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SCNpilot_cont_300_bf_scaffold_4947_curated

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Displaying 17 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_300_bf_scaffold_4947_curated_1
unknown

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comp(1..69)
DNA (69bp) protein (23aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_4947_curated_2
Microbacterium sp. SUBG005, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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comp(71..544)
DNA (474bp) protein (158aa)
endonuclease; K07447 putative holliday junction resolvase [EC:3.1.-.-]
Putative Holliday junction resolvase {ECO:0000256|HAMAP-Rule:MF_00651, ECO:0000256|SAAS:SAAS00086483}; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00651, ECO:0000256|SAAS:SAAS00086510};; TaxID=1504156 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. SUBG005.;"
hypothetical protein n=1 Tax=Microbacterium sp. 292MF RepID=UPI000360CBDD
SCNpilot_cont_300_bf_scaffold_4947_curated_3
Microbacterium mangrovi, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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comp(541..3201)
DNA (2661bp) protein (887aa)
Alanine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00036, ECO:0000256|SAAS:SAAS00015689}; EC=6.1.1.7 {ECO:0000256|HAMAP-Rule:MF_00036, ECO:0000256|SAAS:SAAS00015673};; Alanyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00036}; TaxID=1348253 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium mangrovi.;"
alaS; alanyl-tRNA synthetase; K01872 alanyl-tRNA synthetase [EC:6.1.1.7]
alanyl-tRNA synthetase n=1 Tax=Microbacterium sp. 292MF RepID=UPI000379F280
SCNpilot_cont_300_bf_scaffold_4947_curated_4
Microbacterium sp. TS-1, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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comp(3278..3562)
DNA (285bp) protein (95aa)
hypothetical protein n=1 Tax=Microbacterium sp. 292MF RepID=UPI0003601405
Fe3+-hydroxamate ABC transporter substrate-bindng protein {ECO:0000313|EMBL:GAD33219.1}; TaxID=1344956 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. TS-1.;"
ATPase
SCNpilot_cont_300_bf_scaffold_4947_curated_5
Microbacterium mangrovi, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


comp(3697..4326)
DNA (630bp) protein (210aa)
30S ribosomal protein S4 n=1 Tax=Microbacterium barkeri RepID=UPI00030819E7
30S ribosomal protein S4 {ECO:0000256|HAMAP-Rule:MF_01306}; TaxID=1348253 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium mangrovi.;"
rpsD; ribosomal protein S4; K02986 small subunit ribosomal protein S4
SCNpilot_cont_300_bf_scaffold_4947_curated_6
Microbacterium sp. MRS-1, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(4526..5857)
DNA (1332bp) protein (444aa)
ATPase AAA n=1 Tax=Microbacterium sp. 292MF RepID=UPI0003658CCF
ATPase AAA {ECO:0000313|EMBL:EXJ50643.1}; TaxID=1451261 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. MRS-1.;"
ATPase; K07478 putative ATPase
SCNpilot_cont_300_bf_scaffold_4947_curated_7
Microbacterium oleivorans, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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5985..6272
DNA (288bp) protein (96aa)
hypothetical protein n=1 Tax=Microbacterium yannicii RepID=UPI0002E018AE
Dioxygenase {ECO:0000313|EMBL:EZP29727.1}; TaxID=273677 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium oleivorans.;"
dioxygenase
SCNpilot_cont_300_bf_scaffold_4947_curated_8
Microbacterium hominis, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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6369..7865
DNA (1497bp) protein (499aa)
hypothetical protein n=1 Tax=Microbacterium yannicii RepID=UPI00030639D3
Uncharacterized protein {ECO:0000313|EMBL:KIC57546.1}; TaxID=162426 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium hominis.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_4947_curated_9
Microbacterium sp. MRS-1, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

7935..8510
DNA (576bp) protein (192aa)
hypothetical protein n=1 Tax=Microbacterium yannicii RepID=UPI0002F59DC5
Uncharacterized protein {ECO:0000313|EMBL:EXJ50641.1}; TaxID=1451261 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. MRS-1.;"
SAM-dependent methyltransferase
SCNpilot_cont_300_bf_scaffold_4947_curated_10
Microbacterium mangrovi, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(8480..10732)
DNA (2253bp) protein (751aa)
relA; guanosine polyphosphate pyrophosphohydrolase/synthetase; K00951 GTP pyrophosphokinase [EC:2.7.6.5]
(p)ppGpp synthetase n=1 Tax=Microbacterium sp. 292MF RepID=UPI00036B261C
GTP pyrophosphokinase {ECO:0000313|EMBL:KHK97375.1}; TaxID=1348253 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium mangrovi.;"
SCNpilot_cont_300_bf_scaffold_4947_curated_11
Microbacterium mangrovi, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(10804..11793)
DNA (990bp) protein (330aa)
Protein-export membrane protein SecF n=1 Tax=Microbacterium sp. oral taxon 186 str. F0373 RepID=S3AMG4_9MICO
Protein-export membrane protein SecF {ECO:0000256|HAMAP-Rule:MF_01464}; TaxID=1348253 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium mangrovi.;"
preprotein translocase subunit SecF; K03074 preprotein translocase subunit SecF
SCNpilot_cont_300_bf_scaffold_4947_curated_12
Microbacterium hominis, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(11793..13529)
DNA (1737bp) protein (579aa)
Protein translocase subunit SecD n=1 Tax=Microbacterium sp. oral taxon 186 str. F0373 RepID=S3A3T4_9MICO
Protein translocase subunit SecD {ECO:0000256|HAMAP-Rule:MF_01463}; TaxID=162426 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium hominis.;"
preprotein translocase subunit SecD; K03072 preprotein translocase subunit SecD
SCNpilot_cont_300_bf_scaffold_4947_curated_13
Microbacterium mangrovi, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(13561..14061)
DNA (501bp) protein (167aa)
hypothetical protein n=1 Tax=Microbacterium yannicii RepID=UPI00031CA844
Uncharacterized protein {ECO:0000313|EMBL:KHK97372.1}; TaxID=1348253 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium mangrovi.;"
preprotein translocase subunit YajC; K03210 preprotein translocase subunit YajC
SCNpilot_cont_300_bf_scaffold_4947_curated_14
Microbacterium sp. SUBG005, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(14142..15179)
DNA (1038bp) protein (346aa)
Holliday junction ATP-dependent DNA helicase RuvB {ECO:0000256|HAMAP-Rule:MF_00016}; EC=3.6.4.12 {ECO:0000256|HAMAP-Rule:MF_00016};; TaxID=1504156 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. SUBG005.;"
ruvB; holliday junction resolvasome, helicase subunit; K03551 holliday junction DNA helicase RuvB [EC:3.6.4.12]
Holliday junction DNA helicase RuvB n=1 Tax=Microbacterium sp. 292MF RepID=UPI00037B4589
SCNpilot_cont_300_bf_scaffold_4947_curated_15
Microbacterium mangrovi, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(15172..15792)
DNA (621bp) protein (207aa)
Holliday junction ATP-dependent DNA helicase RuvA {ECO:0000256|HAMAP-Rule:MF_00031, ECO:0000256|SAAS:SAAS00058935}; EC=3.6.4.12 {ECO:0000256|HAMAP-Rule:MF_00031, ECO:0000256|SAAS:SAAS00058896};; TaxID=1348253 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium mangrovi.;"
holliday junction resolvasome, DNA-binding subunit; K03550 holliday junction DNA helicase RuvA [EC:3.6.4.12]
hypothetical protein n=1 Tax=Microbacterium yannicii RepID=UPI00036FAD9E
SCNpilot_cont_300_bf_scaffold_4947_curated_16
Microbacterium mangrovi, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(15848..16303)
DNA (456bp) protein (152aa)
Crossover junction endodeoxyribonuclease RuvC {ECO:0000256|HAMAP-Rule:MF_00034, ECO:0000256|SAAS:SAAS00106335}; EC=3.1.22.4 {ECO:0000256|HAMAP-Rule:MF_00034, ECO:0000256|SAAS:SAAS00106388};; Holliday junction nuclease RuvC {ECO:0000256|HAMAP-Rule:MF_00034}; Holliday junction resolvase RuvC {ECO:0000256|HAMAP-Rule:MF_00034}; TaxID=1348253 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium mangrovi.;"
holliday junction resolvasome, endonuclease subunit; K01159 crossover junction endodeoxyribonuclease RuvC [EC:3.1.22.4]
crossover junction endodeoxyribonuclease RuvC n=1 Tax=Microbacterium yannicii RepID=UPI000370A28C
SCNpilot_cont_300_bf_scaffold_4947_curated_17
Microbacterium sp. SA39, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(16434..16994)
DNA (561bp) protein (187aa)
transcriptional regulator n=1 Tax=Microbacterium yannicii RepID=UPI0003009907
Probable transcriptional regulatory protein RS85_01469 {ECO:0000256|HAMAP-Rule:MF_00693}; TaxID=1263625 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. SA39.;"
hypothetical protein
Displaying 17 items

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