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SCNpilot_cont_300_bf_scaffold_105_curated

Search features with annotation key words

Displaying items 1-30 of 994 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_300_bf_scaffold_105_curated_1
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20..508
DNA (489bp) protein (163aa)
RND efflux system, outer membrane lipoprotein, NodT n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QIB4_NITHX
RND efflux system, outer membrane lipoprotein, NodT
RND efflux system, outer membrane lipoprotein, NodT {ECO:0000313|EMBL:ABE64033.1}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCNpilot_cont_300_bf_scaffold_105_curated_2
Methylocella silvestris, Methylocella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1093..1848)
DNA (756bp) protein (252aa)
hypothetical protein; K09761 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193]
Ribosomal RNA small subunit methyltransferase E {ECO:0000256|PIRNR:PIRNR015601}; EC=2.1.1.193 {ECO:0000256|PIRNR:PIRNR015601};; TaxID=395965 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Beijerinckiaceae; Methylocella.;" source="Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906).;"
Ribosomal RNA small subunit methyltransferase E n=1 Tax=Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906) RepID=B8ETH6_METSB
SCNpilot_cont_300_bf_scaffold_105_curated_3
Methylocystis sp. SC2, Methylocystis, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2123..2575
DNA (453bp) protein (151aa)
hypothetical protein n=1 Tax=Methylocystis parvus RepID=UPI0002DF3B44
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCJ06088.1}; TaxID=187303 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylocystaceae; Methylocystis.;" source="Methylocystis sp. (strain SC2).;"
SCNpilot_cont_300_bf_scaffold_105_curated_4
Beijerinckia indica, Beijerinckia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2684..3532
DNA (849bp) protein (283aa)
4-hydroxybenzoate polyprenyltransferase; K03179 4-hydroxybenzoate octaprenyltransferase [EC:2.5.1.-]
4-hydroxybenzoate octaprenyltransferase {ECO:0000256|SAAS:SAAS00077846}; EC=2.5.1.- {ECO:0000256|SAAS:SAAS00077835};; TaxID=395963 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Beijerinckiaceae; Beijerinckia.;" source="Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB; 8712).;"
4-hydroxybenzoate polyprenyl transferase n=1 Tax=Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB 8712) RepID=B2IH79_BEII9
SCNpilot_cont_300_bf_scaffold_105_curated_5
Methylocystis sp. SC2, Methylocystis, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3539..4078)
DNA (540bp) protein (180aa)
hypothetical protein n=1 Tax=Methylosinus sp. LW4 RepID=UPI0003638BAA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCJ05980.1}; TaxID=187303 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylocystaceae; Methylocystis.;" source="Methylocystis sp. (strain SC2).;"
SCNpilot_cont_300_bf_scaffold_105_curated_6
Azorhizobium caulinodans, Azorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4271..5638)
DNA (1368bp) protein (456aa)
glutamate--cysteine ligase; K01919 glutamate--cysteine ligase [EC:6.3.2.2]
glutamate--cysteine ligase n=1 Tax=Xanthobacteraceae RepID=UPI00035C10CE
Glutamate-cysteine ligase {ECO:0000313|EMBL:BAF88965.1}; TaxID=438753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Azorhizobium.;" source="Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / JCM 20966 /; NBRC 14845 / NCIMB 13405 / ORS 571).;"
SCNpilot_cont_300_bf_scaffold_105_curated_7
unknown

Not on your lists

5896..6066
DNA (171bp) protein (57aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_105_curated_8
Hyphomicrobium nitrativorans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6094..6672)
DNA (579bp) protein (193aa)
hypothetical protein n=1 Tax=Methyloferula stellata RepID=UPI000375F2C8
Uncharacterized protein {ECO:0000313|EMBL:AHB47785.1}; TaxID=1029756 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium nitrativorans NL23.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_105_curated_9
Methylocella silvestris, Methylocella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6807..7547
DNA (741bp) protein (247aa)
hypothetical protein n=1 Tax=Methylosinus sp. LW4 RepID=UPI00037C7EBF
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACK49077.1}; TaxID=395965 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Beijerinckiaceae; Methylocella.;" source="Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906).;"
SCNpilot_cont_300_bf_scaffold_105_curated_10
Microvirga aerilata, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7577..8881)
DNA (1305bp) protein (435aa)
nucleotide sugar dehydrogenase; K00012 UDPglucose 6-dehydrogenase [EC:1.1.1.22]
Nucleotide sugar dehydrogenase n=1 Tax=Microvirga sp. WSM3557 RepID=I4YNK5_9RHIZ
UDP-glucose 6-dehydrogenase {ECO:0000313|EMBL:KFG66582.1}; TaxID=670292 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga aerilata.;"
SCNpilot_cont_300_bf_scaffold_105_curated_11
Azoarcus sp. BH72, Azoarcus, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9006..10199
DNA (1194bp) protein (398aa)
nahG; salicylate hydroxylase (EC:1.14.13.1); K00480 salicylate hydroxylase [EC:1.14.13.1]
Putative salicylate 1-monooxygenase {ECO:0000313|EMBL:CAL95039.1}; EC=1.14.13.1 {ECO:0000313|EMBL:CAL95039.1};; TaxID=62928 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Azoarcus.;" source="Azoarcus sp. (strain BH72).;"
salicylate hydroxylase n=1 Tax=Marinobacterium rhizophilum RepID=UPI0003759E05
SCNpilot_cont_300_bf_scaffold_105_curated_12
R_Burkholderiales_69_20, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10196..10654
DNA (459bp) protein (153aa)
Transcriptional regulatory protein n=1 Tax=Labrenzia aggregata IAM 12614 RepID=A0P3R8_9RHOB
MarR family transcriptional regulator
Tax=RIFCSPHIGHO2_12_FULL_Burkholderiales_69_20_curated
SCNpilot_cont_300_bf_scaffold_105_curated_13
Methylocella silvestris, Methylocella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10875..12233
DNA (1359bp) protein (453aa)
hypothetical protein n=1 Tax=Methyloferula stellata RepID=UPI000373882E
MATE efflux family protein
MATE efflux family protein {ECO:0000313|EMBL:ACK50776.1}; TaxID=395965 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Beijerinckiaceae; Methylocella.;" source="Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906).;"
SCNpilot_cont_300_bf_scaffold_105_curated_14
Methylocella silvestris, Methylocella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12282..13190
DNA (909bp) protein (303aa)
Uncharacterized protein n=1 Tax=Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906) RepID=B8ELZ6_METSB
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACK50777.1}; TaxID=395965 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Beijerinckiaceae; Methylocella.;" source="Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906).;"
SCNpilot_cont_300_bf_scaffold_105_curated_15
Methylobacterium sp. 4-46, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13194..14069)
DNA (876bp) protein (292aa)
Short-chain dehydrogenase/reductase SDR n=1 Tax=Methylobacterium sp. (strain 4-46) RepID=B0UFU7_METS4
short-chain dehydrogenase/reductase SDR; K13775 citronellol/citronellal dehydrogenase
Short-chain dehydrogenase/reductase SDR {ECO:0000313|EMBL:ACA16831.1}; TaxID=426117 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium sp. (strain 4-46).;"
SCNpilot_cont_300_bf_scaffold_105_curated_16
Methylobacterium aquaticum, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14092..14841)
DNA (750bp) protein (250aa)
Enoyl-CoA hydratase/isomerase n=1 Tax=Methylobacterium nodulans (strain ORS2060 / LMG 21967) RepID=B8IGR6_METNO
CaiD protein {ECO:0000313|EMBL:BAQ44951.1}; TaxID=270351 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium aquaticum.;"
enoyl-CoA hydratase/isomerase
SCNpilot_cont_300_bf_scaffold_105_curated_17
Microvirga aerilata, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14838..16610)
DNA (1773bp) protein (591aa)
Acyl-CoA dehydrogenase n=1 Tax=Microvirga sp. WSM3557 RepID=I4YQ55_9RHIZ
Acyl-CoA dehydrogenase {ECO:0000313|EMBL:KFG69788.1}; TaxID=670292 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga aerilata.;"
acyl-CoA dehydrogenase domain-containing protein
SCNpilot_cont_300_bf_scaffold_105_curated_18
Microvirga lotononidis, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16760..17743
DNA (984bp) protein (328aa)
Threonylcarbamoyl-AMP synthase {ECO:0000256|PIRNR:PIRNR004930}; Short=TC-AMP synthase {ECO:0000256|PIRNR:PIRNR004930};; EC=2.7.7.87 {ECO:0000256|PIRNR:PIRNR004930};; L-threonylcarbamoyladenylate synthase {ECO:0000256|PIRNR:PIRNR004930}; TaxID=864069 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga lotononidis.;"
Sua5/YciO/YrdC/YwlC family protein n=1 Tax=Microvirga sp. WSM3557 RepID=I4YQ54_9RHIZ
SUA5/yciO/yrdC domain-containing protein; K07566 tRNA threonylcarbamoyladenosine biosynthesis protein rbh
SCNpilot_cont_300_bf_scaffold_105_curated_19
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17759..18751)
DNA (993bp) protein (331aa)
hypothetical protein n=1 Tax=Massilia niastensis RepID=UPI00037D28DC
3-hydroxyacyl-CoA dehydrogenase/enoyl-CoA hydratase/3-hydroxybutyryl-CoA epimerase {ECO:0000313|EMBL:KFC75589.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_105_curated_20
Methylocystis sp. SC2, Methylocystis, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18946..19434
DNA (489bp) protein (163aa)
ApaG n=1 Tax=Methylocystis parvus RepID=UPI0002EE7469
apaG; protein ApaG
Protein ApaG {ECO:0000256|HAMAP-Rule:MF_00791, ECO:0000256|SAAS:SAAS00014786}; TaxID=187303 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylocystaceae; Methylocystis.;" source="Methylocystis sp. (strain SC2).;"
SCNpilot_cont_300_bf_scaffold_105_curated_21
Beijerinckia indica, Beijerinckia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19458..20630
DNA (1173bp) protein (391aa)
acetylornithine deacetylase ArgE; K01438 acetylornithine deacetylase [EC:3.5.1.16]
Acetylornithine deacetylase {ECO:0000256|SAAS:SAAS00063950}; EC=3.5.1.16 {ECO:0000256|SAAS:SAAS00063953};; TaxID=395963 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Beijerinckiaceae; Beijerinckia.;" source="Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB; 8712).;"
acetylornithine deacetylase n=1 Tax=Methyloferula stellata RepID=UPI000376ACBB
SCNpilot_cont_300_bf_scaffold_105_curated_22
unknown

Not on your lists

20753..20923
DNA (171bp) protein (57aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_105_curated_23
Methylocystis sp. SC2, Methylocystis, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20951..21550
DNA (600bp) protein (200aa)
hypothetical protein n=1 Tax=Methyloferula stellata RepID=UPI00035F6928
electron transport protein SCO1/SenC
Electron transport protein SCO1/SenC {ECO:0000313|EMBL:CCJ08357.1}; TaxID=187303 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylocystaceae; Methylocystis.;" source="Methylocystis sp. (strain SC2).;"
SCNpilot_cont_300_bf_scaffold_105_curated_24
unknown

Not on your lists

21576..21851
DNA (276bp) protein (92aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_105_curated_25
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21990..22838)
DNA (849bp) protein (283aa)
Extracellular solute-binding protein family 3 n=1 Tax=Rhodopseudomonas palustris (strain DX-1) RepID=E6VF00_RHOPX
family 3 extracellular solute-binding protein
Extracellular solute-binding protein family 3 {ECO:0000313|EMBL:ADU46403.1}; TaxID=652103 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain DX-1).;"
SCNpilot_cont_300_bf_scaffold_105_curated_26
Methylocella silvestris, Methylocella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23073..24779
DNA (1707bp) protein (569aa)
lysK; lysyl-tRNA synthetase (EC:6.1.1.6); K04566 lysyl-tRNA synthetase, class I [EC:6.1.1.6]
Lysine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00177}; EC=6.1.1.6 {ECO:0000256|HAMAP-Rule:MF_00177};; Lysyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00177}; TaxID=395965 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Beijerinckiaceae; Methylocella.;" source="Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906).;"
Lysine--tRNA ligase n=1 Tax=Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906) RepID=B8EMK1_METSB
SCNpilot_cont_300_bf_scaffold_105_curated_27
alpha proteobacterium MA2, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24830..25600
DNA (771bp) protein (257aa)
hypothetical protein n=1 Tax=Henriciella marina RepID=UPI000381AA04
Conserved protein {ECO:0000313|EMBL:GAK44919.1}; TaxID=1333998 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium MA2.;"
conserved membrane protein of unknown function
SCNpilot_cont_300_bf_scaffold_105_curated_28
Rhodovulum sp. PH10, Rhodovulum, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25607..26248)
DNA (642bp) protein (214aa)
DNA-binding protein n=1 Tax=Methylosinus sp. LW4 RepID=UPI00037F6C0D
Peptidase S24 {ECO:0000313|EMBL:EJW12321.1}; TaxID=1187851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodovulum.;" source="Rhodovulum sp. PH10.;"
putative phage repressor
SCNpilot_cont_300_bf_scaffold_105_curated_29
Roseivivax halodurans, Roseivivax, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26427..26768
DNA (342bp) protein (114aa)
hypothetical protein n=1 Tax=Loktanella hongkongensis RepID=UPI00036DFD17
Uncharacterized protein {ECO:0000313|EMBL:ETX13986.1}; TaxID=1449350 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Roseivivax.;" source="Roseivivax halodurans JCM 10272.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_105_curated_30
Methylocella silvestris, Methylocella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26768..27847
DNA (1080bp) protein (360aa)
dihydroorotate dehydrogenase; K00226 dihydroorotate dehydrogenase (fumarate) [EC:1.3.98.1]
Dihydroorotate dehydrogenase (quinone) {ECO:0000256|HAMAP-Rule:MF_00225, ECO:0000256|SAAS:SAAS00084821}; EC=1.3.5.2 {ECO:0000256|HAMAP-Rule:MF_00225, ECO:0000256|SAAS:SAAS00084821};; DHOdehase {ECO:0000256|HAMAP-Rule:MF_00225}; Dihydroorotate oxidase {ECO:0000256|HAMAP-Rule:MF_00225}; TaxID=395965 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Beijerinckiaceae; Methylocella.;" source="Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906).;"
hypothetical protein n=1 Tax=Methyloferula stellata RepID=UPI00037C4D5B
Displaying items 1-30 of 994 in total

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