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SCNpilot_expt_300_bf_scaffold_190_curated

Search features with annotation key words

Displaying items 1-30 of 121 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_300_bf_scaffold_190_curated_1
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3..95
DNA (93bp) protein (31aa)
Ammonia monooxygenase 3 subunit C n=1 Tax=Nitrosospira sp. NpAV RepID=P95403_9PROT
ammonia monooxygenase/methane monooxygenase subunit C; K10946 ammonia monooxygenase subunit C
Ammonia monooxygenase subunit C-4 {ECO:0000313|EMBL:AAC69319.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
SCNpilot_expt_300_bf_scaffold_190_curated_2
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(280..2598)
DNA (2319bp) protein (773aa)
Cell division protein FtsK n=1 Tax=Nitrosospira sp. APG3 RepID=M5DH72_9PROT
Cell division protein FtsK {ECO:0000313|EMBL:CCU61653.1}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
cell division FtsK/SpoIIIE; K03466 DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family
SCNpilot_expt_300_bf_scaffold_190_curated_3
Nitrosospira multiformis, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2976..4364)
DNA (1389bp) protein (463aa)
Uncharacterized protein n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2YCN8_NITMU
glcF; glycolate oxidase iron-sulfur subunit; K11473 glycolate oxidase iron-sulfur subunit
Glycolate oxidase iron-sulfur subunit {ECO:0000256|PIRNR:PIRNR000139}; TaxID=323848 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849).;"
SCNpilot_expt_300_bf_scaffold_190_curated_4
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4374..5456)
DNA (1083bp) protein (361aa)
Glycolate dehydrogenase, FAD-binding subunit GlcE {ECO:0000313|EMBL:CCU61651.1}; EC=1.1.99.14 {ECO:0000313|EMBL:CCU61651.1};; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
Glycolate dehydrogenase, FAD-binding subunit GlcE n=1 Tax=Nitrosospira sp. APG3 RepID=M5DF96_9PROT
glcE; glycolate oxidase FAD binding subunit; K11472 glycolate oxidase FAD binding subunit
SCNpilot_expt_300_bf_scaffold_190_curated_5
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5494..6948)
DNA (1455bp) protein (485aa)
D-lactate dehydrogenase (cytochrome) (EC:1.1.2.4); K00104 glycolate oxidase [EC:1.1.3.15]
Glycolate dehydrogenase, subunit GlcD n=1 Tax=Nitrosospira sp. APG3 RepID=M5DQD4_9PROT
Glycolate oxidase subunit GlcD {ECO:0000313|EMBL:KIO49638.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
SCNpilot_expt_300_bf_scaffold_190_curated_6
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6945..7847)
DNA (903bp) protein (301aa)
2-hydroxy-3-oxopropionate reductase (EC:1.1.1.60); K00042 2-hydroxy-3-oxopropionate reductase [EC:1.1.1.60]
2-hydroxy-3-oxopropionate reductase n=1 Tax=Nitrosospira sp. APG3 RepID=M5DGP3_9PROT
Tartronate semialdehyde reductase {ECO:0000313|EMBL:KIO49657.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
SCNpilot_expt_300_bf_scaffold_190_curated_7
Nitrosospira multiformis, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8218..9372
DNA (1155bp) protein (385aa)
FAD-dependent pyridine nucleotide-disulfide oxidoreductase; K05297 rubredoxin-NAD+ reductase [EC:1.18.1.1]
FAD-dependent pyridine nucleotide-disulfide oxidoreductase n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2YCP2_NITMU
FAD-dependent pyridine nucleotide-disulfide oxidoreductase {ECO:0000313|EMBL:ABB73479.1}; TaxID=323848 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849).;"
SCNpilot_expt_300_bf_scaffold_190_curated_8
Nitrosospira multiformis, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9606..10286)
DNA (681bp) protein (227aa)
Uncharacterized protein n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2YCQ8_NITMU
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABB73463.1}; TaxID=323848 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849).;"
SCNpilot_expt_300_bf_scaffold_190_curated_9
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10367..10681)
DNA (315bp) protein (105aa)
Uncharacterized protein n=1 Tax=Nitrosospira sp. APG3 RepID=M5DH61_9PROT
Uncharacterized protein {ECO:0000313|EMBL:CCU61643.1}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
hypothetical protein
SCNpilot_expt_300_bf_scaffold_190_curated_10
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11141..11464
DNA (324bp) protein (108aa)
Uncharacterized protein n=1 Tax=Nitrosospira sp. APG3 RepID=M5DF94_9PROT
Uncharacterized protein {ECO:0000313|EMBL:CCU61641.1}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
hypothetical protein
SCNpilot_expt_300_bf_scaffold_190_curated_11
unknown

Not on your lists

11654..11788
DNA (135bp) protein (45aa)

This feature has no annotations

SCNpilot_expt_300_bf_scaffold_190_curated_12
Nitrosospira multiformis, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11773..12096
DNA (324bp) protein (108aa)
Proline-rich region n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2YAP9_NITMU
hypothetical protein
Proline-rich region {ECO:0000313|EMBL:ABB74172.1}; Flags: Precursor;; TaxID=323848 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849).;"
SCNpilot_expt_300_bf_scaffold_190_curated_13
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12106..12702
DNA (597bp) protein (199aa)
Proline-rich region n=1 Tax=Nitrosospira sp. APG3 RepID=M5DGU9_9PROT
Proline-rich region {ECO:0000313|EMBL:CCU61642.1}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
hypothetical protein
SCNpilot_expt_300_bf_scaffold_190_curated_14
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12752..14518)
DNA (1767bp) protein (589aa)
trxB1; thioredoxin reductase; K00384 thioredoxin reductase (NADPH) [EC:1.8.1.9]
hypothetical protein n=1 Tax=Janthinobacterium sp. CG3 RepID=UPI0003452850
Thioredoxin reductase {ECO:0000313|EMBL:KIO48545.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
SCNpilot_expt_300_bf_scaffold_190_curated_15
Rhodovulum sulfidophilum, Rhodovulum, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15113..16210)
DNA (1098bp) protein (366aa)
Uncharacterized protein {ECO:0000313|EMBL:BAQ70910.1}; TaxID=35806 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodovulum.;" source="Rhodovulum sulfidophilum (Rhodobacter sulfidophilus).;"
SCNpilot_expt_300_bf_scaffold_190_curated_16
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16521..16892)
DNA (372bp) protein (124aa)
Uncharacterized protein n=1 Tax=Nitrosospira sp. APG3 RepID=M5DSL5_9PROT
Uncharacterized protein {ECO:0000313|EMBL:CCU62385.1}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
hypothetical protein
SCNpilot_expt_300_bf_scaffold_190_curated_17
Xylella fastidiosa, Xylella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17271..17702)
DNA (432bp) protein (144aa)
Uncharacterized protein n=3 Tax=Xylella fastidiosa RepID=Q9PCL2_XYLFA
hypothetical protein
Carboxymuconolactone decarboxylase {ECO:0000313|EMBL:ETE31677.1}; TaxID=1214121 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xylella.;" source="Xylella fastidiosa 32.;"
SCNpilot_expt_300_bf_scaffold_190_curated_18
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18116..18859)
DNA (744bp) protein (248aa)
Uncharacterized protein n=1 Tax=Nitrosospira sp. APG3 RepID=M5DKK8_9PROT
Twitching motility protein PilT {ECO:0000313|EMBL:KIO50120.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
hypothetical protein; K09122 hypothetical protein
SCNpilot_expt_300_bf_scaffold_190_curated_19
unknown

Not on your lists

18910..19191
DNA (282bp) protein (94aa)

This feature has no annotations

SCNpilot_expt_300_bf_scaffold_190_curated_20
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19300..20385
DNA (1086bp) protein (362aa)
Alpha/beta hydrolase fold n=1 Tax=Nitrosospira sp. APG3 RepID=M5DFG0_9PROT
Alpha/beta hydrolase fold {ECO:0000313|EMBL:CCU61891.1}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
alpha/beta hydrolase fold protein; K07019
SCNpilot_expt_300_bf_scaffold_190_curated_21
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20691..21386
DNA (696bp) protein (232aa)
Uncharacterized protein n=1 Tax=Nitrosospira sp. APG3 RepID=M5DH13_9PROT
Uncharacterized protein {ECO:0000313|EMBL:CCU61593.1}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
SCNpilot_expt_300_bf_scaffold_190_curated_22
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21399..22556
DNA (1158bp) protein (386aa)
Uncharacterized protein n=1 Tax=Nitrosospira sp. APG3 RepID=M5DFA3_9PROT
Uncharacterized protein {ECO:0000313|EMBL:CCU61686.1}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
SCNpilot_expt_300_bf_scaffold_190_curated_23
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22553..24136
DNA (1584bp) protein (528aa)
Arylsulfatase regulator (Fe-S oxidoreductase) n=1 Tax=Nitrosospira sp. APG3 RepID=M5DGY3_9PROT
Arylsulfatase regulator (Fe-S oxidoreductase) {ECO:0000313|EMBL:CCU61687.1}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
His-Xaa-Ser system radical SAM maturase HxsB
SCNpilot_expt_300_bf_scaffold_190_curated_24
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24133..25386
DNA (1254bp) protein (418aa)
Uncharacterized protein n=1 Tax=Nitrosospira sp. APG3 RepID=M5DH99_9PROT
Uncharacterized protein {ECO:0000313|EMBL:CCU61688.1}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
SCNpilot_expt_300_bf_scaffold_190_curated_25
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25383..26090
DNA (708bp) protein (236aa)
Uncharacterized protein n=1 Tax=Nitrosospira sp. APG3 RepID=M5DGT3_9PROT
Uncharacterized protein {ECO:0000313|EMBL:CCU61689.1}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
SCNpilot_expt_300_bf_scaffold_190_curated_26
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26104..26697
DNA (594bp) protein (198aa)
TPR repeat n=1 Tax=Nitrosospira sp. APG3 RepID=M5DQI4_9PROT
TPR repeat {ECO:0000313|EMBL:CCU61690.1}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
hypothetical protein
SCNpilot_expt_300_bf_scaffold_190_curated_27
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26767..28725
DNA (1959bp) protein (653aa)
Uncharacterized protein n=1 Tax=Nitrosospira sp. APG3 RepID=M5DFA4_9PROT
Uncharacterized protein {ECO:0000313|EMBL:CCU61691.1}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
amine oxidase
SCNpilot_expt_300_bf_scaffold_190_curated_28
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28840..32568
DNA (3729bp) protein (1243aa)
metH; B12-dependent methionine synthase (EC:2.1.1.13); K00548 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13]
5-methyltetrahydrofolate--homocysteine methyltransferase n=1 Tax=Nitrosospira sp. APG3 RepID=M5DGY8_9PROT
Methionine synthase {ECO:0000313|EMBL:KIO49567.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
SCNpilot_expt_300_bf_scaffold_190_curated_29
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(32646..34778)
DNA (2133bp) protein (711aa)
GTP pyrophosphokinase, (P)ppGpp synthetase II / Guanosine-3',5'-bis(Diphosphate) 3'-pyrophosphohydrolase {ECO:0000313|EMBL:CCU61693.1}; EC=2.7.6.5 {ECO:0000313|EMBL:CCU61693.1};; EC=3.1.7.2 {ECO:0000313|EMBL:CCU61693.1};; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
(p)ppGpp synthetase SpoT/RelA (EC:2.7.6.5); K00951 GTP pyrophosphokinase [EC:2.7.6.5]
GTP pyrophosphokinase, (P)ppGpp synthetase II / Guanosine-3',5'-bis(Diphosphate) 3'-pyrophosphohydrolase n=1 Tax=Nitrosospira sp. APG3 RepID=M5DHA4_9PROT
SCNpilot_expt_300_bf_scaffold_190_curated_30
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(34941..35147)
DNA (207bp) protein (69aa)
DNA-directed RNA polymerase subunit omega {ECO:0000256|HAMAP-Rule:MF_00366, ECO:0000256|SAAS:SAAS00054253}; Short=RNAP omega subunit {ECO:0000256|HAMAP-Rule:MF_00366};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_00366, ECO:0000256|SAAS:SAAS00094401};; RNA polymerase omega subunit {ECO:0000256|HAMAP-Rule:MF_00366}; Transcriptase subunit omega {ECO:0000256|HAMAP-Rule:MF_00366}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosos
DNA-directed RNA polymerase subunit omega; K03060 DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
DNA-directed RNA polymerase subunit omega n=1 Tax=Nitrosospira sp. APG3 RepID=M5DGT9_9PROT
Displaying items 1-30 of 121 in total

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