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SCNpilot_expt_1000_bf_scaffold_1591_curated

Search features with annotation key words

Displaying 19 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_1591_curated_1
Labrenzia aggregata, Labrenzia, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1..348)
DNA (348bp) protein (116aa)
Stability/partitioning determinant n=1 Tax=Labrenzia aggregata IAM 12614 RepID=A0P4E5_9RHOB
Stability/partitioning determinant {ECO:0000313|EMBL:EAV40096.1}; TaxID=384765 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Labrenzia.;" source="Labrenzia aggregata (strain ATCC 25650 / DSM 13394 / JCM 20685 / NBRC; 16684 / NCIMB 2208 / IAM 12614) (Stappia aggregata).;"
ATPase involved in chromosome partitioning-like protein; K03496 chromosome partitioning protein
SCNpilot_expt_1000_bf_scaffold_1591_curated_2
Sinorhizobium fredii, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(485..715)
DNA (231bp) protein (77aa)
WGR domain protein n=1 Tax=Nitrosococcus watsoni (strain C-113) RepID=D8K9A2_NITWC
Uncharacterized protein {ECO:0000313|EMBL:CEL26591.1}; TaxID=1117943 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Rhizobium fredii (strain HH103) (Sinorhizobium fredii).;"
WGR domain-containing protein
SCNpilot_expt_1000_bf_scaffold_1591_curated_3
Sinorhizobium fredii, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(716..1342)
DNA (627bp) protein (209aa)
Resolvase n=1 Tax=Rhizobium fredii (strain HH103) RepID=G9ABS5_RHIFH
resolvase
Resolvase {ECO:0000313|EMBL:CCE98504.1}; TaxID=1117943 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Rhizobium fredii (strain HH103) (Sinorhizobium fredii).;"
SCNpilot_expt_1000_bf_scaffold_1591_curated_4
Sinorhizobium fredii, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1756..2529
DNA (774bp) protein (258aa)
Uncharacterized protein n=1 Tax=Rhizobium fredii (strain HH103) RepID=G9ABR2_RHIFH
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCE98491.1}; TaxID=1117943 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Rhizobium fredii (strain HH103) (Sinorhizobium fredii).;"
SCNpilot_expt_1000_bf_scaffold_1591_curated_5
Mesorhizobium sp. LSJC285A00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2996..3541
DNA (546bp) protein (182aa)
hypothetical protein n=1 Tax=Rhizobium loti RepID=UPI00036E93F4
Uncharacterized protein {ECO:0000313|EMBL:ESW87211.1}; TaxID=1287338 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSJC285A00.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1591_curated_6
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3567..4139)
DNA (573bp) protein (191aa)
Resolvase n=1 Tax=Agrobacterium tumefaciens str. Cherry 2E-2-2 RepID=M8B7T6_RHIRD
Resolvase {ECO:0000313|EMBL:EMS95505.1}; TaxID=1281779 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium tumefaciens str. Cherry 2E-2-2.;"
resolvase
SCNpilot_expt_1000_bf_scaffold_1591_curated_7
unknown

Not on your lists

4846..5400
DNA (555bp) protein (185aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1591_curated_8
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5845..6135)
DNA (291bp) protein (97aa)
Plasmid stabilization system protein n=1 Tax=Rhizobium leguminosarum bv. viciae WSM1455 RepID=J0JIT3_RHILV
Plasmid stabilization system protein {ECO:0000313|EMBL:EJC63774.1}; TaxID=755176 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. viciae WSM1455.;"
plasmid stabilization system
SCNpilot_expt_1000_bf_scaffold_1591_curated_9
Mesorhizobium sp. L2C084A000, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6128..6343)
DNA (216bp) protein (72aa)
UPI0003D00262 related cluster n=1 Tax=unknown RepID=UPI0003D00262
CopG family transcripitonal regulator {ECO:0000313|EMBL:ESZ29964.1}; TaxID=1287116 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L2C084A000.;"
putative transcriptional regulators containing the CopG/Arc/MetJ DNA-binding domain
SCNpilot_expt_1000_bf_scaffold_1591_curated_10
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6483..6830)
DNA (348bp) protein (116aa)
Putative uncharacterized protein n=1 Tax=Rhodopseudomonas palustris (strain BisB18) RepID=Q215Y2_RHOPB
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABD87804.1}; TaxID=316056 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisB18).;"
SCNpilot_expt_1000_bf_scaffold_1591_curated_11
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6814..7146)
DNA (333bp) protein (111aa)
Putative uncharacterized protein n=1 Tax=Rhodopseudomonas palustris (strain BisB18) RepID=Q215Y3_RHOPB
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABD87803.1}; TaxID=316056 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisB18).;"
SCNpilot_expt_1000_bf_scaffold_1591_curated_12
unknown

Not on your lists

7902..7997
DNA (96bp) protein (32aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1591_curated_13
Sinorhizobium fredii, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8244..9143
DNA (900bp) protein (300aa)
Putative integrase n=1 Tax=Agrobacterium tumefaciens F2 RepID=F7UGY7_RHIRD
Putative integrase {ECO:0000313|EMBL:CEL26563.1}; TaxID=1117943 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Rhizobium fredii (strain HH103) (Sinorhizobium fredii).;"
integrase
SCNpilot_expt_1000_bf_scaffold_1591_curated_14
Sinorhizobium fredii, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9140..9433
DNA (294bp) protein (98aa)
Uncharacterized protein {ECO:0000313|EMBL:CEL26562.1}; TaxID=1117943 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Rhizobium fredii (strain HH103) (Sinorhizobium fredii).;"
SCNpilot_expt_1000_bf_scaffold_1591_curated_15
Sinorhizobium fredii, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9743..11062
DNA (1320bp) protein (440aa)
Uncharacterized protein n=1 Tax=Ruegeria mobilis F1926 RepID=R0FEC4_9RHOB
Uncharacterized protein {ECO:0000313|EMBL:CEL26559.1}; TaxID=1117943 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Rhizobium fredii (strain HH103) (Sinorhizobium fredii).;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1591_curated_16
Sinorhizobium fredii, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11049..11870
DNA (822bp) protein (274aa)
Uncharacterized protein {ECO:0000313|EMBL:CEL26558.1}; TaxID=1117943 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Rhizobium fredii (strain HH103) (Sinorhizobium fredii).;"
SCNpilot_expt_1000_bf_scaffold_1591_curated_17
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12215..13330)
DNA (1116bp) protein (372aa)
Plasmid encoded RepA protein n=1 Tax=Rhodomicrobium vannielii (strain ATCC 17100 / ATH 3.1.1 / DSM 162 / LMG 4299) RepID=E3I760_RHOVT
Plasmid partitioning protein RepA {ECO:0000313|EMBL:EYR79536.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
plasmid encoded RepA protein
SCNpilot_expt_1000_bf_scaffold_1591_curated_18
Labrenzia aggregata, Labrenzia, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13338..13649)
DNA (312bp) protein (104aa)
Uncharacterized protein n=1 Tax=Labrenzia aggregata IAM 12614 RepID=A0P4E6_9RHOB
Uncharacterized protein {ECO:0000313|EMBL:EAV40097.1}; TaxID=384765 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Labrenzia.;" source="Labrenzia aggregata (strain ATCC 25650 / DSM 13394 / JCM 20685 / NBRC; 16684 / NCIMB 2208 / IAM 12614) (Stappia aggregata).;"
SCNpilot_expt_1000_bf_scaffold_1591_curated_19
Labrenzia aggregata, Labrenzia, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13646..14050)
DNA (405bp) protein (135aa)
Stability/partitioning determinant n=1 Tax=Labrenzia aggregata IAM 12614 RepID=A0P4E5_9RHOB
Stability/partitioning determinant {ECO:0000313|EMBL:EAV40096.1}; TaxID=384765 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Labrenzia.;" source="Labrenzia aggregata (strain ATCC 25650 / DSM 13394 / JCM 20685 / NBRC; 16684 / NCIMB 2208 / IAM 12614) (Stappia aggregata).;"
parA; ParA protein, putative plasmid partitioning protein; K03496 chromosome partitioning protein
Displaying 19 items

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