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SCNpilot_cont_300_bf_scaffold_1358_curated

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Displaying 23 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_300_bf_scaffold_1358_curated_1
unknown

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2..91
DNA (90bp) protein (30aa)
Elongation factor Tu n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8P7E0_9BRAD
SCNpilot_cont_300_bf_scaffold_1358_curated_2
Caulobacter sp. K31, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

204..524
DNA (321bp) protein (107aa)
hypothetical protein n=1 Tax=Methylocystis parvus RepID=UPI0002FBA223
hypothetical protein
UPF0145 protein Caul_3365 {ECO:0000256|HAMAP-Rule:MF_00338}; TaxID=366602 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter sp. (strain K31).;"
SCNpilot_cont_300_bf_scaffold_1358_curated_3
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

541..1545
DNA (1005bp) protein (335aa)
fatty acid desaturase; K04712 sphingolipid delta-4 desaturase [EC:1.14.-.-]
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PSU6_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS41438.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
SCNpilot_cont_300_bf_scaffold_1358_curated_4
unknown

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comp(1790..2098)
DNA (309bp) protein (103aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_1358_curated_5
Legionella longbeachae, Legionella, Legionellales, Gammaproteobacteria, Proteobacteria, Bacteria

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2268..2678
DNA (411bp) protein (137aa)
Uncharacterized protein n=2 Tax=Legionella longbeachae RepID=D3HMA1_LEGLN
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBJ13590.1}; TaxID=661367 species="Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales; Legionellaceae; Legionella.;" source="Legionella longbeachae serogroup 1 (strain NSW150).;"
SCNpilot_cont_300_bf_scaffold_1358_curated_6
unknown

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comp(2688..2927)
DNA (240bp) protein (80aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_1358_curated_7
unknown

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3478..3933
DNA (456bp) protein (152aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_1358_curated_8
Afipia sp. P52-10, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4062..5627
DNA (1566bp) protein (522aa)
hypothetical protein n=1 Tax=Methylopila sp. M107 RepID=UPI00036DA1DF
Sodium:proton antiporter {ECO:0000313|EMBL:ETR76793.1}; TaxID=1429916 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. P52-10.;"
Na+/H+ antiporter; K03316 monovalent cation:H+ antiporter, CPA1 family
SCNpilot_cont_300_bf_scaffold_1358_curated_9
Burkholderia pseudomallei, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5786..6760)
DNA (975bp) protein (325aa)
2-dehydropantoate 2-reductase (EC:1.1.1.169); K00077 2-dehydropantoate 2-reductase [EC:1.1.1.169]
2-dehydropantoate 2-reductase n=1 Tax=Acidovorax avenae RepID=UPI0002DF44B5
2-dehydropantoate 2-reductase family protein {ECO:0000313|EMBL:KGS06912.1}; TaxID=1434929 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; pseudomallei group.;" source="Burkholderia pseudomallei ABCPW 111.;"
SCNpilot_cont_300_bf_scaffold_1358_curated_10
GWA2_Curvibacter_64_110_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(6794..7579)
DNA (786bp) protein (262aa)
Class ii aldolase/adducin family protein n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MJC6_9BURK
class II aldolase/adducin family protein
Tax=GWA2_Curvibacter_64_110_curated
SCNpilot_cont_300_bf_scaffold_1358_curated_11
Desulfovibrio sp. FW1012B, Desulfovibrio, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7790..8179
DNA (390bp) protein (130aa)
Uncharacterized protein n=1 Tax=Desulfovibrio sp. FW1012B RepID=G7QEC1_9DELT
Uncharacterized protein {ECO:0000313|EMBL:EHJ46015.1}; TaxID=644968 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Desulfovibrio.;" source="Desulfovibrio sp. FW1012B.;"
SCNpilot_cont_300_bf_scaffold_1358_curated_12
Beijerinckia indica, Beijerinckia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8347..8538
DNA (192bp) protein (64aa)
Protein translocase subunit SecE n=1 Tax=Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB 8712) RepID=B2IK49_BEII9
preprotein translocase subunit SecE; K03073 preprotein translocase subunit SecE
Protein translocase subunit SecE {ECO:0000256|HAMAP-Rule:MF_00422}; TaxID=395963 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Beijerinckiaceae; Beijerinckia.;" source="Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB; 8712).;"
SCNpilot_cont_300_bf_scaffold_1358_curated_13
Beijerinckia indica, Beijerinckia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8553..9083
DNA (531bp) protein (177aa)
transcription antitermination protein NusG n=1 Tax=Methyloferula stellata RepID=UPI00037EA32B
NusG antitermination factor; K02601 transcriptional antiterminator NusG
Transcription termination/antitermination protein NusG {ECO:0000256|HAMAP-Rule:MF_00948, ECO:0000256|SAAS:SAAS00078489}; TaxID=395963 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Beijerinckiaceae; Beijerinckia.;" source="Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB; 8712).;"
SCNpilot_cont_300_bf_scaffold_1358_curated_14
Methylocystis sp. SC2, Methylocystis, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


9221..9667
DNA (447bp) protein (149aa)
50S ribosomal protein L11 n=1 Tax=Methylocystis parvus RepID=UPI0002EDCAB8
rplK; 50S ribosomal protein L11
50S ribosomal protein L11 {ECO:0000256|HAMAP-Rule:MF_00736, ECO:0000313|EMBL:CCJ07439.1}; TaxID=187303 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylocystaceae; Methylocystis.;" source="Methylocystis sp. (strain SC2).;"
SCNpilot_cont_300_bf_scaffold_1358_curated_15
Methylocella silvestris, Methylocella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


9672..10382
DNA (711bp) protein (237aa)
50S ribosomal protein L1 n=1 Tax=Methyloferula stellata RepID=UPI000365218E
rplA; 50S ribosomal protein L1; K02863 large subunit ribosomal protein L1
50S ribosomal protein L1 {ECO:0000255|HAMAP-Rule:MF_01318}; TaxID=395965 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Beijerinckiaceae; Methylocella.;" source="Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906).;"
SCNpilot_cont_300_bf_scaffold_1358_curated_16
Methylocystis sp. SC2, Methylocystis, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


10908..11423
DNA (516bp) protein (172aa)
50S ribosomal protein L10 n=1 Tax=Methylocystis rosea RepID=UPI00037DAB01
rplJ; 50S ribosomal protein L10
50S ribosomal protein L10 {ECO:0000256|HAMAP-Rule:MF_00362, ECO:0000256|RuleBase:RU003636}; TaxID=187303 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylocystaceae; Methylocystis.;" source="Methylocystis sp. (strain SC2).;"
SCNpilot_cont_300_bf_scaffold_1358_curated_17
Methylobacterium aquaticum, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


11483..11860
DNA (378bp) protein (126aa)
50S ribosomal protein L7/L12 n=1 Tax=Methylobacterium sp. (strain 4-46) RepID=RL7_METS4
50S ribosomal protein L7/L12 {ECO:0000256|HAMAP-Rule:MF_00368}; TaxID=270351 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium aquaticum.;"
rplL; 50S ribosomal protein L7/L12; K02935 large subunit ribosomal protein L7/L12
SCNpilot_cont_300_bf_scaffold_1358_curated_18
R_Rhodospirillales_65_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12006..13517)
DNA (1512bp) protein (504aa)
RNA polymerase beta subunit (Fragment) n=1 Tax=Bradyrhizobium sp. SEMIA 6002 RepID=F5B5B4_9BRAD
Tax=RIFCSPLOWO2_01_FULL_Rhodospirillales_65_14_curated
SCNpilot_cont_300_bf_scaffold_1358_curated_19
Beijerinckia indica, Beijerinckia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13776..16223
DNA (2448bp) protein (816aa)
rpoB; DNA-directed RNA polymerase subunit beta; K03043 DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
DNA-directed RNA polymerase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; Short=RNAP subunit beta {ECO:0000256|HAMAP-Rule:MF_01321};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_01321};; RNA polymerase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; Transcriptase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; TaxID=395963 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Beijerinckiaceae; Beijerinckia.;" source="Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB; 8712).;"
DNA-directed RNA polymerase subunit beta n=1 Tax=Methyloferula stellata RepID=UPI00037E4BC5
SCNpilot_cont_300_bf_scaffold_1358_curated_20
Beijerinckia indica, Beijerinckia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16323..20432
DNA (4110bp) protein (1370aa)
DNA-directed RNA polymerase subunit beta' {ECO:0000255|HAMAP-Rule:MF_01322}; Short=RNAP subunit beta' {ECO:0000255|HAMAP-Rule:MF_01322};; EC=2.7.7.6 {ECO:0000255|HAMAP-Rule:MF_01322};; RNA polymerase subunit beta' {ECO:0000255|HAMAP-Rule:MF_01322}; Transcriptase subunit beta' {ECO:0000255|HAMAP-Rule:MF_01322}; TaxID=395963 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Beijerinckiaceae; Beijerinckia.;" source="Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB; 8712)
DNA-directed RNA polymerase subunit beta'; K03046 DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
DNA-directed RNA polymerase subunit beta' n=1 Tax=Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB 8712) RepID=RPOC_BEII9 rbh
SCNpilot_cont_300_bf_scaffold_1358_curated_21
Methylocystis sp. SC2, Methylocystis, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


20928..21299
DNA (372bp) protein (124aa)
30S ribosomal protein S12 n=1 Tax=Methylosinus trichosporium OB3b RepID=D5QMR3_METTR
rpsL; 30S ribosomal protein S12
30S ribosomal protein S12 {ECO:0000256|HAMAP-Rule:MF_00403, ECO:0000256|RuleBase:RU003623}; TaxID=187303 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylocystaceae; Methylocystis.;" source="Methylocystis sp. (strain SC2).;"
SCNpilot_cont_300_bf_scaffold_1358_curated_22
Methylocella silvestris, Methylocella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


21312..21782
DNA (471bp) protein (157aa)
30S ribosomal protein S7 n=1 Tax=Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906) RepID=RS7_METSB
30S ribosomal protein S7; K02992 small subunit ribosomal protein S7
30S ribosomal protein S7 {ECO:0000255|HAMAP-Rule:MF_00480}; TaxID=395965 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Beijerinckiaceae; Methylocella.;" source="Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906).;"
SCNpilot_cont_300_bf_scaffold_1358_curated_23
bacterium YEK0313, Bacteria

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21815..23887
DNA (2073bp) protein (691aa)
Elongation factor G n=1 Tax=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) RepID=EFG_AZOC5 rbh
Elongation factor G {ECO:0000256|HAMAP-Rule:MF_00054}; Short=EF-G {ECO:0000256|HAMAP-Rule:MF_00054};; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
elongation factor G; K02355 elongation factor G
Displaying 23 items

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