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SCNpilot_cont_500_bf_scaffold_850_curated

Search features with annotation key words

Displaying items 1-30 of 31 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_500_bf_scaffold_850_curated_1
Mesorhizobium sp. LNHC232B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(141..1013)
DNA (873bp) protein (291aa)
Undecaprenyl-diphosphatase {ECO:0000256|HAMAP-Rule:MF_01006}; EC=3.6.1.27 {ECO:0000256|HAMAP-Rule:MF_01006};; Bacitracin resistance protein {ECO:0000256|HAMAP-Rule:MF_01006}; Undecaprenyl pyrophosphate phosphatase {ECO:0000256|HAMAP-Rule:MF_01006}; TaxID=1287243 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC232B00.;"
undecaprenol kinase; K06153 undecaprenyl-diphosphatase [EC:3.6.1.27]
UPI0003CF4688 related cluster n=1 Tax=unknown RepID=UPI0003CF4688
SCNpilot_cont_500_bf_scaffold_850_curated_2
Hyphomicrobium denitrificans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1261..2145
DNA (885bp) protein (295aa)
Transcriptional regulator n=1 Tax=Hyphomicrobium denitrificans 1NES1 RepID=N0BH60_9RHIZ
transcriptional regulator
Transcriptional regulator {ECO:0000313|EMBL:AGK59781.1}; TaxID=670307 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium denitrificans 1NES1.;"
SCNpilot_cont_500_bf_scaffold_850_curated_3
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2212..2949)
DNA (738bp) protein (246aa)
ABC transporter ATP-binding protein n=1 Tax=Rhizobium leguminosarum RepID=UPI0003723779
Histidinol dehydrogenase {ECO:0000313|EMBL:EPR10875.1}; TaxID=1336745 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium radiobacter DSM 30147.;"
livF; putative ABC transporter ATP-binding protein; K01996 branched-chain amino acid transport system ATP-binding protein
SCNpilot_cont_500_bf_scaffold_850_curated_4
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2946..3764)
DNA (819bp) protein (273aa)
amino acid ABC transporter ATP-binding protein n=1 Tax=Rhizobium radiobacter RepID=UPI000378EAA5
Amino acid ABC transporter ATP-binding protein {ECO:0000313|EMBL:EPR10917.1}; TaxID=1336745 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium radiobacter DSM 30147.;"
livG; high affinity branched-chain amino acid ABC transporter ATP-binding protein; K01995 branched-chain amino acid transport system ATP-binding protein
SCNpilot_cont_500_bf_scaffold_850_curated_5
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3761..5065)
DNA (1305bp) protein (435aa)
ABC transporter permease n=1 Tax=Rhizobium radiobacter RepID=UPI00035D0EF1
ABC transporter permease {ECO:0000313|EMBL:EPR10876.1}; TaxID=1336745 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium radiobacter DSM 30147.;"
livM; High-affinity branched-chain amino acid transport system permease protein livM; K01998 branched-chain amino acid transport system permease protein
SCNpilot_cont_500_bf_scaffold_850_curated_6
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5084..6001)
DNA (918bp) protein (306aa)
branched-chain amino acid transporter permease subunit LivH n=1 Tax=Rhizobium leguminosarum RepID=UPI00037F5AE2
Branched-chain amino acid transporter permease subunit LivH {ECO:0000313|EMBL:EPR10877.1}; TaxID=1336745 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium radiobacter DSM 30147.;"
livH; High-affinity branched-chain amino acid transport system permease protein livH; K01997 branched-chain amino acid transport system permease protein
SCNpilot_cont_500_bf_scaffold_850_curated_7
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6074..7189)
DNA (1116bp) protein (372aa)
amino acid ABC transporter substrate-binding protein n=1 Tax=Rhizobium leguminosarum RepID=UPI00036C9955
Amino acid ABC transporter substrate-binding protein {ECO:0000313|EMBL:EPR10878.1}; TaxID=1336745 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium radiobacter DSM 30147.;"
livK; putative branched-chain amino acid ABC transporter; K01999 branched-chain amino acid transport system substrate-binding protein
SCNpilot_cont_500_bf_scaffold_850_curated_8
Sinorhizobium americanum, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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7515..8753
DNA (1239bp) protein (413aa)
aatB1; aspartate aminotransferase B (EC:2.6.1.1)
aspartate aminotransferase n=1 Tax=Rhizobium leguminosarum RepID=UPI00037236B8
Aspartate aminotransferase B {ECO:0000313|EMBL:KEC79122.1}; TaxID=1408224 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium americanum CCGM7.;"
SCNpilot_cont_500_bf_scaffold_850_curated_9
Sinorhizobium fredii, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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8768..9580
DNA (813bp) protein (271aa)
NAD-dependent dehydratase n=1 Tax=Rhizobium sp. (strain BR816) RepID=UPI00035E3B6E
dTDP-glucose 4,6-dehydratase
dTDP-glucose 4,6-dehydratase {ECO:0000313|EMBL:ACP21771.1}; TaxID=394 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Rhizobium sp. (strain NGR234).;"
SCNpilot_cont_500_bf_scaffold_850_curated_10
Sinorhizobium fredii, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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9590..10783
DNA (1194bp) protein (398aa)
Putative FAD dependent oxidoreductase {ECO:0000313|EMBL:CCF00918.1}; EC=1.5.3.1 {ECO:0000313|EMBL:CCF00918.1};; TaxID=1117943 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Rhizobium fredii (strain HH103) (Sinorhizobium fredii).;"
Putative FAD dependent oxidoreductase n=1 Tax=Rhizobium fredii (strain HH103) RepID=G9AIN6_RHIFH
putative FAD dependent oxidoreductase
SCNpilot_cont_500_bf_scaffold_850_curated_11
Sinorhizobium fredii, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10784..11518)
DNA (735bp) protein (245aa)
Putative GntR family transcriptional regulator n=1 Tax=Rhizobium fredii (strain HH103) RepID=G9AIN8_RHIFH
GntR family transcriptional regulator
Putative GntR family transcriptional regulator {ECO:0000313|EMBL:CCF00920.1}; TaxID=1117943 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Rhizobium fredii (strain HH103) (Sinorhizobium fredii).;"
SCNpilot_cont_500_bf_scaffold_850_curated_12
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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11792..12553
DNA (762bp) protein (254aa)
Putative short-chain type dehydrogenase/reductase y4eL {ECO:0000313|EMBL:EYR79260.1}; EC=1.1.1.100 {ECO:0000313|EMBL:EYR79260.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
Putative short-chain type dehydrogenase/reductase y4eL n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EXH7_9RHIZ
putative short-chain type dehydrogenase/reductase y4eL
SCNpilot_cont_500_bf_scaffold_850_curated_13
Sinorhizobium americanum, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12546..13292
DNA (747bp) protein (249aa)
Putative short-chain type dehydrogenase/reductase y4eK n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D0P1_9RHIZ
Short-chain type dehydrogenase/reductase y4eK {ECO:0000313|EMBL:KEC79129.1}; TaxID=1408224 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium americanum CCGM7.;"
putative short-chain type dehydrogenase/reductase y4eK
SCNpilot_cont_500_bf_scaffold_850_curated_14
RHI_Rhodobacterales_62_75, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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13296..14960
DNA (1665bp) protein (555aa)
thiamine pyrophosphate TPP-binding domain-containing protein; K01652 acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
thiamine pyrophosphate protein n=1 Tax=Pseudochrobactrum sp. AO18b RepID=UPI0003B3836F
Tax=RIFCSPHIGHO2_12_FULL_Rhodobacterales_62_75_curated
SCNpilot_cont_500_bf_scaffold_850_curated_15
RHI_Rhodobacterales_62_75, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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14957..17050
DNA (2094bp) protein (698aa)
5-oxoprolinase (EC:3.5.2.9); K01473 N-methylhydantoinase A [EC:3.5.2.14]
5-oxoprolinase (ATP-hydrolyzing) n=1 Tax=Mesorhizobium ciceri bv. biserrulae (strain HAMBI 2942 / LMG 23838 / WSM1271) RepID=E8T7I8_MESCW
Tax=RIFCSPHIGHO2_12_FULL_Rhodobacterales_62_75_curated
SCNpilot_cont_500_bf_scaffold_850_curated_16
RHI_Rhodobacterales_62_75, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17047..18669
DNA (1623bp) protein (541aa)
5-oxoprolinase (EC:3.5.2.9); K01474 N-methylhydantoinase B [EC:3.5.2.14]
5-oxoprolinase n=1 Tax=Rhodobacter sp. CACIA14H1 RepID=V7EL36_9RHOB
Tax=RIFCSPHIGHO2_12_FULL_Rhodobacterales_62_75_curated
SCNpilot_cont_500_bf_scaffold_850_curated_17
Rhizobium freirei, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18744..19184)
DNA (441bp) protein (147aa)
Transcriptional regulator, AsnC family n=1 Tax=Rhizobium freirei PRF 81 RepID=N6V915_9RHIZ
Transcriptional regulator, AsnC family {ECO:0000313|EMBL:ENN89681.1}; TaxID=363754 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium freirei PRF 81.;"
AsnC family transcriptional regulator
SCNpilot_cont_500_bf_scaffold_850_curated_18
Pseudomonas fluorescens, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19323..22370
DNA (3048bp) protein (1016aa)
dgdA2; 2,2-dialkylglycine decarboxylase DgdA (EC:4.1.1.64)
4-aminobutyrate aminotransferase family protein n=1 Tax=Pseudomonas sp. GM33 RepID=J3FRJ4_9PSED
Uncharacterized protein {ECO:0000313|EMBL:KJZ42999.1}; TaxID=294 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas fluorescens.;"
SCNpilot_cont_500_bf_scaffold_850_curated_19
Rhizobium freirei, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22506..23297)
DNA (792bp) protein (264aa)
Putative oxidoreductase NAD protein n=1 Tax=Rhizobium freirei PRF 81 RepID=N6UCT3_9RHIZ
Putative oxidoreductase NAD protein {ECO:0000313|EMBL:ENN87963.1}; TaxID=363754 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium freirei PRF 81.;"
bluB; cob(II)yrinic acid a,c-diamide reductase
SCNpilot_cont_500_bf_scaffold_850_curated_20
Ochrobactrum intermedium, Ochrobactrum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23696..24274)
DNA (579bp) protein (193aa)
PRC-barrel domain-containing protein n=3 Tax=Ochrobactrum RepID=C4WIY0_9RHIZ
PRC-barrel domain-containing protein {ECO:0000313|EMBL:EEQ95781.1}; TaxID=641118 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Ochrobactrum.;" source="Ochrobactrum intermedium LMG 3301.;"
PRC-barrel domain-containing protein
SCNpilot_cont_500_bf_scaffold_850_curated_21
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24868..26106
DNA (1239bp) protein (413aa)
Integrase family protein n=1 Tax=Rhizobium leguminosarum bv. trifolii (strain WSM2304) RepID=B5ZWU8_RHILW
integrase family protein
Integrase family protein {ECO:0000313|EMBL:ACI57404.1}; TaxID=395492 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii (strain WSM2304).;"
SCNpilot_cont_500_bf_scaffold_850_curated_22
unknown

Not on your lists

26103..26768
DNA (666bp) protein (222aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_850_curated_23
Pseudomonas sp. 10-1B, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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26877..27074
DNA (198bp) protein (66aa)
Phage transcriptional regulator AlpA n=1 Tax=Pseudomonas putida ND6 RepID=I3UT15_PSEPU
phage transcriptional regulator AlpA
AlpA family transcriptional regulator {ECO:0000313|EMBL:KIY37745.1}; TaxID=1546029 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. 10-1B.;"
SCNpilot_cont_500_bf_scaffold_850_curated_24
Acidiphilium sp. PM, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27134..29878
DNA (2745bp) protein (915aa)
Putative uncharacterized protein n=1 Tax=Acidiphilium sp. PM RepID=F7S9C0_9PROT
Uncharacterized protein {ECO:0000313|EMBL:EGO94289.1}; TaxID=1043206 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium sp. PM.;"
AAA ATPase
SCNpilot_cont_500_bf_scaffold_850_curated_25
unknown

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30351..30680
DNA (330bp) protein (110aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_850_curated_26
unknown

Not on your lists

comp(30677..31222)
DNA (546bp) protein (182aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_850_curated_27
Polymorphum gilvum, Polymorphum, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(32659..33795)
DNA (1137bp) protein (379aa)
hypothetical protein n=1 Tax=Rhizobium leguminosarum RepID=UPI00037F7A0E
Filamentation induced by cAMP protein Fic
Filamentation induced by cAMP protein Fic {ECO:0000313|EMBL:ADZ68838.1}; TaxID=991905 species="Bacteria; Proteobacteria; Alphaproteobacteria; Polymorphum.;" source="Polymorphum gilvum (strain LMG 25793 / CGMCC 1.9160 / SL003B-26A1).;"
SCNpilot_cont_500_bf_scaffold_850_curated_28
Nitratireductor indicus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

34139..35707
DNA (1569bp) protein (523aa)
N-6 DNA methylase; K03427 type I restriction enzyme M protein [EC:2.1.1.72]
N-6 DNA methylase n=1 Tax=Nitratireductor indicus C115 RepID=K2NK91_9RHIZ
N-6 DNA methylase {ECO:0000313|EMBL:EKF39865.1}; TaxID=1231190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor indicus C115.;"
SCNpilot_cont_500_bf_scaffold_850_curated_29
Microcystis aeruginosa, Microcystis, Chroococcales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

35704..36879
DNA (1176bp) protein (392aa)
type I restriction-modification enzyme S subunit; K01154 type I restriction enzyme, S subunit [EC:3.1.21.3]
Restriction modification system DNA specificity domain n=1 Tax=Microcystis aeruginosa PCC 9432 RepID=I4FGB4_MICAE
Restriction modification system DNA specificity domain {ECO:0000313|EMBL:CCH94689.1}; TaxID=1160280 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Chroococcales; Microcystis.;" source="Microcystis aeruginosa PCC 9432.;"
SCNpilot_cont_500_bf_scaffold_850_curated_30
Rhizobium sp. YS-1r, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

36886..40308
DNA (3423bp) protein (1141aa)
type III restriction protein res subunit; K01153 type I restriction enzyme, R subunit [EC:3.1.21.3]
restriction endonuclease subunit R n=1 Tax=Pseudochrobactrum sp. AO18b RepID=UPI00039D7DE3
Restriction endonuclease subunit R {ECO:0000313|EMBL:KGD95701.1}; TaxID=1532558 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. YS-1r.;"
Displaying items 1-30 of 31 in total

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