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SCNpilot_cont_300_bf_scaffold_499_curated

Search features with annotation key words

Displaying items 1-30 of 61 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_300_bf_scaffold_499_curated_1
unknown

Not on your lists

3..359
DNA (357bp) protein (119aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_499_curated_2
RBG_16_Spirochaetes_49_21_curated, Spirochaetes, Bacteria

Not on your lists

comp(703..2838)
DNA (2136bp) protein (712aa)
Enolase n=1 Tax=Novosphingobium pentaromativorans US6-1 RepID=G6EFB7_9SPHN
Tax=RBG_16_Spirochaetes_49_21_curated
SCNpilot_cont_300_bf_scaffold_499_curated_3
unknown

Not on your lists

comp(3100..3675)
DNA (576bp) protein (192aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_499_curated_4
Acidiphilium sp. JA12-A1, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3782..4126)
DNA (345bp) protein (115aa)
hypothetical protein n=1 Tax=Thiomonas sp. FB-6 RepID=UPI0003656D66
Uncharacterized protein {ECO:0000313|EMBL:KDM67693.1}; TaxID=1464546 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium sp. JA12-A1.;"
hypothetical protein; K09137 hypothetical protein
SCNpilot_cont_300_bf_scaffold_499_curated_5
Acidiphilium sp. JA12-A1, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4137..4511)
DNA (375bp) protein (125aa)
Putative fluoride ion transporter CrcB n=3 Tax=Acidiphilium RepID=A5FV99_ACICJ
CrcB protein
Putative fluoride ion transporter CrcB {ECO:0000256|HAMAP-Rule:MF_00454}; TaxID=1464546 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium sp. JA12-A1.;"
SCNpilot_cont_300_bf_scaffold_499_curated_6
Acidiphilium multivorum, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4596..6572)
DNA (1977bp) protein (659aa)
Putative NADH dehydrogenase n=1 Tax=Acidiphilium multivorum (strain DSM 11245 / JCM 8867 / AIU301) RepID=F0J4H7_ACIMA
putative NADH dehydrogenase
Putative NADH dehydrogenase {ECO:0000313|EMBL:BAJ80029.1}; TaxID=926570 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium multivorum (strain DSM 11245 / JCM 8867 / NBRC 100883 /; AIU301).;"
SCNpilot_cont_300_bf_scaffold_499_curated_7
Burkholderia sp. TJI49, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6565..7353)
DNA (789bp) protein (263aa)
NADH ubiquinone oxidoreductase, 20 kDa subunit n=1 Tax=Burkholderia sp. TJI49 RepID=F0FWR1_9BURK
NADH ubiquinone oxidoreductase, 20 kDa subunit {ECO:0000313|EMBL:EGD06341.1}; TaxID=987057 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia sp. TJI49.;"
NADH ubiquinone oxidoreductase, 20 kDa subunit
SCNpilot_cont_300_bf_scaffold_499_curated_8

Not on your lists

comp(7364..8830)
DNA (1467bp) protein (489aa)
NADH dehydrogenase (Ubiquinone), 30 kDa subunit n=2 Tax=mine drainage metagenome RepID=T1AWF6_9ZZZZ
NADH dehydrogenase (Ubiquinone), 30 kDa subunit {ECO:0000313|EMBL:EQD60683.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
putative NADH-ubiquinone oxidoreductase
SCNpilot_cont_300_bf_scaffold_499_curated_9
Acidiphilium cryptum, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8827..10311)
DNA (1485bp) protein (495aa)
NADH dehydrogenase (quinone) (EC:1.6.99.5); K05903 NADH dehydrogenase (quinone) [EC:1.6.99.5]
NADH dehydrogenase (Quinone) {ECO:0000313|EMBL:ABQ29827.1}; EC=1.6.99.5 {ECO:0000313|EMBL:ABQ29827.1};; Flags: Precursor;; TaxID=349163 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium cryptum (strain JF-5).;"
NADH dehydrogenase (Quinone) n=1 Tax=Acidiphilium cryptum (strain JF-5) RepID=A5FW45_ACICJ
SCNpilot_cont_300_bf_scaffold_499_curated_10
Burkholderia sp. TJI49, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10314..10994)
DNA (681bp) protein (227aa)
hypothetical protein; K12140 hydrogenase-4 component E [EC:1.-.-.-]
Hydrogenase 4 membrane component (E) n=1 Tax=Burkholderia sp. TJI49 RepID=F0FWR4_9BURK
Hydrogenase 4 membrane component (E) {ECO:0000313|EMBL:EGD06344.1}; TaxID=987057 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia sp. TJI49.;"
SCNpilot_cont_300_bf_scaffold_499_curated_11
Burkholderia sp. TJI49, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10999..11946)
DNA (948bp) protein (316aa)
Formate hydrogenlyase subunit 4-like protein n=1 Tax=Burkholderia sp. TJI49 RepID=F0FWR5_9BURK
Formate hydrogenlyase subunit 4-like protein {ECO:0000313|EMBL:EGD06345.1}; TaxID=987057 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia sp. TJI49.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_499_curated_12
Candidatus Pelagibacter ubique, Candidatus Pelagibacter, Pelagibacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12165..12494)
DNA (330bp) protein (110aa)
HIT family hydrolase n=1 Tax=Pelagibacter ubique RepID=UPI00035FD23C
apaG; diadenosine tetraphosphate hydrolase
Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases {ECO:0000313|EMBL:AAZ21651.1}; TaxID=335992 species="Bacteria; Proteobacteria; Alphaproteobacteria; Pelagibacterales; Pelagibacteraceae; Candidatus Pelagibacter.;" source="Pelagibacter ubique (strain HTCC1062).;"
SCNpilot_cont_300_bf_scaffold_499_curated_13
Mycobacterium sp. TKK-01-0059, Mycobacterium, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

12661..12945
DNA (285bp) protein (95aa)
Uncharacterized protein n=1 Tax=Mycobacterium yongonense 05-1390 RepID=S4ZI22_9MYCO
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:KEF98759.1}; TaxID=1324269 species="Bacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium; Mycobacterium tuberculosis complex.;" source="Mycobacterium sp. TKK-01-0059.;"
SCNpilot_cont_300_bf_scaffold_499_curated_14
Acidomonas methanolica, Acidomonas, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12942..13493
DNA (552bp) protein (184aa)
Uncharacterized protein n=1 Tax=Gluconobacter oxydans H24 RepID=K7T9M9_GLUOY
Integral membrane protein {ECO:0000313|EMBL:GAJ27873.1}; TaxID=1231351 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidomonas.;" source="Acidomonas methanolica NBRC 104435.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_499_curated_15
Methylobacterium extorquens, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14008..14871
DNA (864bp) protein (288aa)
Uncharacterized protein n=1 Tax=Methylobacterium extorquens (strain DSM 5838 / DM4) RepID=C7CAU3_METED
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CAX24226.1}; TaxID=661410 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium extorquens (strain DSM 5838 / DM4) (Methylobacterium; dichloromethanicum (strain DM4)).;"
SCNpilot_cont_300_bf_scaffold_499_curated_16
unknown

Not on your lists

15089..15322
DNA (234bp) protein (78aa)
Transposase B n=3 Tax=Oligotropha carboxidovorans RepID=F8BQR2_OLICM
SCNpilot_cont_300_bf_scaffold_499_curated_17
unknown

Not on your lists

comp(15680..15778)
DNA (99bp) protein (33aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_499_curated_18
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16072..16254
DNA (183bp) protein (61aa)
Uncharacterized protein n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QNV8_NITHX
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABE62089.1}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCNpilot_cont_300_bf_scaffold_499_curated_19
unknown

Not on your lists

comp(16264..16539)
DNA (276bp) protein (92aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_499_curated_20
Mesorhizobium sp. LNHC221B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16569..17288
DNA (720bp) protein (240aa)
UPI0003CF5922 related cluster n=1 Tax=unknown RepID=UPI0003CF5922
4-phosphopantetheinyl transferase {ECO:0000313|EMBL:ESY82443.1}; TaxID=1287233 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC221B00.;"
4'-phosphopantetheinyl transferase
SCNpilot_cont_300_bf_scaffold_499_curated_21
Mesorhizobium sp. LNHC232B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17399..18412
DNA (1014bp) protein (338aa)
amino acid adenylation domain-containing protein (EC:5.1.1.12)
UPI0003CE9B20 related cluster n=1 Tax=unknown RepID=UPI0003CE9B20
Uncharacterized protein {ECO:0000313|EMBL:ESY64314.1}; TaxID=1287243 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC232B00.;"
SCNpilot_cont_300_bf_scaffold_499_curated_22
Mesorhizobium sp. LNHC221B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18452..20473
DNA (2022bp) protein (674aa)
hypothetical protein n=1 Tax=Bradyrhizobium elkanii RepID=UPI0003664CB8
Uncharacterized protein {ECO:0000313|EMBL:ESY82526.1}; TaxID=1287233 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC221B00.;"
ituC; iturin A synthetase C
SCNpilot_cont_300_bf_scaffold_499_curated_23
Bradyrhizobium sp. DFCI-1, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20555..21727
DNA (1173bp) protein (391aa)
Acyl-CoA dehydrogenase n=1 Tax=Bradyrhizobium sp. DFCI-1 RepID=U1IPU6_9BRAD
Acyl-CoA dehydrogenase {ECO:0000313|EMBL:ERF84769.1}; TaxID=1230476 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. DFCI-1.;"
Acyl-CoA dehydrogenase
SCNpilot_cont_300_bf_scaffold_499_curated_24
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21992..22429
DNA (438bp) protein (146aa)
Uncharacterized protein n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QMY6_NITHX
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABE62411.1}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCNpilot_cont_300_bf_scaffold_499_curated_25
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23268..23486
DNA (219bp) protein (73aa)
Uncharacterized protein n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QPD0_NITHX
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABE61917.1}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCNpilot_cont_300_bf_scaffold_499_curated_26
Bradyrhizobium japonicum, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23709..24440
DNA (732bp) protein (244aa)
hypothetical protein; K06152 gluconate 2-dehydrogenase gamma chain [EC:1.1.99.3]
Uncharacterized protein n=1 Tax=Bradyrhizobium sp. STM 3843 RepID=H0TW49_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:AHY49952.1}; TaxID=476282 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium japonicum SEMIA 5079.;"
SCNpilot_cont_300_bf_scaffold_499_curated_27
Bradyrhizobium japonicum, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24444..26222
DNA (1779bp) protein (593aa)
hypothetical protein; K06151 gluconate 2-dehydrogenase alpha chain [EC:1.1.99.3]
Uncharacterized protein n=1 Tax=Bradyrhizobium japonicum USDA 6 RepID=G7D6H6_BRAJP
Uncharacterized protein {ECO:0000313|EMBL:BAL09862.1}; TaxID=1037409 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium japonicum USDA 6.;"
SCNpilot_cont_300_bf_scaffold_499_curated_28
Bradyrhizobium japonicum, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26215..27447
DNA (1233bp) protein (411aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium japonicum USDA 6 RepID=G7D6H7_BRAJP
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAL09863.1}; TaxID=1037409 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium japonicum USDA 6.;"
SCNpilot_cont_300_bf_scaffold_499_curated_29
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

comp(27460..27732)
DNA (273bp) protein (91aa)
Caa(3)-type oxidase, subunit IV n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4DA36_9BACT
Caa(3)-type oxidase, subunit IV {ECO:0000313|EMBL:EDY16663.1}; Flags: Precursor;; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
caa(3)-type oxidase, subunit IV
SCNpilot_cont_300_bf_scaffold_499_curated_30
Sphingomonas changbaiensis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27732..28373)
DNA (642bp) protein (214aa)
cytochrome C oxidase subunit III; K02276 cytochrome c oxidase subunit III [EC:1.9.3.1]
Cytochrome c oxidase subunit III n=1 Tax=Nitrosococcus halophilus (strain Nc4) RepID=D5BWN1_NITHN
Putative cytochrome c oxidase subunit III {ECO:0000313|EMBL:GAO38476.1}; TaxID=1219043 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas changbaiensis NBRC 104936.;"
Displaying items 1-30 of 61 in total

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