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SCNpilot_expt_300_bf_scaffold_256_curated_17

Organism: scnpilot_dereplicated_Nitrosospira_1

near complete RP 52 / 55 BSCG 51 / 51 ASCG 12 / 38
Location: comp(15555..16193)

Top 3 Functional Annotations

Value Algorithm Source
3-isopropylmalate dehydratase small subunit {ECO:0000256|HAMAP-Rule:MF_01031}; EC=4.2.1.33 {ECO:0000256|HAMAP-Rule:MF_01031, ECO:0000256|SAAS:SAAS00089872};; Alpha-IPM isomerase {ECO:0000256|HAMAP-Rule:MF_01031}; Isopropylmalate isomerase {ECO:0000256|HAMAP-Rule:MF_01031}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 83.4
  • Coverage: 211.0
  • Bit_score: 364
  • Evalue 1.00e-97
leuD; isopropylmalate isomerase small subunit (EC:4.2.1.33); K01704 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35] similarity KEGG
DB: KEGG
  • Identity: 80.1
  • Coverage: 211.0
  • Bit_score: 350
  • Evalue 3.30e-94
3-isopropylmalate dehydratase small subunit n=1 Tax=Nitrosospira sp. APG3 RepID=M5DVZ8_9PROT similarity UNIREF
DB: UNIREF100
  • Identity: 80.6
  • Coverage: 211.0
  • Bit_score: 354
  • Evalue 7.40e-95

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Taxonomy

Nitrosospira sp. NpAV → Nitrosospira → Nitrosomonadales → Betaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 639
GTGAAAAAATTCCTGTATTGCGACGGACTGGTGGCACCGCTCGACCGCGCCAACGTCGATACGGACGCCATCATTCCCAAGCAATTCCTTAAATCCATCAAGCGCTCGGGTTTCGGACAGAACCTGTTCGACGAGTGGCGGTATCTGGACCATGGCGAACCAGGGGTGGACTCTTCCCGGCGCAAGCCCAATCCGGATTTCATCCTTAACCAGCCCCGGTATCTCGGAGCCGAAATACTGCTCGCACGCGCAAACTTCGGTTGTGGTTCGAGCCGCGAGCATGCCCCCTGGGCATTGCAGGATTACGGCTTCAAGGTCATCATTGCACCCAGTTTTGCCGATATTTTTTTCAATAACTGCTTCAAGATCGGGCTGCTCGCCATTGGGCTGGACTCGAGCGTCGTCGATAAACTGTTCGATGAAGTAAATGCGGCCGAAGGCTACCGGTTGACCGTCGACCTGGAGGCCCAGTCGGTGCGAACCCCGCACGGCGAGTCTTTTTTCTTCGATATCGACCCTTTTCGCAAATACAGCCTGCTGAATGGCCTGGATGAGATTGGCCTGACCATGCAGCATGCGGAACAGATCGCCGCCTTTGAAGCCAGGCATGCGGCATCCCAGCCATGGCTGTTTCAGTGA
PROTEIN sequence
Length: 213
VKKFLYCDGLVAPLDRANVDTDAIIPKQFLKSIKRSGFGQNLFDEWRYLDHGEPGVDSSRRKPNPDFILNQPRYLGAEILLARANFGCGSSREHAPWALQDYGFKVIIAPSFADIFFNNCFKIGLLAIGLDSSVVDKLFDEVNAAEGYRLTVDLEAQSVRTPHGESFFFDIDPFRKYSLLNGLDEIGLTMQHAEQIAAFEARHAASQPWLFQ*