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SCNpilot_cont_300_bf_scaffold_1011_curated

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Displaying 27 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_300_bf_scaffold_1011_curated_1
Novosphingobium nitrogenifigens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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278..727
DNA (450bp) protein (150aa)
Putative uncharacterized protein n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1Z8S7_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EGD59330.1}; TaxID=983920 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium nitrogenifigens DSM 19370.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_1011_curated_2
Thalassospira profundimaris, Thalassospira, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(751..1053)
DNA (303bp) protein (101aa)
Helix-turn-helix domain-containing protein n=1 Tax=Thalassospira profundimaris WP0211 RepID=K2LN66_9PROT
Helix-turn-helix domain-containing protein {ECO:0000313|EMBL:EKF06377.1}; TaxID=1177928 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Thalassospira.;" source="Thalassospira profundimaris WP0211.;"
helix-turn-helix domain-containing protein
SCNpilot_cont_300_bf_scaffold_1011_curated_3
Novosphingobium nitrogenifigens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1194..1376
DNA (183bp) protein (61aa)
Putative uncharacterized protein n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1Z4N1_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EGD60442.1}; TaxID=983920 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium nitrogenifigens DSM 19370.;"
SCNpilot_cont_300_bf_scaffold_1011_curated_4
Novosphingobium nitrogenifigens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1908..2237
DNA (330bp) protein (110aa)
Single-stranded DNA-binding protein n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1Z4N0_9SPHN
Single-stranded DNA-binding protein {ECO:0000256|PIRNR:PIRNR002070}; TaxID=983920 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium nitrogenifigens DSM 19370.;"
single-strand binding protein/primosomal replication protein n
SCNpilot_cont_300_bf_scaffold_1011_curated_5
Novosphingobium nitrogenifigens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2289..2618
DNA (330bp) protein (110aa)
Putative uncharacterized protein n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1Z8T1_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EGD59326.1}; TaxID=983920 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium nitrogenifigens DSM 19370.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_1011_curated_6
Novosphingobium nitrogenifigens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4000..4959
DNA (960bp) protein (320aa)
Putative uncharacterized protein n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1Z8T3_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EGD59324.1}; TaxID=983920 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium nitrogenifigens DSM 19370.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_1011_curated_7
Sphingobium herbicidovorans, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5089..5478)
DNA (390bp) protein (130aa)
Uncharacterized protein n=1 Tax=Sphingobium baderi LL03 RepID=T0GN47_9SPHN
PilT protein {ECO:0000313|EMBL:KFG90829.1}; TaxID=1219045 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium herbicidovorans (strain ATCC 700291 / DSM 11019 / NBRC; 16415 / MH) (Sphingomonas herbicidovorans).;"
PilT protein
SCNpilot_cont_300_bf_scaffold_1011_curated_8
Sphingobium baderi, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5465..5737)
DNA (273bp) protein (91aa)
Uncharacterized protein n=1 Tax=Sphingobium baderi LL03 RepID=T0GQ42_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EQB02108.1}; TaxID=1114964 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium baderi LL03.;"
AbrB family transcriptional regulator
SCNpilot_cont_300_bf_scaffold_1011_curated_9
Novosphingobium nitrogenifigens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6037..6291
DNA (255bp) protein (85aa)
Plasmid stabilization protein n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1Z8T4_9SPHN
Plasmid stabilization protein {ECO:0000313|EMBL:EGD59323.1}; TaxID=983920 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium nitrogenifigens DSM 19370.;"
parD; plasmid stabilization protein
SCNpilot_cont_300_bf_scaffold_1011_curated_10
Novosphingobium nitrogenifigens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6288..6605
DNA (318bp) protein (106aa)
Plasmid stabilization protein n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1Z4M3_9SPHN
Plasmid stabilization protein {ECO:0000313|EMBL:EGD60434.1}; TaxID=983920 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium nitrogenifigens DSM 19370.;"
putative plasmid stabilization protein
SCNpilot_cont_300_bf_scaffold_1011_curated_11
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6706..7287
DNA (582bp) protein (194aa)
Site-specific recombinase, phage integrase family protein n=1 Tax=Erythrobacter litoralis (strain HTCC2594) RepID=Q2NBN0_ERYLH
Tyrosine recombinase XerC {ECO:0000313|EMBL:AKH44025.1}; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
site-specific recombinase, phage integrase
SCNpilot_cont_300_bf_scaffold_1011_curated_12
Novosphingobium sp. Rr 2-17, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7355..7690
DNA (336bp) protein (112aa)
Uncharacterized protein n=1 Tax=Novosphingobium sp. Rr 2-17 RepID=I9C3Y6_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EIZ78185.1}; TaxID=555793 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. Rr 2-17.;"
transposase
SCNpilot_cont_300_bf_scaffold_1011_curated_13
Sphingomonas sp. MM-1, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7840..9354
DNA (1515bp) protein (505aa)
Uncharacterized protein n=1 Tax=Sphingomonas sp. MM-1 RepID=M4RX59_9SPHN
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGH48131.1}; TaxID=745310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. MM-1.;"
SCNpilot_cont_300_bf_scaffold_1011_curated_14
Sphingomonas sanxanigenens, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9431..12091
DNA (2661bp) protein (887aa)
TonB-dependent receptor n=1 Tax=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) RepID=A5V9G7_SPHWW
Uncharacterized protein {ECO:0000313|EMBL:AHE54286.1}; TaxID=1123269 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sanxanigenens DSM 19645 = NX02.;"
TonB-dependent receptor
SCNpilot_cont_300_bf_scaffold_1011_curated_15
Novosphingobium pentaromativorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12314..12913
DNA (600bp) protein (200aa)
Putative uncharacterized protein n=1 Tax=Novosphingobium pentaromativorans US6-1 RepID=G6EBQ2_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EHJ61334.1}; TaxID=1088721 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium pentaromativorans US6-1.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_1011_curated_16
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12917..13219
DNA (303bp) protein (101aa)
Type IV secretory pathway, VirB2 component (Pilin) n=1 Tax=Novosphingobium sp. AP12 RepID=J2FUE1_9SPHN
TrbC/VIRB2 family protein {ECO:0000313|EMBL:AKH43939.1}; Flags: Precursor;; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
hypothetical protein; K03197 type IV secretion system protein VirB2
SCNpilot_cont_300_bf_scaffold_1011_curated_17
Novosphingobium lindaniclasticum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13226..13507
DNA (282bp) protein (94aa)
Type VI secretion protein n=1 Tax=Novosphingobium lindaniclasticum LE124 RepID=T0HZE4_9SPHN
Type VI secretion protein {ECO:0000313|EMBL:EQB17428.1}; TaxID=1096930 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium lindaniclasticum LE124.;"
type IV secretion system protein VirB3; K03198 type IV secretion system protein VirB3
SCNpilot_cont_300_bf_scaffold_1011_curated_18
Novosphingobium lindaniclasticum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13521..15932
DNA (2412bp) protein (804aa)
Type VI secretion protein n=1 Tax=Novosphingobium lindaniclasticum LE124 RepID=T0J660_9SPHN
Type VI secretion protein {ECO:0000313|EMBL:EQB17429.1}; TaxID=1096930 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium lindaniclasticum LE124.;"
type IV secretion system protein VirB4; K03199 type IV secretion system protein VirB4
SCNpilot_cont_300_bf_scaffold_1011_curated_19
Novosphingobium sp. PP1Y, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15929..17155
DNA (1227bp) protein (409aa)
Type IV secretion system protein VirB6 n=1 Tax=Novosphingobium sp. PP1Y RepID=F6IJ31_9SPHN
type IV secretion system protein VirB6; K03201 type IV secretion system protein VirB6
Type IV secretion system protein VirB6 {ECO:0000313|EMBL:CCA91657.1}; TaxID=702113 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. PP1Y.;"
SCNpilot_cont_300_bf_scaffold_1011_curated_20
Novosphingobium resinovorum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17152..18129
DNA (978bp) protein (326aa)
Type IV secretion system protein VirB9 n=1 Tax=Sphingomonas sp. LH128 RepID=J8VU42_9SPHN
Type IV secretion system protein VirB9 {ECO:0000313|EMBL:EZP81388.1}; Flags: Precursor;; TaxID=158500 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium resinovorum.;"
type IV secretion system protein B9; K03204 type IV secretion system protein VirB9
SCNpilot_cont_300_bf_scaffold_1011_curated_21
Novosphingobium sp. P6W, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18132..19232
DNA (1101bp) protein (367aa)
Type IV secretory pathway, VirB10 component n=1 Tax=Novosphingobium sp. AP12 RepID=J2FUE7_9SPHN
Scaffold2, whole genome shotgun sequence {ECO:0000313|EMBL:KIS33837.1}; TaxID=1609758 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. P6W.;"
type IV secretion system protein B10; K03195 type IV secretion system protein VirB10
SCNpilot_cont_300_bf_scaffold_1011_curated_22
Novosphingobium sp. Rr 2-17, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19229..20197
DNA (969bp) protein (323aa)
Type IV secretion system protein VirB11 n=1 Tax=Novosphingobium sp. Rr 2-17 RepID=I9WI78_9SPHN
Type IV secretion system protein VirB11 {ECO:0000313|EMBL:EIZ79918.1}; TaxID=555793 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. Rr 2-17.;"
type IV secretion system protein VirB11; K03196 type IV secretion system protein VirB11
SCNpilot_cont_300_bf_scaffold_1011_curated_23
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20233..20877
DNA (645bp) protein (215aa)
XRE family transcriptional regulator n=1 Tax=Sphingobium baderi LL03 RepID=T0G190_9SPHN
Phosphate regulon transcriptional regulatory protein PhoB {ECO:0000313|EMBL:AKH43944.1}; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
SCNpilot_cont_300_bf_scaffold_1011_curated_24
Sphingobium lucknowense, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21060..21308
DNA (249bp) protein (83aa)
Uncharacterized protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2GBH4_NOVAD
Uncharacterized protein {ECO:0000313|EMBL:KER35075.1}; TaxID=1450518 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium lucknowense F2.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_1011_curated_25
Kirrobacter mercurialis, Kirrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21370..21813
DNA (444bp) protein (148aa)
transposase n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B3ADF5
Transposase {ECO:0000313|EMBL:KHL24982.1}; TaxID=1572751 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Kirrobacter.;" source="Kirrobacter mercurialis.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_1011_curated_26
Sphingomonas sp. SKA58, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21810..22163
DNA (354bp) protein (118aa)
transposase ISAfe4 n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B707D1
Transposase and inactivated derivative {ECO:0000313|EMBL:EAT07217.1}; TaxID=314266 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. (strain SKA58).;"
IS66 Orf2 like; K07484 transposase
SCNpilot_cont_300_bf_scaffold_1011_curated_27
Sphingobium yanoikuyae, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22293..23399
DNA (1107bp) protein (369aa)
transposase IS66 n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B4F4D9
Uncharacterized protein {ECO:0000313|EMBL:EKU73342.1}; TaxID=883163 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium yanoikuyae ATCC 51230.;"
transposase
Displaying 27 items

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