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SCNpilot_expt_1000_bf_scaffold_1484_curated

Search features with annotation key words

Displaying items 1-30 of 105 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_1484_curated_1
Dermacoccus sp. Ellin185, Dermacoccus, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(2..232)
DNA (231bp) protein (77aa)
Integrase core domain protein n=1 Tax=Dermacoccus sp. Ellin185 RepID=E3BD31_9MICO
Integrase core domain protein {ECO:0000313|EMBL:EFP57042.1}; TaxID=188626 species="Bacteria; Actinobacteria; Micrococcales; Dermacoccaceae; Dermacoccus.;" source="Dermacoccus sp. Ellin185.;"
integrase catalytic subunit
SCNpilot_expt_1000_bf_scaffold_1484_curated_2
Microbacterium azadirachtae, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(193..921)
DNA (729bp) protein (243aa)
transposase IS401 n=1 Tax=Leucobacter sp. UCD-THU RepID=UPI0003635C47
Integrase core domain protein {ECO:0000313|EMBL:KJL29939.1}; TaxID=582680 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium azadirachtae.;"
transposase
SCNpilot_expt_1000_bf_scaffold_1484_curated_3
Microbacterium azadirachtae, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(918..1232)
DNA (315bp) protein (105aa)
Probable transposase n=1 Tax=marine actinobacterium PHSC20C1 RepID=A4AJY1_9ACTN
Transposase {ECO:0000313|EMBL:KJL29938.1}; TaxID=582680 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium azadirachtae.;"
transposase
SCNpilot_expt_1000_bf_scaffold_1484_curated_4
Gordonia paraffinivorans, Gordonia, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(1495..2271)
DNA (777bp) protein (259aa)
Methionine aminopeptidase {ECO:0000256|HAMAP-Rule:MF_01974}; Short=MAP {ECO:0000256|HAMAP-Rule:MF_01974};; Short=MetAP {ECO:0000256|HAMAP-Rule:MF_01974};; EC=3.4.11.18 {ECO:0000256|HAMAP-Rule:MF_01974};; Peptidase M {ECO:0000256|HAMAP-Rule:MF_01974}; TaxID=1223543 species="Bacteria; Actinobacteria; Corynebacteriales; Gordoniaceae; Gordonia.;" source="Gordonia paraffinivorans NBRC 108238.;"
methionine aminopeptidase; K01265 methionyl aminopeptidase [EC:3.4.11.18]
Methionine aminopeptidase n=1 Tax=Gordonia paraffinivorans NBRC 108238 RepID=M3V7N7_9ACTO
SCNpilot_expt_1000_bf_scaffold_1484_curated_5
Gordonia paraffinivorans, Gordonia, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

2340..2636
DNA (297bp) protein (99aa)
Putative Xre family DNA-binding protein n=1 Tax=Gordonia paraffinivorans NBRC 108238 RepID=M3TXB8_9ACTO
Putative Xre family DNA-binding protein {ECO:0000313|EMBL:GAC86286.1}; TaxID=1223543 species="Bacteria; Actinobacteria; Corynebacteriales; Gordoniaceae; Gordonia.;" source="Gordonia paraffinivorans NBRC 108238.;"
helix-turn-helix domain-containing protein
SCNpilot_expt_1000_bf_scaffold_1484_curated_6
Amycolatopsis rifamycinica, Amycolatopsis, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(2671..3642)
DNA (972bp) protein (324aa)
AraC family transcriptional regulator n=1 Tax=Curtobacterium ginsengisoli RepID=UPI0003B3B119
AraC family transcriptional regulator {ECO:0000313|EMBL:KDN22466.1}; TaxID=287986 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Amycolatopsis.;" source="Amycolatopsis rifamycinica.;"
AraC family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_1484_curated_7
Streptomyces sp. AA4, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

4508..4825
DNA (318bp) protein (106aa)
Putative uncharacterized protein n=1 Tax=Streptomyces sp. AA4 RepID=D9VDJ0_9ACTO
Putative uncharacterized protein {ECO:0000313|EMBL:EFL10054.1}; TaxID=591158 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces sp. AA4.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1484_curated_8
Verrucosispora maris, Verrucosispora, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

4905..6173
DNA (1269bp) protein (423aa)
ABC transporter ATP-binding protein n=1 Tax=Curtobacterium ginsengisoli RepID=UPI0003B6E76A
ABC transporter; K09687 antibiotic transport system ATP-binding protein
ABC transporter related protein {ECO:0000313|EMBL:AEB45332.1}; TaxID=263358 species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Verrucosispora.;" source="Verrucosispora maris (strain AB-18-032).;"
SCNpilot_expt_1000_bf_scaffold_1484_curated_9
unknown

Not on your lists

6170..6952
DNA (783bp) protein (261aa)
hypothetical protein n=1 Tax=Curtobacterium ginsengisoli RepID=UPI0003B3D9B7
ABC transporter
SCNpilot_expt_1000_bf_scaffold_1484_curated_10
Arthrobacter globiformis, Arthrobacter, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

6952..8172
DNA (1221bp) protein (407aa)
dyp-type peroxidase family protein; K15733 dye decolorizing peroxidase [EC:1.11.1.19]
peroxidase n=1 Tax=Curtobacterium ginsengisoli RepID=UPI0003B64B18
Uncharacterized protein {ECO:0000313|EMBL:ACL11851.1}; TaxID=1665 species="Bacteria; Actinobacteria; Micrococcales; Micrococcaceae; Arthrobacter.;" source="Arthrobacter globiformis.;"
SCNpilot_expt_1000_bf_scaffold_1484_curated_11
Blastococcus saxobsidens, Blastococcus, Geodermatophilales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

8280..8753
DNA (474bp) protein (158aa)
hypothetical protein n=1 Tax=Curtobacterium ginsengisoli RepID=UPI0003B42026
putative lipoprotein
Putative lipoprotein {ECO:0000313|EMBL:CCG01658.1}; TaxID=1146883 species="Bacteria; Actinobacteria; Geodermatophilales; Geodermatophilaceae; Blastococcus.;" source="Blastococcus saxobsidens (strain DD2).;"
SCNpilot_expt_1000_bf_scaffold_1484_curated_12
Nocardia asteroides, Nocardia, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

8768..9217
DNA (450bp) protein (150aa)
hypothetical protein n=1 Tax=Rhodococcus RepID=UPI00036A529F
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:GAD86727.1}; TaxID=1110697 species="Bacteria; Actinobacteria; Corynebacteriales; Nocardiaceae; Nocardia.;" source="Nocardia asteroides NBRC 15531.;"
SCNpilot_expt_1000_bf_scaffold_1484_curated_13
Mycobacterium phlei, Mycobacterium, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

9291..10127
DNA (837bp) protein (279aa)
transposase n=1 Tax=Curtobacterium ginsengisoli RepID=UPI0003B771B8
Transposase {ECO:0000313|EMBL:EID11105.1}; TaxID=1150599 species="Bacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium.;" source="Mycobacterium phlei RIVM601174.;"
transposase
SCNpilot_expt_1000_bf_scaffold_1484_curated_14
Mycobacterium phlei, Mycobacterium, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

10111..10575
DNA (465bp) protein (155aa)
Transposase n=2 Tax=Mycobacterium RepID=I0RJ02_MYCPH
Transposase {ECO:0000313|EMBL:EID11105.1}; TaxID=1150599 species="Bacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium.;" source="Mycobacterium phlei RIVM601174.;"
transposase
SCNpilot_expt_1000_bf_scaffold_1484_curated_15
Kutzneria albida, Kutzneria, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(11137..12555)
DNA (1419bp) protein (473aa)
Putative branched-chain amino acid ABC transporter n=1 Tax=Arthrobacter aurescens (strain TC1) RepID=A1RDI4_ARTAT
Uncharacterized protein {ECO:0000313|EMBL:AHH99837.1}; TaxID=1449976 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Kutzneria.;" source="Kutzneria albida DSM 43870.;"
putative branched-chain amino acid ABC transporter; K01999 branched-chain amino acid transport system substrate-binding protein
SCNpilot_expt_1000_bf_scaffold_1484_curated_16
Pseudonocardia dioxanivorans, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(12559..12867)
DNA (309bp) protein (103aa)
Regulatory protein ArsR n=1 Tax=Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM 13855 / CB1190) RepID=F4CKM7_PSEUX
ArsR family transcriptional regulator
Regulatory protein ArsR {ECO:0000313|EMBL:AEA23234.1}; TaxID=675635 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Pseudonocardia.;" source="Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM; 13855 / CB1190).;"
SCNpilot_expt_1000_bf_scaffold_1484_curated_17
Selaginella moellendorffii, Selaginella, Selaginellales, Lycopodiidae, Streptophyta, Viridiplantae

Not on your lists

comp(12881..13906)
DNA (1026bp) protein (342aa)
Putative uncharacterized protein n=1 Tax=Selaginella moellendorffii RepID=D8T1P7_SELML
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:EFJ09424.1}; TaxID=88036 species="Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella.;" source="Selaginella moellendorffii (Spikemoss).;"
SCNpilot_expt_1000_bf_scaffold_1484_curated_18
Saccharothrix espanaensis, Saccharothrix, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(13903..15273)
DNA (1371bp) protein (457aa)
Putative indoleacetamide hydrolase n=1 Tax=Saccharothrix espanaensis (strain ATCC 51144 / DSM 44229 / JCM 9112 / NBRC 15066 / NRRL 15764) RepID=K0K2X6_SACES
putative indoleacetamide hydrolase
Putative indoleacetamide hydrolase {ECO:0000313|EMBL:CCH31224.1}; TaxID=1179773 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Saccharothrix.;" source="Saccharothrix espanaensis (strain ATCC 51144 / DSM 44229 / JCM 9112 /; NBRC 15066 / NRRL 15764).;"
SCNpilot_expt_1000_bf_scaffold_1484_curated_19
Gordonia alkanivorans, Gordonia, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

15401..16708
DNA (1308bp) protein (436aa)
Cytosine permease n=1 Tax=Gordonia alkanivorans NBRC 16433 RepID=F9W161_9ACTO
Cytosine permease {ECO:0000313|EMBL:GAA14600.1}; TaxID=1027371 species="Bacteria; Actinobacteria; Corynebacteriales; Gordoniaceae; Gordonia.;" source="Gordonia alkanivorans NBRC 16433.;"
permease for cytosine/purines uracil thiamine allantoin
SCNpilot_expt_1000_bf_scaffold_1484_curated_20
Streptomyces hygroscopicus, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(16763..17503)
DNA (741bp) protein (247aa)
Hydrolase n=2 Tax=Streptomyces hygroscopicus subsp. jinggangensis RepID=H2JY01_STRHJ
hydrolase
Hydrolase {ECO:0000313|EMBL:AEY86358.1}; TaxID=1133850 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces hygroscopicus subsp. jinggangensis (strain 5008).;"
SCNpilot_expt_1000_bf_scaffold_1484_curated_21
Streptomyces sp. HPH0547, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

17634..18449
DNA (816bp) protein (272aa)
Uncharacterized protein n=1 Tax=Streptomyces sp. HPH0547 RepID=S3C3S4_9ACTO
Uncharacterized protein {ECO:0000313|EMBL:EPD95534.1}; TaxID=1203592 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces sp. HPH0547.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1484_curated_22
unknown

Not on your lists

comp(18457..18564)
DNA (108bp) protein (36aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1484_curated_23
unknown

Not on your lists

18700..18888
DNA (189bp) protein (63aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1484_curated_24
RBG_16_Acidobacteria_64_8_curated, Acidobacteria, Bacteria

Not on your lists

comp(18901..19755)
DNA (855bp) protein (285aa)
transposase IS401 n=1 Tax=Actinomycetospora chiangmaiensis RepID=UPI0003602B30
integrase catalytic subunit
Tax=RBG_16_Acidobacteria_64_8_curated
SCNpilot_expt_1000_bf_scaffold_1484_curated_25
Microbacterium sp. C448, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

19799..21307
DNA (1509bp) protein (503aa)
type VI secretion protein n=1 Tax=Curtobacterium ginsengisoli RepID=UPI0003B454F5
Uncharacterized protein {ECO:0000313|EMBL:CDJ99363.1}; TaxID=1177594 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. C448.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1484_curated_26
Microbacterium sp. C448, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

21363..21836
DNA (474bp) protein (158aa)
single-stranded DNA-binding protein n=1 Tax=Curtobacterium ginsengisoli RepID=UPI0003B38AD4
Single-stranded DNA-binding protein {ECO:0000256|PIRNR:PIRNR002070}; TaxID=1177594 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. C448.;"
single-stranded DNA-binding protein
SCNpilot_expt_1000_bf_scaffold_1484_curated_27
Microbacterium sp. C448, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

21848..22471
DNA (624bp) protein (208aa)
hypothetical protein n=1 Tax=Curtobacterium ginsengisoli RepID=UPI0003B481DD
Uncharacterized protein {ECO:0000313|EMBL:CDJ99361.1}; TaxID=1177594 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. C448.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1484_curated_28
Microbacterium sp. C448, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

22446..22667
DNA (222bp) protein (74aa)
Uncharacterized protein n=1 Tax=Propionibacterium freudenreichii subsp. shermanii (strain ATCC 9614 / CIP 103027 / CIRM-BIA1) RepID=D7GDL9_PROFC
Uncharacterized protein {ECO:0000313|EMBL:CDJ99360.1}; TaxID=1177594 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. C448.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1484_curated_29
Microbacterium sp. C448, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

22660..23850
DNA (1191bp) protein (397aa)
integrase n=1 Tax=Kocuria rhizophila RepID=UPI00035E712B
Phage integrase {ECO:0000313|EMBL:CDJ99359.1}; TaxID=1177594 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. C448.;"
int; phage integrase
SCNpilot_expt_1000_bf_scaffold_1484_curated_30
Jonesia denitrificans, Jonesia, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(24328..27354)
DNA (3027bp) protein (1009aa)
SMC domain protein n=1 Tax=Jonesia denitrificans (strain ATCC 14870 / DSM 20603 / CIP 55134) RepID=C7QZ95_JONDD
SMC domain protein {ECO:0000313|EMBL:ACV09393.1}; TaxID=471856 species="Bacteria; Actinobacteria; Micrococcales; Jonesiaceae; Jonesia.;" source="Jonesia denitrificans (strain ATCC 14870 / DSM 20603 / CIP 55134); (Listeria denitrificans).;"
SMC domain-containing protein
Displaying items 1-30 of 105 in total

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