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SCNpilot_cont_1000_bf_scaffold_168_curated_58

Organism: scnpilot_dereplicated_Pandoraea_1

near complete RP 52 / 55 MC: 1 BSCG 51 / 51 ASCG 13 / 38 MC: 1
Location: 68124..71588

Top 3 Functional Annotations

Value Algorithm Source
Transcription-repair-coupling factor {ECO:0000256|HAMAP-Rule:MF_00969}; Short=TRCF {ECO:0000256|HAMAP-Rule:MF_00969};; EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_00969};; TaxID=573737 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Pandoraea.;" source="Pandoraea oxalativorans.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 96.7
  • Coverage: 999.99
  • Bit_score: 2211
  • Evalue 0.0
transcription-repair coupling factor; K03723 transcription-repair coupling factor (superfamily II helicase) [EC:3.6.4.-] similarity KEGG
DB: KEGG
  • Identity: 82.3
  • Coverage: 999.99
  • Bit_score: 1903
  • Evalue 0.0
helicase n=1 Tax=Pandoraea sp. B-6 RepID=UPI00038284D6 similarity UNIREF
DB: UNIREF100
  • Identity: 99.7
  • Coverage: 999.99
  • Bit_score: 2265
  • Evalue 0.0

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Taxonomy

Pandoraea oxalativorans → Pandoraea → Burkholderiales → Betaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 3465
ATGTCCGCCGCCAACGCTCTATCCCGTAATACCGCGCCTGTGCCGCTCGTGAAAGCGGGACAGCGTTACGCCTTTGCAGGCTTGCACGCGTCGAGCGACGCCCTGCTCATCGCCCGCTATTTCAACGACAACCGCGAGCGCCTGCCGTTGCTCGCCGTCGTGTGCGCCCAGGCCACCGATGCCCTGCGCCTGCAGCAGGAACTCACGTGGTACGCGCCCGACGCCCGAGTACGGCTGCTGCCCGACTGGGAAACGCTGCCGTACGACACGTTCTCGCCACATCAGGATCTCGTCTCCGAACGGCTCGCCACCCTGCACGACCTCGGGGAGAAGCGCTGCGACATCGTTCTGGTGCCCGCCACCACTGCGCTCTACCGCATGGCCCCCGCGAGCTTCATGGCGGCCTACACGTTCTTCTTCACGCAGGGCGAGCGGCTCGACGAAGCACGCCTGAAGTCGCAACTGACGCTGGCAGGCTACGAGCATGTGAGCCAAGTGATGCGGCCCGGTGAGTATTGTGTGCGCGGCGGACTGATCGACCTGTACCCGATGGGCTCCGCCCTGCCGTATCGTCTCGATCTGTTCGATGACACCGTCGACAGCATTCGCGCATTCGACCCCGACACGCAGCGCAGCCTGTATCCGGTCAAGGAAGTCCGCCTGCTGCCCGGGCGCGAATTCCCGTTCGACGACGCTGCCCGCACCGCCTTTCGCGGGCGCTGGCGCGAAGTGTTCGAAGGCGACCCGACCCGCAGCCCGATCTACAAGGACATCGGCAGCGGCGTGCCGTCGGCCGGCATCGAGTATTACCTGCCGCTGTTCTTCGACGAAACGGCCACCCTGTTCCACTATCTGCCCGCCGACGCCCAACTGGTGTTCGTGGGCGATCTCGACGCGGCCATCCACCGTTTCTGGAACGACACGCGTCAACGCTACAACTTCCTGTCGCACGATCGCGAGCGGCCGGTGCTGCCGCCCGAGCAACTGTTCCTGCTCGATCAGGACTTCTTCACGCTCGCCAAGCCGTTCGCCCGCCTGACGCTGCCTACGCCGAGCGACGGCAGTTGGGCCATCCCGTTGCCGACACTGGCCATCAACCGTCGTGCCGACGACCCGCTGGCCGCCCTGCGCGCCTACCTCGCCCGCACACCAGCCCGCGTGCTGCTGTGCGCCGACTCGGCCGGCCGGCGCGAGACGCTGCTGCAACTGCTGCATGACCATGACCTGCGCCCATCGTCCGTCGAGTCGTTCGAAGACTTCCTGACATCAGACGCTCGCTTTGCCATCGGCATCGCCCCGCTGGCCGCAGGCTTCCTGCTGCCGACGGAAGATCTCGCCTTCATCACGGAGAACGAGCTTTACGAAGGCCTCGCACGCCGCGCCGGCAAGCGCCGCCAGGAGCAGGCAACGTCGGTCGACTCGATGGTGCGAGATCTGGCCGAACTCAAGGTGGGCGACCCGGTCGTTCACAGCCAGCACGGCATCGGTCGCTATCAGGGCCTGGTCAGCATGGATCTCGGCGAAGGCGAGACCGAATTCCTGCATCTCGAATACTCGGGCGACAGCAAGCTGTACGTGCCCGTTTCGCAGTTGCATCTGATCTCGCGCTACAGCGGCGCCGATCCCGATACCGCACCGCTGCACTCGCTGGGCTCGGGCCAATGGGAAAAGGCGAAGCGCAAGGCGGCGCAGCAGATTCGCGATACCGCGGCCGAACTGCTCAACCTGTACGCCCGTCGTGCCGCGCGTTCCGGTTACGCGTTCGAACTGTCGCCGCGCGACTACGAGAAGTTCGCCGATAGCTTCGGCTTCGAGGAAACGCCGGATCAGGCGGCCGCCATTGCGGCCGTGATGAGCGACATGACGAGCGGCCGTCCGATGGACCGCCTCGTGTGCGGCGACGTCGGCTTCGGCAAGACCGAAGTGGCCTTGCGCGCCGCCTTCATTGCCGTGCTCGACGGCAAGCAGGTCGCCTTGCTGGCCCCGACCACGCTGCTCGCCGAACAGCACGCGCAAACCTTCTCCGATCGTTTTGCCGACTGGCCGGTACGCATCGCCGAACTCTCGCGCTTCAAGACGACCAAGGAAGTGAACGCGAGCGTGAAGGCCATCAACGAGGGACAAGTCGATATCGTGATCGGCACGCACAAGCTGCTGTCGAACGACATCCAGTTCCAACGTCTGGGCCTCGTCATCATCGACGAAGAACATCGTTTCGGCGTGCGGCAGAAGGAAGCCCTCAAGGCGCTGCGTGCCGAGGTGGACGTGCTCACCCTGACCGCCACCCCGATTCCCCGTACGCTCGGCATGTCGCTCGAAGGCCTGCGCGACTTCTCGGTCATCGCGACCGCACCGCAGAAGCGTCTGGCGATCAAGACCTTCGTGCGCCGCGAAGAGGATGGCGTCATCCGCGAAGCCATGCTGCGCGAACTCAAGCGCGGCGGACAGGTGTACTTCCTGCACAACGAAGTCGAAACCATCGAGAACCGCAAGGCACAGTTGGAAGCCCTGGTGCCCGAGGCCCGTATCGTCGTGGCGCACGGACAAATGCACGAACGCGATCTCGAACGCGTGATGCGCGACTTCGTCTCGCAGCGCGCCAACGTGCTGCTGTGTACCACCATCATCGAGACCGGCATCGACGTGCCGACCGCCAACACGATTCTGATGCATCGCGCGGACAAGTTCGGTCTGGCGCAATTGCACCAGTTGCGCGGGCGCGTCGGGCGCTCGCACCACCAGGCCTATGCCTATCTGCTCGTCCACGATCCGAAGGCGCTGACCAAGCAGGCACAGCGGCGTCTCGAAGCGATTCAGCAGATGGAAGAACTCGGCGCGGGCTTCTATCTCGCGATGCACGACCTAGAGATTCGCGGCGCGGGTGAAGTGCTGGGCGACAAGCAATCGGGCGAAATTCACGACATCGGGTTCCAGCTCTACACCGACATGCTGGCCGACGCCGTGAGCGCACTGAAAGCCGGACGCGAACCGGATCTCACCGCGCCGCTCTCGGCGACCACCGAGATCAATCTGCATGTCCCGGCCATCTTGCCGAGCGACTTCTGCGGCGACGTACAGGAGCGCCTCTCGCTGTACAAGCGCCTGGCCAACGGCACCCACGCCGACGCCATCGACACGATCCAGGAAGAACTCGTCGATCGCTTCGGCAAGCTGCCGCAGCAGGCGCAGGCGCTGATCGAGACGCACCGCCTGCGACTGCTCGCCAAGCCACTGGGTATCGTCAAGATCGACGCGAGCGAAGACGCCATCGCCCTGCAATTCGAGCCGACACCGCCCGTCGATCCGATGCGCATCATCGCGCTGGTGCAGACGCATCGCCATATCAAGCTCGCGGGACAGGACAAGCTGCGCATCGAAGCAAAGCACGTGCAACTGACCGATCGCGTCCGCGCGATCAAGGAGACACTGCGCGCGCTCGGCACGCCGAACGCCAAAGCGGCCTGA
PROTEIN sequence
Length: 1155
MSAANALSRNTAPVPLVKAGQRYAFAGLHASSDALLIARYFNDNRERLPLLAVVCAQATDALRLQQELTWYAPDARVRLLPDWETLPYDTFSPHQDLVSERLATLHDLGEKRCDIVLVPATTALYRMAPASFMAAYTFFFTQGERLDEARLKSQLTLAGYEHVSQVMRPGEYCVRGGLIDLYPMGSALPYRLDLFDDTVDSIRAFDPDTQRSLYPVKEVRLLPGREFPFDDAARTAFRGRWREVFEGDPTRSPIYKDIGSGVPSAGIEYYLPLFFDETATLFHYLPADAQLVFVGDLDAAIHRFWNDTRQRYNFLSHDRERPVLPPEQLFLLDQDFFTLAKPFARLTLPTPSDGSWAIPLPTLAINRRADDPLAALRAYLARTPARVLLCADSAGRRETLLQLLHDHDLRPSSVESFEDFLTSDARFAIGIAPLAAGFLLPTEDLAFITENELYEGLARRAGKRRQEQATSVDSMVRDLAELKVGDPVVHSQHGIGRYQGLVSMDLGEGETEFLHLEYSGDSKLYVPVSQLHLISRYSGADPDTAPLHSLGSGQWEKAKRKAAQQIRDTAAELLNLYARRAARSGYAFELSPRDYEKFADSFGFEETPDQAAAIAAVMSDMTSGRPMDRLVCGDVGFGKTEVALRAAFIAVLDGKQVALLAPTTLLAEQHAQTFSDRFADWPVRIAELSRFKTTKEVNASVKAINEGQVDIVIGTHKLLSNDIQFQRLGLVIIDEEHRFGVRQKEALKALRAEVDVLTLTATPIPRTLGMSLEGLRDFSVIATAPQKRLAIKTFVRREEDGVIREAMLRELKRGGQVYFLHNEVETIENRKAQLEALVPEARIVVAHGQMHERDLERVMRDFVSQRANVLLCTTIIETGIDVPTANTILMHRADKFGLAQLHQLRGRVGRSHHQAYAYLLVHDPKALTKQAQRRLEAIQQMEELGAGFYLAMHDLEIRGAGEVLGDKQSGEIHDIGFQLYTDMLADAVSALKAGREPDLTAPLSATTEINLHVPAILPSDFCGDVQERLSLYKRLANGTHADAIDTIQEELVDRFGKLPQQAQALIETHRLRLLAKPLGIVKIDASEDAIALQFEPTPPVDPMRIIALVQTHRHIKLAGQDKLRIEAKHVQLTDRVRAIKETLRALGTPNAKAA*