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SCNpilot_cont_1000_bf_scaffold_132_curated

Search features with annotation key words

Displaying items 1-30 of 165 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_1000_bf_scaffold_132_curated_1
Pandoraea apista, Pandoraea, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

37..339
DNA (303bp) protein (101aa)
LysR family transcriptional regulator n=1 Tax=Pandoraea sp. B-6 RepID=UPI00034C35A3
LysR family transcriptional regulator {ECO:0000313|EMBL:AJE98110.1}; TaxID=93218 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Pandoraea.;" source="Pandoraea apista.;"
LysR family transcriptional regulator
SCNpilot_cont_1000_bf_scaffold_132_curated_2
Pandoraea pnomenusa, Pandoraea, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(367..723)
DNA (357bp) protein (119aa)
hypothetical protein n=1 Tax=Pandoraea sp. B-6 RepID=UPI000345714E
Cytochrome C oxidase subunit IV {ECO:0000313|EMBL:AIU27396.1}; TaxID=93220 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Pandoraea.;" source="Pandoraea pnomenusa.;"
hypothetical protein
SCNpilot_cont_1000_bf_scaffold_132_curated_3
Pandoraea apista, Pandoraea, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(732..1424)
DNA (693bp) protein (231aa)
bb3-type cytochrome oxidase subunit IV n=1 Tax=Pandoraea sp. B-6 RepID=UPI0003484247
Bb3-type cytochrome oxidase subunit IV {ECO:0000313|EMBL:AJE98111.1}; TaxID=93218 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Pandoraea.;" source="Pandoraea apista.;"
coxC; cytochrome c oxidase, subunit III oxidoreductase protein
SCNpilot_cont_1000_bf_scaffold_132_curated_4
Pandoraea pnomenusa, Pandoraea, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1444..2079)
DNA (636bp) protein (212aa)
cytochrome c oxidase subunit III; K02276 cytochrome c oxidase subunit III [EC:1.9.3.1]
hypothetical protein n=1 Tax=Pandoraea sp. B-6 RepID=UPI00034D321D
Bb3-type cytochrome oxidase subunit III {ECO:0000313|EMBL:AHB08137.1}; TaxID=1416914 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Pandoraea.;" source="Pandoraea pnomenusa 3kgm.;"
SCNpilot_cont_1000_bf_scaffold_132_curated_5
Pandoraea sp. SD6-2, Pandoraea, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2076..3923)
DNA (1848bp) protein (616aa)
cytochrome C oxidase subunit I (EC:1.9.3.1); K02274 cytochrome c oxidase subunit I [EC:1.9.3.1]
cytochrome C oxidase n=1 Tax=Pandoraea sp. B-6 RepID=UPI000347056C
Cytochrome c oxidase subunit I {ECO:0000313|EMBL:EON11762.1}; TaxID=1286093 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Pandoraea.;" source="Pandoraea sp. SD6-2.;"
SCNpilot_cont_1000_bf_scaffold_132_curated_6
Pandoraea sp. SD6-2, Pandoraea, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4196..5677)
DNA (1482bp) protein (494aa)
coxM; Alternative cytochrome c oxidase polypeptide CoxM (EC:1.9.3.1)
hypothetical protein n=1 Tax=Pandoraea sp. B-6 RepID=UPI00037A7CAE
Cytochrome c oxidase subunit II {ECO:0000313|EMBL:EON11763.1}; TaxID=1286093 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Pandoraea.;" source="Pandoraea sp. SD6-2.;"
SCNpilot_cont_1000_bf_scaffold_132_curated_7
Pandoraea vervacti, Pandoraea, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6117..8084)
DNA (1968bp) protein (656aa)
Membrane protein n=1 Tax=Pandoraea pnomenusa 3kgm RepID=V5PZ05_9BURK
Capsular biosynthesis protein {ECO:0000313|EMBL:AJP60074.1}; TaxID=656178 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Pandoraea.;" source="Pandoraea vervacti.;"
polysaccharide biosynthesis protein CapD
SCNpilot_cont_1000_bf_scaffold_132_curated_8
Pandoraea pnomenusa, Pandoraea, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8068..8736)
DNA (669bp) protein (223aa)
UDP-phosphate galactose phosphotransferase n=1 Tax=Pandoraea pnomenusa 3kgm RepID=V5PZM4_9BURK
UDP-phosphate galactose phosphotransferase {ECO:0000313|EMBL:AHB08115.1}; TaxID=1416914 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Pandoraea.;" source="Pandoraea pnomenusa 3kgm.;"
sugar transferase; K13012 O-antigen biosynthesis protein WbqP
SCNpilot_cont_1000_bf_scaffold_132_curated_9
Pandoraea sp. SD6-2, Pandoraea, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8736..9770)
DNA (1035bp) protein (345aa)
UDP-N-acetylglucosamine 2-epimerase (EC:5.1.3.14); K01791 UDP-N-acetylglucosamine 2-epimerase [EC:5.1.3.14]
UDP-N-acetylglucosamine 2-epimerase n=1 Tax=Pandoraea sp. SD6-2 RepID=R7WWZ8_9BURK
UDP-N-acetylglucosamine 2-epimerase {ECO:0000313|EMBL:EON11766.1}; TaxID=1286093 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Pandoraea.;" source="Pandoraea sp. SD6-2.;"
SCNpilot_cont_1000_bf_scaffold_132_curated_10
Pandoraea sp. SD6-2, Pandoraea, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9876..10979)
DNA (1104bp) protein (368aa)
NAD-dependent epimerase/dehydratase n=1 Tax=Pandoraea sp. SD6-2 RepID=R7WWZ5_9BURK
NAD-dependent epimerase/dehydratase {ECO:0000313|EMBL:EON11767.1}; TaxID=1286093 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Pandoraea.;" source="Pandoraea sp. SD6-2.;"
NAD-dependent epimerase/dehydratase
SCNpilot_cont_1000_bf_scaffold_132_curated_11
Pandoraea sp. SD6-2, Pandoraea, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10982..12010)
DNA (1029bp) protein (343aa)
UDP-glucose 4-epimerase (EC:5.1.3.2)
UDP-glucose 4-epimerase n=1 Tax=Pandoraea sp. SD6-2 RepID=R7WX32_9BURK
UDP-glucose 4-epimerase {ECO:0000313|EMBL:EON11768.1}; TaxID=1286093 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Pandoraea.;" source="Pandoraea sp. SD6-2.;"
SCNpilot_cont_1000_bf_scaffold_132_curated_12
Pandoraea sp. SD6-2, Pandoraea, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12007..13203)
DNA (1197bp) protein (399aa)
Glycosyltransferase n=1 Tax=Pandoraea sp. SD6-2 RepID=R7WX38_9BURK
Glycosyltransferase {ECO:0000313|EMBL:EON11769.1}; TaxID=1286093 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Pandoraea.;" source="Pandoraea sp. SD6-2.;"
group glycosyltransferase
SCNpilot_cont_1000_bf_scaffold_132_curated_13
Bacillus simplex, Bacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(13287..13814)
DNA (528bp) protein (176aa)
Transferase hexapeptide repeat containing protein n=1 Tax=Caldithrix abyssi DSM 13497 RepID=H1XWL3_9BACT
Chloramphenicol acetyltransferase {ECO:0000313|EMBL:CEG33847.1}; TaxID=1478 species="Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Bacillus.;" source="Bacillus simplex.;"
hypothetical protein
SCNpilot_cont_1000_bf_scaffold_132_curated_14
Geobacter lovleyi, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13811..14968)
DNA (1158bp) protein (386aa)
Glycosyl transferase group 1 n=1 Tax=Geobacter lovleyi (strain ATCC BAA-1151 / DSM 17278 / SZ) RepID=B3E8U4_GEOLS
group 1 glycosyl transferase
Glycosyl transferase group 1 {ECO:0000313|EMBL:ACD95212.1}; TaxID=398767 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter lovleyi (strain ATCC BAA-1151 / DSM 17278 / SZ).;"
SCNpilot_cont_1000_bf_scaffold_132_curated_15
R_Fluviicola_43_260, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(14975..16243)
DNA (1269bp) protein (423aa)
Uncharacterized protein n=1 Tax=Achromobacter piechaudii HLE RepID=J4YVM4_9BURK
Tax=RIFCSPHIGHO2_02_FULL_Fluviicola_43_260_curated
SCNpilot_cont_1000_bf_scaffold_132_curated_16
Achromobacter piechaudii, Achromobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16274..17419)
DNA (1146bp) protein (382aa)
LPS biosynthesis protein WbpG n=1 Tax=Achromobacter piechaudii HLE RepID=J4PHA4_9BURK
LPS biosynthesis protein WbpG {ECO:0000313|EMBL:EJO33192.1}; TaxID=1156919 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Achromobacter.;" source="Achromobacter piechaudii HLE.;"
wbpG; LPS biosynthesis protein WbpG
SCNpilot_cont_1000_bf_scaffold_132_curated_17
BJP_IG2102_Syntrophobacterales_60_12, Syntrophobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17478..18257)
DNA (780bp) protein (260aa)
histidine biosynthesis protein; K02500 cyclase [EC:4.1.3.-]
Imidazoleglycerol phosphate synthase, cyclase subunit n=1 Tax=Achromobacter piechaudii HLE RepID=J4Z3C8_9BURK
Tax=BJP_IG2102_Syntrophobacterales_60_12
SCNpilot_cont_1000_bf_scaffold_132_curated_18
unknown

Not on your lists

18506..18853
DNA (348bp) protein (116aa)

This feature has no annotations

SCNpilot_cont_1000_bf_scaffold_132_curated_19
Achromobacter piechaudii, Achromobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18900..20360)
DNA (1461bp) protein (487aa)
O-antigen translocase n=1 Tax=Achromobacter piechaudii HLE RepID=J4J8X5_9BURK
O-antigen translocase {ECO:0000313|EMBL:EJO33189.1}; TaxID=1156919 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Achromobacter.;" source="Achromobacter piechaudii HLE.;"
O-antigen translocase
SCNpilot_cont_1000_bf_scaffold_132_curated_20
RLO_Burkholderiales_61_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20411..21490)
DNA (1080bp) protein (360aa)
UDP-N-acetylglucosamine 2-epimerase (EC:5.1.3.14); K13019 UDP-GlcNAc3NAcA epimerase [EC:5.1.3.23]
UDP-N-acetylglucosamine 2-epimerase n=1 Tax=Laribacter hongkongensis (strain HLHK9) RepID=C1DDF0_LARHH
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_61_40_curated
SCNpilot_cont_1000_bf_scaffold_132_curated_21
RLO_Burkholderiales_61_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21487..22599)
DNA (1113bp) protein (371aa)
bplC, wlbC; lipopolysaccharide biosynthesis protein; K13017 UDP-3-keto-D-GlcNAcA aminotransferase [EC:2.6.1.-]
hypothetical protein n=1 Tax=Rhizobium sp. JGI 0001005-K05 RepID=UPI00036AAF2A
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_61_40_curated
SCNpilot_cont_1000_bf_scaffold_132_curated_22
RLO_Burkholderiales_61_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22596..23156)
DNA (561bp) protein (187aa)
isoleucine patch superfamily acetyltransferase (EC:2.3.1.18); K13018 UDP-D-GlcNAc3NA acetyltransferase [EC:2.3.1.-]
hypothetical protein n=1 Tax=Rhizobium sp. JGI 0001005-K05 RepID=UPI0003626357
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_61_40_curated
SCNpilot_cont_1000_bf_scaffold_132_curated_23
RLO_Burkholderiales_61_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23158..24219)
DNA (1062bp) protein (354aa)
oxidoreductase domain containing protein; K13020 UDP-D-GlcNAcA oxidase [EC:1.1.1.-]
oxidoreductase n=1 Tax=Leeia oryzae RepID=UPI0003632FCA
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_61_40_curated
SCNpilot_cont_1000_bf_scaffold_132_curated_24
Chromobacterium violaceum, Chromobacterium, Neisseriales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24221..25525)
DNA (1305bp) protein (435aa)
udg; udpglucose 6-dehydrogenase (EC:1.1.1.22); K13015 UDP-N-acetyl-D-glucosamine dehydrogenase [EC:1.1.1.-] rbh
UDPglucose 6-dehydrogenase n=1 Tax=Chromobacterium violaceum (strain ATCC 12472 / DSM 30191 / JCM 1249 / NBRC 12614 / NCIMB 9131 / NCTC 9757) RepID=Q7NQK8_CHRVO
UDP-N-acetyl-D-glucosamine dehydrogenase {ECO:0000313|EMBL:KJH67420.1}; TaxID=536 species="Bacteria; Proteobacteria; Betaproteobacteria; Neisseriales; Chromobacteriaceae; Chromobacterium.;" source="Chromobacterium violaceum.;"
SCNpilot_cont_1000_bf_scaffold_132_curated_trna_2
unknown

Not on your lists

comp(25955..26027)
DNA (73bp)
transferRNA
SCNpilot_cont_1000_bf_scaffold_132_curated_25
Pandoraea pnomenusa, Pandoraea, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26119..27828)
DNA (1710bp) protein (570aa)
periplasmic 5'-nucleotidase, soxb homolog (EC:3.1.3.5)
Uncharacterized protein n=1 Tax=Pandoraea sp. SD6-2 RepID=R7WX09_9BURK
5'-nucleotidase {ECO:0000313|EMBL:KHQ96015.1}; TaxID=93220 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Pandoraea.;" source="Pandoraea pnomenusa.;"
SCNpilot_cont_1000_bf_scaffold_132_curated_26
Pandoraea pnomenusa, Pandoraea, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28148..28651)
DNA (504bp) protein (168aa)
hypothetical protein n=1 Tax=Pandoraea sp. B-6 RepID=UPI00034A5838
Alkyl hydroperoxide reductase {ECO:0000313|EMBL:KHQ96058.1}; TaxID=93220 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Pandoraea.;" source="Pandoraea pnomenusa.;"
thiol-disulfide isomerase and thioredoxins
SCNpilot_cont_1000_bf_scaffold_132_curated_27
Pandoraea pulmonicola, Pandoraea, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28952..29602)
DNA (651bp) protein (217aa)
hypothetical protein n=1 Tax=Pandoraea sp. B-6 RepID=UPI000344A104
SoxX protein {ECO:0000313|EMBL:AJC20350.1}; TaxID=93221 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Pandoraea.;" source="Pandoraea pulmonicola.;"
sulfur oxidation protein 1
SCNpilot_cont_1000_bf_scaffold_132_curated_28
Pandoraea sp. SD6-2, Pandoraea, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29622..30497)
DNA (876bp) protein (292aa)
SoxAX cytochrome complex subunit A {ECO:0000256|PIRNR:PIRNR038455}; EC=1.8.2.- {ECO:0000256|PIRNR:PIRNR038455};; Protein SoxA {ECO:0000256|PIRNR:PIRNR038455}; Sulfur oxidizing protein A {ECO:0000256|PIRNR:PIRNR038455}; Thiosulfate-oxidizing multienzyme system protein SoxA {ECO:0000256|PIRNR:PIRNR038455}; TaxID=1286093 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Pandoraea.;" source="Pandoraea sp. SD6-2.;"
hypothetical protein n=1 Tax=Pandoraea sp. B-6 RepID=UPI0003651215
sulfur oxidation protein 2
SCNpilot_cont_1000_bf_scaffold_132_curated_29
Pandoraea pulmonicola, Pandoraea, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30663..30974)
DNA (312bp) protein (104aa)
hypothetical protein n=1 Tax=Pandoraea sp. B-6 RepID=UPI00034D3A02
SoxZ {ECO:0000313|EMBL:AJC20351.1}; TaxID=93221 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Pandoraea.;" source="Pandoraea pulmonicola.;"
sulfur compound chelating protein SoxZ
Displaying items 1-30 of 165 in total

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