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SCNpilot_expt_300_bf_scaffold_550_curated

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Displaying 16 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_300_bf_scaffold_550_curated_1
Delftia sp. RIT313, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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3..4232
DNA (4230bp) protein (1410aa)
Uncharacterized protein n=1 Tax=Delftia acidovorans CCUG 274B RepID=S2W547_DELAC
Amino acid adenylation domain protein {ECO:0000313|EMBL:EZP45284.1}; TaxID=1468410 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia sp. RIT313.;"
amino acid adenylation domain-containing protein
SCNpilot_expt_300_bf_scaffold_550_curated_2
Nitrosospira multiformis, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

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4375..4608
DNA (234bp) protein (78aa)
Transcriptional regulator/antitoxin, MazE n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2YAD3_NITMU
transcriptional regulator/antitoxin, MazE; K07172 antitoxin
Transcriptional regulator/antitoxin, MazE {ECO:0000313|EMBL:ABB74288.1}; TaxID=323848 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849).;"
SCNpilot_expt_300_bf_scaffold_550_curated_3
Cupriavidus basilensis, Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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4595..5002
DNA (408bp) protein (136aa)
Ribonuclease VapC {ECO:0000256|HAMAP-Rule:MF_00265}; Short=RNase VapC {ECO:0000256|HAMAP-Rule:MF_00265};; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00265};; Toxin VapC {ECO:0000256|HAMAP-Rule:MF_00265}; TaxID=1127483 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupriavidus basilensis OR16.;"
Ribonuclease VapC n=1 Tax=Cupriavidus basilensis OR16 RepID=H1SI98_9BURK
PilT protein-like
SCNpilot_expt_300_bf_scaffold_550_curated_4
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(5079..6035)
DNA (957bp) protein (319aa)
Lipolytic enzyme n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2Y7Z7_NITMU
Esterase {ECO:0000313|EMBL:KIO49789.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
lipolytic protein
SCNpilot_expt_300_bf_scaffold_550_curated_5
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(6069..8375)
DNA (2307bp) protein (769aa)
TonB-dependent siderophore receptor n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2Y7Z8_NITMU
TonB-dependent receptor {ECO:0000313|EMBL:KIO49788.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
TonB-dependent siderophore receptor; K02014 iron complex outermembrane recepter protein
SCNpilot_expt_300_bf_scaffold_550_curated_6
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(8442..9755)
DNA (1314bp) protein (438aa)
L-lysine 6-monooxygenase (NADPH) (EC:1.14.13.59); K03897 lysine N6-hydroxylase [EC:1.14.13.59]
L-lysine 6-monooxygenase (NADPH) n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2Y7Z9_NITMU
Ornithine monooxygenase {ECO:0000313|EMBL:KIO49787.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
SCNpilot_expt_300_bf_scaffold_550_curated_7
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(9773..10897)
DNA (1125bp) protein (375aa)
Uncharacterized protein n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2Y800_NITMU
Siderophore biosynthesis protein {ECO:0000313|EMBL:KIO49786.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
hypothetical protein
SCNpilot_expt_300_bf_scaffold_550_curated_8
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

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11060..12850
DNA (1791bp) protein (597aa)
Cyclic peptide transporter n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2Y801_NITMU
Peptide ABC transporter {ECO:0000313|EMBL:KIO49793.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
cyclic peptide transporter; K06160 putative ATP-binding cassette transporter
SCNpilot_expt_300_bf_scaffold_550_curated_9
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

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12875..14116
DNA (1242bp) protein (414aa)
PepSY-associated TM helix n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2Y802_NITMU
Peptidase {ECO:0000313|EMBL:KIO49792.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
PepSY-associated TM helix-containing protein
SCNpilot_expt_300_bf_scaffold_550_curated_10
Arthrospira platensis, Arthrospira, Oscillatoriales, Oscillatoriophycideae, Cyanobacteria, Bacteria

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14310..14873
DNA (564bp) protein (188aa)
Uncharacterized protein n=2 Tax=Arthrospira platensis RepID=K6EKG0_ARTPT
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:BAI88358.1}; TaxID=696747 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Oscillatoriales; Arthrospira.;" source="Arthrospira platensis (strain NIES-39 / IAM M-135) (Spirulina; platensis).;"
SCNpilot_expt_300_bf_scaffold_550_curated_11
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

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14870..15184
DNA (315bp) protein (105aa)
Uncharacterized protein n=1 Tax=Nitrosospira sp. APG3 RepID=M5DVJ4_9PROT
Uncharacterized protein {ECO:0000313|EMBL:KIO49998.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
SCNpilot_expt_300_bf_scaffold_550_curated_12
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15358..15621
DNA (264bp) protein (88aa)
Uncharacterized protein n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2Y723_NITMU
Uncharacterized protein {ECO:0000313|EMBL:KIO49993.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
hypothetical protein
SCNpilot_expt_300_bf_scaffold_550_curated_13
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15724..16107
DNA (384bp) protein (128aa)
Uncharacterized protein {ECO:0000313|EMBL:KIO49992.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
SCNpilot_expt_300_bf_scaffold_550_curated_14
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16401..17381
DNA (981bp) protein (327aa)
Ribonuclease BN, putative n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2Y725_NITMU
Membrane protein {ECO:0000313|EMBL:KIO49991.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
ribonuclease BN; K07058 membrane protein
SCNpilot_expt_300_bf_scaffold_550_curated_15
Kirrobacter mercurialis, Kirrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(17501..18142)
DNA (642bp) protein (214aa)
glutathione S-transferase (EC:2.5.1.18); K00799 glutathione S-transferase [EC:2.5.1.18]
Glutathione S-transferase n=1 Tax=Nitrobacter sp. Nb-311A RepID=A3WUS4_9BRAD
Glutathione S-transferase {ECO:0000313|EMBL:KHL24097.1}; TaxID=1572751 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Kirrobacter.;" source="Kirrobacter mercurialis.;"
SCNpilot_expt_300_bf_scaffold_550_curated_16
Nitrosospira multiformis, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18236..18508)
DNA (273bp) protein (91aa)
Glutathione-independent formaldehyde dehydrogenase n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2Y729_NITMU
zinc-containing alcohol dehydrogenase superfamily protein
Glutathione-independent formaldehyde dehydrogenase {ECO:0000313|EMBL:ABB75442.1}; TaxID=323848 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849).;"
Displaying 16 items

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