthrobacter.;" source="Arthrobacter crystallopoietes BAB-32.;"
SCNpilot_expt_1000_bf_scaffold_1291_curated_25
Micromonospora sp. M42, Micromonospora, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(23619..24167)
DNA (549bp) protein (183aa)
Uncharacterized protein {ECO:0000313|EMBL:EWM64959.1}; TaxID=457406 species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Micromonospora.;" source="Micromonospora sp. M42.;"
SCNpilot_expt_1000_bf_scaffold_1291_curated_26
Leifsonia xyli, Leifsonia, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(24257..24811)
DNA (555bp) protein (185aa)
hypothetical protein n=1 Tax=Leucobacter chromiiresistens RepID=UPI0002629C22
ABC transporter sugar binding protein
Uncharacterized protein {ECO:0000313|EMBL:AGW40430.1}; TaxID=1389489 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Leifsonia.;" source="Leifsonia xyli subsp. cynodontis DSM 46306.;"
SCNpilot_expt_1000_bf_scaffold_1291_curated_27
Frankia sp. EAN1pec, Frankia, Frankiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(25135..26322)
DNA (1188bp) protein (396aa)
Integrase family protein n=1 Tax=Frankia sp. (strain EAN1pec) RepID=A8L4S3_FRASN
integrase family protein
Integrase family protein {ECO:0000313|EMBL:ABW14888.1}; TaxID=298653 species="Bacteria; Actinobacteria; Frankiales; Frankiaceae; Frankia.;" source="Frankia sp. (strain EAN1pec).;"
SCNpilot_expt_1000_bf_scaffold_1291_curated_28
unknown

Not on your lists

comp(26322..26729)
DNA (408bp) protein (136aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1291_curated_29
Microbacterium sp. UCD-TDU, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(26726..27208)
DNA (483bp) protein (161aa)
hypothetical protein n=1 Tax=Microbacterium sp. UCD-TDU RepID=UPI0003450D5D
Uncharacterized protein {ECO:0000313|EMBL:EYT59470.1}; TaxID=1247714 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. UCD-TDU.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1291_curated_30
Leucobacter sp. UCD-THU, Leucobacter, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(27205..27648)
DNA (444bp) protein (148aa)
hypothetical protein n=1 Tax=Leucobacter sp. UCD-THU RepID=UPI000363B807
Uncharacterized protein {ECO:0000313|EMBL:EYT56247.1}; TaxID=1292023 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Leucobacter.;" source="Leucobacter sp. UCD-THU.;"
hypothetical protein
Displaying items 1-30 of 103 in total

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