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SCNpilot_expt_1000_bf_scaffold_2245_curated

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Displaying 20 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_2245_curated_1
Rhizobium freirei, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(218..805)
DNA (588bp) protein (196aa)
Major facilitator superfamily MFS 1 n=1 Tax=Rhizobium freirei PRF 81 RepID=N6UHG9_9RHIZ
Major facilitator superfamily MFS 1 {ECO:0000313|EMBL:ENN89698.1}; TaxID=363754 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium freirei PRF 81.;"
major facilitator superfamily protein; K08167 MFS transporter, DHA2 family, methyl viologen resistance protein SmvA
SCNpilot_expt_1000_bf_scaffold_2245_curated_2
Rhizobium freirei, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(845..1705)
DNA (861bp) protein (287aa)
Major facilitator superfamily MFS 1 n=1 Tax=Rhizobium freirei PRF 81 RepID=N6UHG9_9RHIZ
Major facilitator superfamily MFS 1 {ECO:0000313|EMBL:ENN89698.1}; TaxID=363754 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium freirei PRF 81.;"
major facilitator superfamily protein; K08167 MFS transporter, DHA2 family, methyl viologen resistance protein SmvA
SCNpilot_expt_1000_bf_scaffold_2245_curated_3
unknown

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comp(1861..1971)
DNA (111bp) protein (37aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_2245_curated_4
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2339..3034
DNA (696bp) protein (232aa)
Two-component transcriptional regulator n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LVC0_RHITR
two-component transcriptional regulator
Two-component transcriptional regulator {ECO:0000313|EMBL:AGB74089.1}; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
SCNpilot_expt_1000_bf_scaffold_2245_curated_5
Rhizobium freirei, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2973..4073
DNA (1101bp) protein (367aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=363754 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium freirei PRF 81.;"
Integral membrane sensor signal transduction histidine kinase n=1 Tax=Rhizobium freirei PRF 81 RepID=N6VF31_9RHIZ
integral membrane sensor signal transduction histidine kinase
SCNpilot_expt_1000_bf_scaffold_2245_curated_6
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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4244..5056
DNA (813bp) protein (271aa)
Transcriptional regulator of sugar metabolism n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CRF0_9RHIZ
Transcriptional regulator of sugar metabolism {ECO:0000313|EMBL:EYR78656.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
deoR family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_2245_curated_7
Mesorhizobium sp. STM 4661, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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5079..5579
DNA (501bp) protein (167aa)
GCN5-related N-acetyltransferase n=1 Tax=Mesorhizobium sp. STM 4661 RepID=M5FAC4_9RHIZ
GCN5-related N-acetyltransferase {ECO:0000313|EMBL:CCV13380.1}; TaxID=1297570 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. STM 4661.;"
N-acetyltransferase GCN5
SCNpilot_expt_1000_bf_scaffold_2245_curated_8
Rhizobium freirei, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5638..5874)
DNA (237bp) protein (79aa)
Uncharacterized protein n=1 Tax=Rhizobium freirei PRF 81 RepID=N6TWW0_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:ENN84914.1}; TaxID=363754 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium freirei PRF 81.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2245_curated_9
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5941..6840)
DNA (900bp) protein (300aa)
Transcriptional regulator protein n=1 Tax=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) RepID=B9JLB4_AGRRK
transcriptional regulator protein
Transcriptional regulator protein {ECO:0000313|EMBL:ACM28613.1}; TaxID=311403 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium radiobacter (strain K84 / ATCC BAA-868).;"
SCNpilot_expt_1000_bf_scaffold_2245_curated_10
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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6976..8271
DNA (1296bp) protein (432aa)
Glycine/D-amino acid oxidase, deaminating n=1 Tax=Rhizobium leguminosarum bv. viciae WSM1455 RepID=J0JVR8_RHILV
Glycine/D-amino acid oxidase, deaminating {ECO:0000313|EMBL:EJC68574.1}; TaxID=755176 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. viciae WSM1455.;"
FAD dependent oxidoreductase
SCNpilot_expt_1000_bf_scaffold_2245_curated_11
Rhizobium sp. CF122, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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8319..9857
DNA (1539bp) protein (513aa)
pcd; piperideine-6-carboxylate dehydrogenase; K00128 aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
NAD-dependent aldehyde dehydrogenase n=1 Tax=Rhizobium sp. CF122 RepID=J2IYU8_9RHIZ
NAD-dependent aldehyde dehydrogenase {ECO:0000313|EMBL:EJL53958.1}; TaxID=1144312 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF122.;"
SCNpilot_expt_1000_bf_scaffold_2245_curated_12
Ruminococcus sp. CAG:60, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(9941..10324)
DNA (384bp) protein (128aa)
Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily. (EC:4.4.1.5)
Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily n=1 Tax=Ruminococcus sp. CAG:60 RepID=R5HV10_9FIRM
Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily {ECO:0000313|EMBL:CCY33530.1}; TaxID=1262964 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:60.;"
SCNpilot_expt_1000_bf_scaffold_2245_curated_13
Burkholderia ambifaria, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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11641..11919
DNA (279bp) protein (93aa)
Uncharacterized protein n=1 Tax=Burkholderia ambifaria MEX-5 RepID=B1TED9_9BURK
Uncharacterized protein {ECO:0000313|EMBL:EDT38062.1}; TaxID=396597 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; Burkholderia cepacia complex.;" source="Burkholderia ambifaria MEX-5.;"
SCNpilot_expt_1000_bf_scaffold_2245_curated_14
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12221..13081)
DNA (861bp) protein (287aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CWM5_9RHIZ
ABC-type dipeptide/oligopeptide/nickel transport system permease component {ECO:0000313|EMBL:EYR84428.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
peptide ABC transporter; K02034 peptide/nickel transport system permease protein
SCNpilot_expt_1000_bf_scaffold_2245_curated_15
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13078..14028)
DNA (951bp) protein (317aa)
Dipeptide transport system permease protein DppB n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CRX1_9RHIZ
ABC-type dipeptide/oligopeptide/nickel transport system permease component {ECO:0000313|EMBL:EYR84429.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
putative substrate-binding component of ABC transporter; K02033 peptide/nickel transport system permease protein
SCNpilot_expt_1000_bf_scaffold_2245_curated_16
Rhizobium freirei, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14040..14396)
DNA (357bp) protein (119aa)
Putative ABC transporter protein n=1 Tax=Rhizobium freirei PRF 81 RepID=N6UW54_9RHIZ
Putative ABC transporter protein {ECO:0000313|EMBL:ENN84981.1}; TaxID=363754 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium freirei PRF 81.;"
ABC transporter substrate binding protein (dipeptide); K02035 peptide/nickel transport system substrate-binding protein
SCNpilot_expt_1000_bf_scaffold_2245_curated_17
Rhizobium freirei, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14369..15532)
DNA (1164bp) protein (388aa)
Putative ABC transporter protein n=1 Tax=Rhizobium freirei PRF 81 RepID=N6UW54_9RHIZ
Putative ABC transporter protein {ECO:0000313|EMBL:ENN84981.1}; TaxID=363754 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium freirei PRF 81.;"
ABC transporter substrate binding protein (dipeptide); K02035 peptide/nickel transport system substrate-binding protein
SCNpilot_expt_1000_bf_scaffold_2245_curated_18
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15619..17100)
DNA (1482bp) protein (494aa)
hypothetical protein n=1 Tax=Hoeflea sp. 108 RepID=UPI0003754E12
Microcystinase C {ECO:0000256|PIRNR:PIRNR012702}; Short=MlrC {ECO:0000256|PIRNR:PIRNR012702};; TaxID=1315272 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium tumefaciens GW4.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2245_curated_19
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17820..18683
DNA (864bp) protein (288aa)
hypothetical protein n=1 Tax=Hoeflea sp. 108 RepID=UPI00037C03BB
Transcriptional regulator RpiR family {ECO:0000313|EMBL:EYR81708.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
RpiR family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_2245_curated_20
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(18703..19521)
DNA (819bp) protein (273aa)
PREDICTED: ornithine aminotransferase, mitochondrial-like n=1 Tax=Pantholops hodgsonii RepID=UPI0003C1514D
Aminotransferase like protein {ECO:0000313|EMBL:AHK47617.1}; TaxID=1416753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens OV14.;"
4-aminobutyrate aminotransferase family protein
Displaying 20 items

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