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SCNpilot_cont_1000_p_scaffold_58_curated

Search features with annotation key words

Displaying items 1-30 of 220 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_1000_p_scaffold_58_curated_1
Mucilaginibacter paludis, Mucilaginibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(160..741)
DNA (582bp) protein (194aa)
Thymidine kinase {ECO:0000256|HAMAP-Rule:MF_00124, ECO:0000256|RuleBase:RU000544}; EC=2.7.1.21 {ECO:0000256|HAMAP-Rule:MF_00124, ECO:0000256|RuleBase:RU000544};; TaxID=714943 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Mucilaginibacter.;" source="Mucilaginibacter paludis DSM 18603.;"
thymidine kinase n=1 Tax=Cytophagales str. B6 RepID=UPI0003B5BCAE
thymidine kinase
SCNpilot_cont_1000_p_scaffold_58_curated_2
Pedobacter kyungheensis, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

823..2079
DNA (1257bp) protein (419aa)
hypothetical protein n=1 Tax=Pedobacter agri RepID=UPI00029A48D7
Uncharacterized protein {ECO:0000313|EMBL:KIA92643.1}; TaxID=1069985 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter kyungheensis.;"
hypothetical protein
SCNpilot_cont_1000_p_scaffold_58_curated_3
Mucilaginibacter paludis, Mucilaginibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(2070..3341)
DNA (1272bp) protein (424aa)
Rod shape-determining protein RodA n=1 Tax=Mucilaginibacter paludis DSM 18603 RepID=H1Y6W9_9SPHI
Rod shape-determining protein RodA {ECO:0000313|EMBL:EHQ28376.1}; Flags: Precursor;; TaxID=714943 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Mucilaginibacter.;" source="Mucilaginibacter paludis DSM 18603.;"
rod shape-determining protein RodA; K05837 rod shape determining protein RodA
SCNpilot_cont_1000_p_scaffold_58_curated_4
Mucilaginibacter paludis, Mucilaginibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(3331..5355)
DNA (2025bp) protein (675aa)
penicillin-binding protein 2 (EC:2.4.1.129); K05515 penicillin-binding protein 2
Penicillin-binding protein 2 n=1 Tax=Mucilaginibacter paludis DSM 18603 RepID=H1Y6W8_9SPHI
Penicillin-binding protein 2 {ECO:0000313|EMBL:EHQ28375.1}; Flags: Precursor;; TaxID=714943 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Mucilaginibacter.;" source="Mucilaginibacter paludis DSM 18603.;"
SCNpilot_cont_1000_p_scaffold_58_curated_5
Mucilaginibacter paludis, Mucilaginibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(5352..5870)
DNA (519bp) protein (173aa)
Rod shape-determining protein MreD n=1 Tax=Mucilaginibacter paludis DSM 18603 RepID=H1Y6W7_9SPHI
Rod shape-determining protein MreD {ECO:0000313|EMBL:EHQ28374.1}; TaxID=714943 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Mucilaginibacter.;" source="Mucilaginibacter paludis DSM 18603.;"
rod shape-determining protein MreD
SCNpilot_cont_1000_p_scaffold_58_curated_6
Mucilaginibacter paludis, Mucilaginibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(5863..6696)
DNA (834bp) protein (278aa)
Cell shape-determining protein MreC n=1 Tax=Mucilaginibacter paludis DSM 18603 RepID=H1Y6W6_9SPHI
Rod shape-determining protein MreC {ECO:0000313|EMBL:EHQ28373.1}; TaxID=714943 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Mucilaginibacter.;" source="Mucilaginibacter paludis DSM 18603.;"
Rod shape-determining protein MreC; K03570 rod shape-determining protein MreC
SCNpilot_cont_1000_p_scaffold_58_curated_7
Mucilaginibacter paludis, Mucilaginibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(6782..7804)
DNA (1023bp) protein (341aa)
Cell shape determining protein, MreB/Mrl family n=1 Tax=Mucilaginibacter paludis DSM 18603 RepID=H1Y6W5_9SPHI
Cell shape determining protein, MreB/Mrl family {ECO:0000313|EMBL:EHQ28372.1}; TaxID=714943 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Mucilaginibacter.;" source="Mucilaginibacter paludis DSM 18603.;"
MreB/Mrl family cell shape determining protein; K03569 rod shape-determining protein MreB and related proteins
SCNpilot_cont_1000_p_scaffold_58_curated_8
Mucilaginibacter paludis, Mucilaginibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(8035..9561)
DNA (1527bp) protein (509aa)
phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase (EC:2.1.2.3); K00602 phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10]
Phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase n=1 Tax=Mucilaginibacter paludis DSM 18603 RepID=H1Y6W4_9SPHI
Bifunctional purine biosynthesis protein PurH {ECO:0000256|HAMAP-Rule:MF_00139, ECO:0000256|SAAS:SAAS00010516}; TaxID=714943 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Mucilaginibacter.;" source="Mucilaginibacter paludis DSM 18603.;"
SCNpilot_cont_1000_p_scaffold_58_curated_9
unknown

Not on your lists

9732..9974
DNA (243bp) protein (81aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_58_curated_10
Haliscomenobacter hydrossis, Haliscomenobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

10278..10808
DNA (531bp) protein (177aa)
Uncharacterized protein n=1 Tax=Haliscomenobacter hydrossis (strain ATCC 27775 / DSM 1100 / LMG 10767 / O) RepID=F4KSE1_HALH1
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEE53344.1}; TaxID=760192 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Saprospiraceae; Haliscomenobacter.;" source="Haliscomenobacter hydrossis (strain ATCC 27775 / DSM 1100 / LMG 10767; / O).;"
SCNpilot_cont_1000_p_scaffold_58_curated_11
Mucilaginibacter paludis, Mucilaginibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(10831..11409)
DNA (579bp) protein (193aa)
Phosphoribosylglycinamide formyltransferase {ECO:0000256|HAMAP-Rule:MF_01930}; EC=2.1.2.2 {ECO:0000256|HAMAP-Rule:MF_01930};; 5'-phosphoribosylglycinamide transformylase {ECO:0000256|HAMAP-Rule:MF_01930}; GAR transformylase {ECO:0000256|HAMAP-Rule:MF_01930}; Flags: Precursor;; TaxID=714943 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Mucilaginibacter.;" source="Mucilaginibacter paludis DSM 18603.;"
formyltetrahydrofolate-dependent phosphoribosylglycinamide formyltransferase (EC:2.1.2.2); K11175 phosphoribosylglycinamide formyltransferase 1 [EC:2.1.2.2]
phosphoribosylglycinamide formyltransferase n=1 Tax=Cytophagales str. B6 RepID=UPI0003B638C3
SCNpilot_cont_1000_p_scaffold_58_curated_12
Mucilaginibacter paludis, Mucilaginibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(11455..12009)
DNA (555bp) protein (185aa)
Putative uncharacterized protein n=1 Tax=Mucilaginibacter paludis DSM 18603 RepID=H1Y0D0_9SPHI
Putative uncharacterized protein {ECO:0000313|EMBL:EHQ28179.1}; Flags: Precursor;; TaxID=714943 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Mucilaginibacter.;" source="Mucilaginibacter paludis DSM 18603.;"
SCNpilot_cont_1000_p_scaffold_58_curated_13
Mucilaginibacter paludis, Mucilaginibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

12076..13056
DNA (981bp) protein (327aa)
2,3-diketo-L-gulonate reductase; K08092 3-dehydro-L-gulonate 2-dehydrogenase [EC:1.1.1.130]
Malate/L-lactate dehydrogenase n=1 Tax=Mucilaginibacter paludis DSM 18603 RepID=H1Y042_9SPHI
Malate/L-lactate dehydrogenase {ECO:0000313|EMBL:EHQ27951.1}; TaxID=714943 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Mucilaginibacter.;" source="Mucilaginibacter paludis DSM 18603.;"
SCNpilot_cont_1000_p_scaffold_58_curated_14
Pedobacter kyungheensis, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(13066..13362)
DNA (297bp) protein (99aa)
septum formation initiator n=1 Tax=Pedobacter agri RepID=UPI00029A43D9
septum formation initiator
Septum formation initiator {ECO:0000313|EMBL:KIA92915.1}; TaxID=1069985 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter kyungheensis.;"
SCNpilot_cont_1000_p_scaffold_58_curated_15
Mucilaginibacter paludis, Mucilaginibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(13510..14880)
DNA (1371bp) protein (457aa)
DEAD/DEAH box helicase; K11927 ATP-dependent RNA helicase RhlE [EC:3.6.4.13]
DEAD/DEAH box helicase n=1 Tax=Cytophagales str. B6 RepID=UPI0003B74DD0
DEAD/DEAH box helicase domain protein {ECO:0000313|EMBL:EHQ28362.1}; TaxID=714943 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Mucilaginibacter.;" source="Mucilaginibacter paludis DSM 18603.;"
SCNpilot_cont_1000_p_scaffold_58_curated_16
Dyadobacter fermentans, Dyadobacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(14990..15508)
DNA (519bp) protein (173aa)
lipoprotein signal peptidase; K03101 signal peptidase II [EC:3.4.23.36]
Lipoprotein signal peptidase {ECO:0000256|HAMAP-Rule:MF_00161, ECO:0000256|SAAS:SAAS00112541}; EC=3.4.23.36 {ECO:0000256|HAMAP-Rule:MF_00161, ECO:0000256|SAAS:SAAS00112508};; Prolipoprotein signal peptidase {ECO:0000256|HAMAP-Rule:MF_00161}; Signal peptidase II {ECO:0000256|HAMAP-Rule:MF_00161}; TaxID=471854 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Dyadobacter.;" source="Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114).;"
Lipoprotein signal peptidase n=1 Tax=Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114) RepID=C6W596_DYAFD
SCNpilot_cont_1000_p_scaffold_58_curated_17
Mucilaginibacter paludis, Mucilaginibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(15613..16716)
DNA (1104bp) protein (368aa)
Carbamoyl-phosphate synthase small chain {ECO:0000256|HAMAP-Rule:MF_01209}; EC=6.3.5.5 {ECO:0000256|HAMAP-Rule:MF_01209};; Carbamoyl-phosphate synthetase glutamine chain {ECO:0000256|HAMAP-Rule:MF_01209}; TaxID=714943 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Mucilaginibacter.;" source="Mucilaginibacter paludis DSM 18603.;"
carbamoyl phosphate synthase small subunit (EC:6.3.5.5); K01956 carbamoyl-phosphate synthase small subunit [EC:6.3.5.5]
carbamoyl phosphate synthase small subunit n=1 Tax=Cytophagales str. B6 RepID=UPI0003B400A8
SCNpilot_cont_1000_p_scaffold_58_curated_18
Mucilaginibacter paludis, Mucilaginibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

16972..17787
DNA (816bp) protein (272aa)
3-methyl-2-oxobutanoate hydroxymethyltransferase {ECO:0000256|HAMAP-Rule:MF_00156, ECO:0000256|SAAS:SAAS00094725}; EC=2.1.2.11 {ECO:0000256|HAMAP-Rule:MF_00156, ECO:0000256|SAAS:SAAS00094725};; Ketopantoate hydroxymethyltransferase {ECO:0000256|HAMAP-Rule:MF_00156}; TaxID=714943 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Mucilaginibacter.;" source="Mucilaginibacter paludis DSM 18603.;"
panB; 3-methyl-2-oxobutanoate hydroxymethyltransferase; K00606 3-methyl-2-oxobutanoate hydroxymethyltransferase [EC:2.1.2.11]
3-methyl-2-oxobutanoate hydroxymethyltransferase n=1 Tax=Cytophagales str. B6 RepID=UPI0003B446A4
SCNpilot_cont_1000_p_scaffold_58_curated_19
Mucilaginibacter paludis, Mucilaginibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

17890..18609
DNA (720bp) protein (240aa)
pseudouridine synthase; K06180 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
ribosomal large subunit pseudouridine synthase D n=1 Tax=Cytophagales str. B6 RepID=UPI0003B69C4C
Pseudouridine synthase {ECO:0000313|EMBL:EHQ26657.1}; TaxID=714943 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Mucilaginibacter.;" source="Mucilaginibacter paludis DSM 18603.;"
SCNpilot_cont_1000_p_scaffold_58_curated_20
Chryseobacterium oranimense, Chryseobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(18644..19567)
DNA (924bp) protein (308aa)
Putative hydrolase or acyltransferase of alpha/beta superfamily n=1 Tax=Chryseobacterium sp. CF314 RepID=J3CKX2_9FLAO
Proline iminopeptidase {ECO:0000313|EMBL:CEJ71326.1}; Flags: Precursor;; TaxID=1300143 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Chryseobacterium.;" source="Chryseobacterium oranimense G311.;"
alpha/beta hydrolase
SCNpilot_cont_1000_p_scaffold_58_curated_21
unknown

Not on your lists

comp(19614..19802)
DNA (189bp) protein (63aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_58_curated_22
unknown

Not on your lists

20017..20184
DNA (168bp) protein (56aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_58_curated_23
Pedobacter heparinus, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

20334..20771
DNA (438bp) protein (146aa)
cyclophilin type peptidyl-prolyl cis-trans isomerase; K03768 peptidyl-prolyl cis-trans isomerase B (cyclophilin B) [EC:5.2.1.8]
Peptidyl-prolyl cis-trans isomerase {ECO:0000256|RuleBase:RU000493}; EC=5.2.1.8 {ECO:0000256|RuleBase:RU000493};; TaxID=485917 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter heparinus (strain ATCC 13125 / DSM 2366 / NCIB 9290).;"
Peptidyl-prolyl cis-trans isomerase n=1 Tax=Pedobacter heparinus (strain ATCC 13125 / DSM 2366 / NCIB 9290) RepID=C6Y198_PEDHD
SCNpilot_cont_1000_p_scaffold_58_curated_24
Mucilaginibacter paludis, Mucilaginibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

20867..21376
DNA (510bp) protein (170aa)
hypothetical protein n=1 Tax=Cytophagales str. B6 RepID=UPI0003B352A0
Putative uncharacterized protein {ECO:0000313|EMBL:EHQ28561.1}; TaxID=714943 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Mucilaginibacter.;" source="Mucilaginibacter paludis DSM 18603.;"
hypothetical protein
SCNpilot_cont_1000_p_scaffold_58_curated_25
Dyadobacter fermentans, Dyadobacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(21451..21870)
DNA (420bp) protein (140aa)
Stress responsive alpha-beta barrel n=1 Tax=Dyadobacter beijingensis RepID=UPI000363A923
stress responsive alpha-beta barrel domain-containing protein
Stress responsive alpha-beta barrel domain protein {ECO:0000313|EMBL:ACT92821.1}; Flags: Precursor;; TaxID=471854 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Dyadobacter.;" source="Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114).;"
SCNpilot_cont_1000_p_scaffold_58_curated_26
Mucilaginibacter paludis, Mucilaginibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(21883..22800)
DNA (918bp) protein (306aa)
cation transporter n=1 Tax=Cytophagales str. B6 RepID=UPI0003B5D4F5
Cation diffusion facilitator family transporter {ECO:0000313|EMBL:EHQ28562.1}; TaxID=714943 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Mucilaginibacter.;" source="Mucilaginibacter paludis DSM 18603.;"
metal transport-related membrane protein; K03295 cation efflux system protein, CDF family
SCNpilot_cont_1000_p_scaffold_58_curated_27
Mucilaginibacter paludis, Mucilaginibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(22947..23420)
DNA (474bp) protein (158aa)
Ribosomal RNA large subunit methyltransferase H {ECO:0000256|HAMAP-Rule:MF_00658}; EC=2.1.1.177 {ECO:0000256|HAMAP-Rule:MF_00658};; 23S rRNA (pseudouridine1915-N3)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00658}; 23S rRNA m3Psi1915 methyltransferase {ECO:0000256|HAMAP-Rule:MF_00658}; rRNA (pseudouridine-N3-)-methyltransferase RlmH {ECO:0000256|HAMAP-Rule:MF_00658}; TaxID=714943 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Mucilaginibacter.;" source="Mucila
hypothetical protein; K00783 23S rRNA (pseudouridine1915-N3)-methyltransferase [EC:2.1.1.177]
50S rRNA methyltransferase n=1 Tax=Cytophagales str. B6 RepID=UPI0003B6E2C5
SCNpilot_cont_1000_p_scaffold_58_curated_28
Mucilaginibacter paludis, Mucilaginibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

23498..25306
DNA (1809bp) protein (603aa)
DNA mismatch repair protein MutS n=1 Tax=Cytophagales str. B6 RepID=UPI0003B469F2
DNA mismatch repair protein MutS domain protein {ECO:0000313|EMBL:EHQ28564.1}; TaxID=714943 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Mucilaginibacter.;" source="Mucilaginibacter paludis DSM 18603.;"
mismatch repair ATPase
SCNpilot_cont_1000_p_scaffold_58_curated_29
unknown

Not on your lists

25560..25658
DNA (99bp) protein (33aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_58_curated_30
Mucilaginibacter paludis, Mucilaginibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

25706..25918
DNA (213bp) protein (71aa)
hypothetical protein n=1 Tax=Cytophagales str. B6 RepID=UPI0003B45042
Putative uncharacterized protein {ECO:0000313|EMBL:EHQ28350.1}; TaxID=714943 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Mucilaginibacter.;" source="Mucilaginibacter paludis DSM 18603.;"
hypothetical protein
Displaying items 1-30 of 220 in total

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