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SCNpilot_cont_300_bf_scaffold_1185_curated

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Displaying 16 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_300_bf_scaffold_1185_curated_1
Novosphingobium lindaniclasticum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3..1112)
DNA (1110bp) protein (370aa)
transposase, partial n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B5E542
Uncharacterized protein {ECO:0000313|EMBL:EQB12535.1}; TaxID=1096930 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium lindaniclasticum LE124.;"
transposase
SCNpilot_cont_300_bf_scaffold_1185_curated_2
Novosphingobium lindaniclasticum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1535..1927)
DNA (393bp) protein (131aa)
transposase n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B53217
Uncharacterized protein {ECO:0000313|EMBL:EQB13022.1}; TaxID=1096930 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium lindaniclasticum LE124.;"
transposase; K07483 transposase
SCNpilot_cont_300_bf_scaffold_1185_curated_3
Sphingomonas sp. Ant20, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2187..2591)
DNA (405bp) protein (135aa)
UPI0003D6936F related cluster n=1 Tax=unknown RepID=UPI0003D6936F
MerR family transcriptional regulator {ECO:0000313|EMBL:KHA64812.1}; TaxID=104605 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. Ant20.;"
MerR family transcriptional regulator
SCNpilot_cont_300_bf_scaffold_1185_curated_4
Sphingobium yanoikuyae, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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2660..3313
DNA (654bp) protein (218aa)
hypothetical protein n=1 Tax=alpha proteobacterium LLX12A RepID=UPI00037E8DC4
Co/Zn/Cd efflux system component {ECO:0000313|EMBL:KEZ14279.1}; TaxID=13690 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium yanoikuyae (Sphingomonas yanoikuyae).;"
cation efflux protein
SCNpilot_cont_300_bf_scaffold_1185_curated_5
Sphingomonas sp. Ant20, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3276..3563)
DNA (288bp) protein (96aa)
TonB-dependent receptor plug n=1 Tax=Sphingobium chlorophenolicum L-1 RepID=F6F3G1_SPHCR
Ligand-gated channel {ECO:0000313|EMBL:KHA64813.1}; TaxID=104605 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. Ant20.;"
TonB-dependent receptor plug; K02014 iron complex outermembrane recepter protein
SCNpilot_cont_300_bf_scaffold_1185_curated_6
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3650..4078)
DNA (429bp) protein (143aa)
hypothetical protein n=1 Tax=Sphingobium xenophagum RepID=UPI0003653328
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABD26572.1}; Flags: Precursor;; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium aromaticivorans (strain DSM 12444 / F199).;"
SCNpilot_cont_300_bf_scaffold_1185_curated_7
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4140..4514)
DNA (375bp) protein (125aa)
hypothetical protein n=1 Tax=Sphingobium xenophagum RepID=UPI000369465B
Sphingomonas taxi strain 30a NODE_16, whole genome shotgun sequence {ECO:0000313|EMBL:KIU26873.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_1185_curated_8
Sphingobium ummariense, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4894..6987)
DNA (2094bp) protein (698aa)
copA; cation transport ATPase (EC:3.6.3.4); K01533 Cu2+-exporting ATPase [EC:3.6.3.4]
Copper-transporting P-type ATPase n=1 Tax=Sphingobium xenophagum RepID=UPI000373023A
Copper-transporting P-type ATPase {ECO:0000313|EMBL:EQB33216.1}; TaxID=1346791 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium ummariense RL-3.;"
SCNpilot_cont_300_bf_scaffold_1185_curated_9
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7283..7696)
DNA (414bp) protein (138aa)
hypothetical protein n=1 Tax=Sphingobium xenophagum RepID=UPI000361CFF5
copper resistance D; K07245 putative copper resistance protein D
Copper resistance D {ECO:0000313|EMBL:ABD26580.1}; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium aromaticivorans (strain DSM 12444 / F199).;"
SCNpilot_cont_300_bf_scaffold_1185_curated_10
Sphingobium japonicum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(8223..8606)
DNA (384bp) protein (128aa)
hypothetical protein n=1 Tax=Sphingobium xenophagum RepID=UPI000373C56E
copC; copper resistance protein CopC; K07156
Copper resistance protein CopC {ECO:0000313|EMBL:BAI95320.1}; TaxID=452662 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium japonicum (strain NBRC 101211 / UT26S).;"
SCNpilot_cont_300_bf_scaffold_1185_curated_11
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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9133..9450
DNA (318bp) protein (106aa)
hypothetical protein n=1 Tax=Sphingobium xenophagum RepID=UPI000371DE5D
heavy metal resistance protein
Heavy metal resistance protein {ECO:0000313|EMBL:BAK67775.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_cont_300_bf_scaffold_1185_curated_12
Sphingomonas sanxanigenens, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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9447..10013
DNA (567bp) protein (189aa)
hypothetical protein n=1 Tax=Sphingobium xenophagum RepID=UPI00035D50C6
FecI sigma-24 factor {ECO:0000313|EMBL:AKH18793.1}; TaxID=1123269 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sanxanigenens DSM 19645 = NX02.;"
rpoE; ECF-type sigma factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily
SCNpilot_cont_300_bf_scaffold_1185_curated_13
Novosphingobium subterraneum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10253..12007
DNA (1755bp) protein (585aa)
copper-binding protein n=1 Tax=Sphingobium xenophagum RepID=UPI0003748463
Putative multicopper oxidase {ECO:0000313|EMBL:KHS45212.1}; TaxID=48936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium subterraneum.;"
copper resistance protein CopA
SCNpilot_cont_300_bf_scaffold_1185_curated_14
Sphingobium baderi, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12004..13107
DNA (1104bp) protein (368aa)
hypothetical protein n=1 Tax=Sphingobium xenophagum RepID=UPI00037FD112
Copper resistance protein CopB {ECO:0000313|EMBL:EQB04103.1}; TaxID=1114964 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium baderi LL03.;"
copper resistance B; K07233 copper resistance protein B
SCNpilot_cont_300_bf_scaffold_1185_curated_15
Novosphingobium subterraneum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13129..14652
DNA (1524bp) protein (508aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=48936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium subterraneum.;"
PAS/PAC sensor signal transduction histidine kinase; K14986 two-component system, LuxR family, sensor kinase FixL [EC:2.7.13.3]
hypothetical protein n=1 Tax=Sphingobium xenophagum RepID=UPI000380409E
SCNpilot_cont_300_bf_scaffold_1185_curated_16
Novosphingobium subterraneum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14642..15250
DNA (609bp) protein (203aa)
hypothetical protein n=1 Tax=Sphingobium xenophagum RepID=UPI000364CCE8
Response regulator UhpA {ECO:0000313|EMBL:KHS49403.1}; TaxID=48936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium subterraneum.;"
two component LuxR family transcriptional regulator
Displaying 16 items

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