ggKbase home page

SCNpilot_cont_300_bf_scaffold_3091_curated

Search features with annotation key words

Displaying 24 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_300_bf_scaffold_3091_curated_1
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1..1239)
DNA (1239bp) protein (413aa)
Peptidase M23B n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QQT3_NITHX
peptidase M23B
Peptidase M23B {ECO:0000313|EMBL:ABE61414.1}; Flags: Precursor;; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCNpilot_cont_300_bf_scaffold_3091_curated_2
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1430..1912)
DNA (483bp) protein (161aa)
rRNA large subunit methyltransferase; K00783 23S rRNA (pseudouridine1915-N3)-methyltransferase [EC:2.1.1.177]
Ribosomal RNA large subunit methyltransferase H {ECO:0000255|HAMAP-Rule:MF_00658}; EC=2.1.1.177 {ECO:0000255|HAMAP-Rule:MF_00658};; 23S rRNA (pseudouridine1915-N3)-methyltransferase {ECO:0000255|HAMAP-Rule:MF_00658}; 23S rRNA m3Psi1915 methyltransferase {ECO:0000255|HAMAP-Rule:MF_00658}; rRNA (pseudouridine-N3-)-methyltransferase RlmH {ECO:0000255|HAMAP-Rule:MF_00658}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamb
Ribosomal RNA large subunit methyltransferase H n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=RLMH_NITHX
SCNpilot_cont_300_bf_scaffold_3091_curated_3
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2072..2674)
DNA (603bp) protein (201aa)
Ribosomal silencing factor RsfS n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QQT5_NITHX
Iojap-related protein; K09710 ribosome-associated protein
Ribosomal silencing factor RsfS {ECO:0000256|HAMAP-Rule:MF_01477}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCNpilot_cont_300_bf_scaffold_3091_curated_4
Nitrobacter sp. Nb-311A, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2616..3284)
DNA (669bp) protein (223aa)
Probable nicotinate-nucleotide adenylyltransferase {ECO:0000256|HAMAP-Rule:MF_00244}; EC=2.7.7.18 {ECO:0000256|HAMAP-Rule:MF_00244};; Deamido-NAD(+) diphosphorylase {ECO:0000256|HAMAP-Rule:MF_00244}; Deamido-NAD(+) pyrophosphorylase {ECO:0000256|HAMAP-Rule:MF_00244}; Nicotinate mononucleotide adenylyltransferase {ECO:0000256|HAMAP-Rule:MF_00244}; TaxID=314253 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter sp. Nb-311A.;"
nadD; nicotinic acid mononucleotide adenylyltransferase (EC:2.7.7.18); K00969 nicotinate-nucleotide adenylyltransferase [EC:2.7.7.18]
Probable nicotinate-nucleotide adenylyltransferase n=1 Tax=Nitrobacter sp. Nb-311A RepID=A3WR92_9BRAD
SCNpilot_cont_300_bf_scaffold_3091_curated_5
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3371..4663)
DNA (1293bp) protein (431aa)
proA; gamma-glutamyl phosphate reductase (EC:1.2.1.41); K00147 glutamate-5-semialdehyde dehydrogenase [EC:1.2.1.41]
Gamma-glutamyl phosphate reductase {ECO:0000255|HAMAP-Rule:MF_00412}; Short=GPR {ECO:0000255|HAMAP-Rule:MF_00412};; EC=1.2.1.41 {ECO:0000255|HAMAP-Rule:MF_00412};; Glutamate-5-semialdehyde dehydrogenase {ECO:0000255|HAMAP-Rule:MF_00412}; Glutamyl-gamma-semialdehyde dehydrogenase {ECO:0000255|HAMAP-Rule:MF_00412}; Short=GSA dehydrogenase {ECO:0000255|HAMAP-Rule:MF_00412};; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter h
Gamma-glutamyl phosphate reductase n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=PROA_NITHX rbh
SCNpilot_cont_300_bf_scaffold_3091_curated_6
Afipia sp. 1NLS2, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4778..5500)
DNA (723bp) protein (241aa)
Transcriptional regulator, HxlR family n=1 Tax=Afipia sp. 1NLS2 RepID=D6V4T3_9BRAD
Transcriptional regulator, HxlR family {ECO:0000313|EMBL:EFI52963.1}; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. 1NLS2.;"
HxlR family transcriptional regulator
SCNpilot_cont_300_bf_scaffold_3091_curated_7
Hyphomonas sp. BRH_c22, Hyphomonas, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5608..6738
DNA (1131bp) protein (377aa)
acyl-CoA dehydrogenase n=1 Tax=Saccharopolyspora erythraea RepID=UPI0001D30DAD
Uncharacterized protein {ECO:0000313|EMBL:KJS36646.1}; TaxID=1629710 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Hyphomonadaceae; Hyphomonas.;" source="Hyphomonas sp. BRH_c22.;"
acyl-CoA dehydrogenase
SCNpilot_cont_300_bf_scaffold_3091_curated_8
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7058..7492
DNA (435bp) protein (145aa)
Uncharacterized protein n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QQT8_NITHX
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABE61409.1}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCNpilot_cont_300_bf_scaffold_3091_curated_9
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7567..8721)
DNA (1155bp) protein (385aa)
gamma-glutamyl kinase (EC:2.7.2.11); K00931 glutamate 5-kinase [EC:2.7.2.11]
Glutamate 5-kinase {ECO:0000255|HAMAP-Rule:MF_00456}; EC=2.7.2.11 {ECO:0000255|HAMAP-Rule:MF_00456};; Gamma-glutamyl kinase {ECO:0000255|HAMAP-Rule:MF_00456}; Short=GK {ECO:0000255|HAMAP-Rule:MF_00456};; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
Glutamate 5-kinase n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=PROB_NITHX rbh
SCNpilot_cont_300_bf_scaffold_3091_curated_10
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8974..10050)
DNA (1077bp) protein (359aa)
GTPase Obg n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=OBG_NITHX rbh
obgE; GTPase ObgE; K03979 GTP-binding protein
GTPase Obg {ECO:0000255|HAMAP-Rule:MF_01454}; GTP-binding protein Obg {ECO:0000255|HAMAP-Rule:MF_01454}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCNpilot_cont_300_bf_scaffold_3091_curated_11
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10180..10782)
DNA (603bp) protein (201aa)
GCN5-related N-acetyltransferase n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QQU1_NITHX
N-acetyltransferase GCN5
GCN5-related N-acetyltransferase {ECO:0000313|EMBL:ABE61406.1}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCNpilot_cont_300_bf_scaffold_3091_curated_12
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(10923..11195)
DNA (273bp) protein (91aa)
50S ribosomal protein L27 n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=RL27_NITHX
rpmA; 50S ribosomal protein L27; K02899 large subunit ribosomal protein L27
50S ribosomal protein L27 {ECO:0000255|HAMAP-Rule:MF_00539}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCNpilot_cont_300_bf_scaffold_3091_curated_13
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(11281..11802)
DNA (522bp) protein (174aa)
50S ribosomal protein L21 n=1 Tax=Afipia felis ATCC 53690 RepID=K8NR19_AFIFE
50S ribosomal protein L21 {ECO:0000256|HAMAP-Rule:MF_01363, ECO:0000256|RuleBase:RU000562}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53690.;"
rplU; 50S ribosomal protein L21; K02888 large subunit ribosomal protein L21
SCNpilot_cont_300_bf_scaffold_3091_curated_14
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12167..13288
DNA (1122bp) protein (374aa)
Uncharacterized protein n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QQU4_NITHX
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABE61403.1}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCNpilot_cont_300_bf_scaffold_3091_curated_15
Sphingopyxis sp. LC363, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14143..14541
DNA (399bp) protein (133aa)
hypothetical protein n=1 Tax=Sphingomonas sp. PR090111-T3T-6A RepID=UPI0003670636
Uncharacterized protein {ECO:0000313|EMBL:KGB58412.1}; TaxID=1120705 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. LC363.;"
SCNpilot_cont_300_bf_scaffold_3091_curated_16
unknown

Not on your lists

14886..14990
DNA (105bp) protein (35aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_3091_curated_17
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15614..16228
DNA (615bp) protein (205aa)
Uncharacterized protein n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QQU6_NITHX
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABE61401.1}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCNpilot_cont_300_bf_scaffold_3091_curated_18
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16318..16596
DNA (279bp) protein (93aa)
Serine O-acetyltransferase n=1 Tax=Bradyrhizobium sp. DFCI-1 RepID=U1IER2_9BRAD
Membrane protein {ECO:0000313|EMBL:KIZ47686.1}; TaxID=1076 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris.;"
transglycosylase-associated protein
SCNpilot_cont_300_bf_scaffold_3091_curated_19
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16738..17463
DNA (726bp) protein (242aa)
Nuclease (SNase-like) n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QQU8_NITHX
nuclease (SNase-like)
Nuclease (SNase-like) {ECO:0000313|EMBL:ABE61399.1}; Flags: Precursor;; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCNpilot_cont_300_bf_scaffold_3091_curated_20
Nitrobacter sp. Nb-311A, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17769..19010
DNA (1242bp) protein (414aa)
Peptidase M48 n=1 Tax=Nitrobacter sp. Nb-311A RepID=A3WR47_9BRAD
Peptidase M48 {ECO:0000313|EMBL:EAQ37544.1}; TaxID=314253 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter sp. Nb-311A.;"
peptidase M48, Ste24p
SCNpilot_cont_300_bf_scaffold_3091_curated_21
unknown

Not on your lists

comp(19185..19517)
DNA (333bp) protein (111aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_3091_curated_22
Nitrobacter winogradskyi, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19456..20277)
DNA (822bp) protein (274aa)
Transcriptional regulator, CarD family n=1 Tax=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) RepID=Q3SVL2_NITWN
transcription factor CarD; K07736 CarD family transcriptional regulator
Transcriptional regulator, CarD family {ECO:0000313|EMBL:ABA03679.1}; TaxID=323098 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391).;"
SCNpilot_cont_300_bf_scaffold_3091_curated_23
Nitrobacter sp. Nb-311A, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20675..21013)
DNA (339bp) protein (113aa)
4Fe-4S ferredoxin, iron-sulfur binding n=1 Tax=Nitrobacter sp. Nb-311A RepID=A3WR41_9BRAD
4Fe-4S ferredoxin, iron-sulfur binding {ECO:0000313|EMBL:EAQ37547.1}; TaxID=314253 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter sp. Nb-311A.;"
4Fe-4S ferredoxin; K05524 ferredoxin
SCNpilot_cont_300_bf_scaffold_3091_curated_24
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21480..23444)
DNA (1965bp) protein (655aa)
Helicase-like protein n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QQV3_NITHX
helicase-like protein
Helicase-like protein {ECO:0000313|EMBL:ABE61394.1}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
Displaying 24 items

View Taxonomy