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SCNpilot_expt_1000_bf_scaffold_2629_curated

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Displaying 24 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_2629_curated_1
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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37..909
DNA (873bp) protein (291aa)
ribosomal protein P2 n=1 Tax=Rhizobium meliloti RepID=UPI00035F1888
Cytochrome c1 {ECO:0000313|EMBL:AHK44504.1}; TaxID=1416753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens OV14.;"
fbcH; cytochrome b/c1
SCNpilot_expt_1000_bf_scaffold_2629_curated_2
Rhizobium sp. PDO1-076, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1080..1622
DNA (543bp) protein (181aa)
apt; adenine phosphoribosyltransferase (EC:2.4.2.7); K00759 adenine phosphoribosyltransferase [EC:2.4.2.7]
Adenine phosphoribosyltransferase {ECO:0000256|HAMAP-Rule:MF_00004, ECO:0000256|SAAS:SAAS00084274}; Short=APRT {ECO:0000256|HAMAP-Rule:MF_00004};; EC=2.4.2.7 {ECO:0000256|HAMAP-Rule:MF_00004, ECO:0000256|SAAS:SAAS00084255};; TaxID=1125979 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. PDO1-076.;"
Adenine phosphoribosyltransferase n=1 Tax=Agrobacterium albertimagni AOL15 RepID=K2QX99_9RHIZ
SCNpilot_expt_1000_bf_scaffold_2629_curated_3
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1635..2099)
DNA (465bp) protein (155aa)
hypothetical protein n=1 Tax=Rhizobium giardinii RepID=UPI00037092B3
Strain MEJ076 contig_9, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ02774.1}; TaxID=358 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Rhizobium radiobacter (Agrobacterium tumefaciens) (Agrobacterium; radiobacter).;"
enoyl-CoA hydratase
SCNpilot_expt_1000_bf_scaffold_2629_curated_4
Rhizobium sp. CF142, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2096..2566)
DNA (471bp) protein (157aa)
Acyl dehydratase n=1 Tax=Rhizobium sp. CF142 RepID=J1T2T6_9RHIZ
enoyl-CoA hydratase
Acyl dehydratase {ECO:0000313|EMBL:EJJ25936.1}; TaxID=1144314 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF142.;"
SCNpilot_expt_1000_bf_scaffold_2629_curated_5
Neorhizobium galegae, Neorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2604..3896
DNA (1293bp) protein (431aa)
Uncharacterized protein n=1 Tax=Rhizobium sp. CF142 RepID=J2ARK0_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:CDN54859.1}; TaxID=399 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Neorhizobium.;" source="Rhizobium galegae.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2629_curated_6
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3934..5037)
DNA (1104bp) protein (368aa)
Ribosome-binding ATPase YchF n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CF74_9RHIZ
Ribosome-binding ATPase YchF {ECO:0000256|HAMAP-Rule:MF_00944}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
GTP-dependent nucleic acid-binding protein engD; K06942
SCNpilot_expt_1000_bf_scaffold_2629_curated_7
Rhizobium nepotum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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5190..5501
DNA (312bp) protein (104aa)
ATP-dependent Clp protease adaptor protein clpS 2 n=2 Tax=Rhizobium RepID=U4PZC2_9RHIZ
ATP-dependent Clp protease adaptor protein clpS 2
ATP-dependent Clp protease adapter protein ClpS {ECO:0000256|HAMAP-Rule:MF_00302}; TaxID=1368418 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium nepotum 39/7.;"
SCNpilot_expt_1000_bf_scaffold_2629_curated_8
Rhizobium etli, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5505..6230)
DNA (726bp) protein (242aa)
pth; peptidyl-tRNA hydrolase (EC:3.1.1.29)
Peptidyl-tRNA hydrolase {ECO:0000256|HAMAP-Rule:MF_00083, ECO:0000256|RuleBase:RU000673}; Short=PTH {ECO:0000256|HAMAP-Rule:MF_00083};; EC=3.1.1.29 {ECO:0000256|HAMAP-Rule:MF_00083, ECO:0000256|RuleBase:RU000673};; TaxID=1328306 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium etli bv. mimosae str. Mim1.;"
Peptidyl-tRNA hydrolase n=1 Tax=Rhizobium etli bv. mimosae str. Mim1 RepID=S5SL75_RHIET
SCNpilot_expt_1000_bf_scaffold_2629_curated_9
Rhizobium sp. PDO1-076, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(6365..6958)
DNA (594bp) protein (198aa)
50S ribosomal protein L25 n=1 Tax=Rhizobium sp. PDO1-076 RepID=H4FDT8_9RHIZ
50S ribosomal protein L25 {ECO:0000256|HAMAP-Rule:MF_01334, ECO:0000256|SAAS:SAAS00023358}; General stress protein CTC {ECO:0000256|HAMAP-Rule:MF_01334, ECO:0000256|SAAS:SAAS00023360}; TaxID=1125979 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. PDO1-076.;"
rplY; 50S ribosomal protein L25; K02897 large subunit ribosomal protein L25
SCNpilot_expt_1000_bf_scaffold_2629_curated_10
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7232..8809
DNA (1578bp) protein (526aa)
hypothetical protein n=1 Tax=Rhizobium leguminosarum RepID=UPI0003675EBE
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACS57284.1}; Flags: Precursor;; TaxID=395491 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii (strain WSM1325).;"
SCNpilot_expt_1000_bf_scaffold_2629_curated_11
Sinorhizobium americanum, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(8975..9655)
DNA (681bp) protein (227aa)
Ribose-phosphate pyrophosphokinase {ECO:0000256|HAMAP-Rule:MF_00583}; Short=RPPK {ECO:0000256|HAMAP-Rule:MF_00583};; EC=2.7.6.1 {ECO:0000256|HAMAP-Rule:MF_00583};; 5-phospho-D-ribosyl alpha-1-diphosphate {ECO:0000256|HAMAP-Rule:MF_00583}; Phosphoribosyl diphosphate synthase {ECO:0000256|HAMAP-Rule:MF_00583}; Phosphoribosyl pyrophosphate synthase {ECO:0000256|HAMAP-Rule:MF_00583}; TaxID=1408224 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sin
prsA; ribose-phosphate pyrophosphokinase; K00948 ribose-phosphate pyrophosphokinase [EC:2.7.6.1]
Ribose-phosphate pyrophosphokinase n=1 Tax=Rhizobium fredii (strain HH103) RepID=G9A8S9_RHIFH
SCNpilot_expt_1000_bf_scaffold_2629_curated_12
Rhizobium sp. YS-1r, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10010..10720)
DNA (711bp) protein (237aa)
Uncharacterized protein n=1 Tax=Agrobacterium albertimagni AOL15 RepID=K2Q4A9_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:KGE01083.1}; TaxID=1532558 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. YS-1r.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2629_curated_13
Rhizobium sp. CF122, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(10841..11992)
DNA (1152bp) protein (384aa)
Xaa-Pro dipeptidase; K01271 Xaa-Pro dipeptidase [EC:3.4.13.9]
Xaa-Pro aminopeptidase n=1 Tax=Rhizobium sp. CF122 RepID=J3BSI6_9RHIZ
Xaa-Pro aminopeptidase {ECO:0000313|EMBL:EJL57281.1}; TaxID=1144312 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF122.;"
SCNpilot_expt_1000_bf_scaffold_2629_curated_14
Rhizobium sp. YS-1r, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11994..12335)
DNA (342bp) protein (114aa)
Uncharacterized protein n=1 Tax=Sinorhizobium medicae (strain WSM419) RepID=A6UBQ6_SINMW
Laccase domain protein {ECO:0000256|RuleBase:RU361274}; TaxID=1532558 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. YS-1r.;"
hypothetical protein; K05810 conserved hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2629_curated_15
Rhizobium etli, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(12916..14022)
DNA (1107bp) protein (369aa)
Putative uncharacterized protein n=1 Tax=Rhizobium etli CNPAF512 RepID=F2AIZ1_RHIET
Uncharacterized protein {ECO:0000313|EMBL:EGE55583.1}; TaxID=993047 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium etli CNPAF512.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2629_curated_16
Sinorhizobium meliloti, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14481..15026)
DNA (546bp) protein (182aa)
Uncharacterized protein n=5 Tax=Rhizobium meliloti RepID=F7X1D9_SINMM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEH78115.1}; TaxID=707241 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium meliloti (strain SM11).;"
SCNpilot_expt_1000_bf_scaffold_2629_curated_17
Rhizobium freirei, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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15098..15358
DNA (261bp) protein (87aa)
Uncharacterized protein n=1 Tax=Rhizobium freirei PRF 81 RepID=N6UCN1_9RHIZ
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ENN87908.1}; TaxID=363754 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium freirei PRF 81.;"
SCNpilot_expt_1000_bf_scaffold_2629_curated_18
Rhizobium sp. YS-1r, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15741..16241
DNA (501bp) protein (167aa)
Uncharacterized protein n=2 Tax=Rhizobium radiobacter RepID=F7U7U6_RHIRD
Uncharacterized protein {ECO:0000313|EMBL:KGE01076.1}; TaxID=1532558 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. YS-1r.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2629_curated_19
Rhizobium sp. CF142, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16244..17065
DNA (822bp) protein (274aa)
Pyrroline-5-carboxylate reductase {ECO:0000256|HAMAP-Rule:MF_01925}; Short=P5C reductase {ECO:0000256|HAMAP-Rule:MF_01925};; Short=P5CR {ECO:0000256|HAMAP-Rule:MF_01925};; EC=1.5.1.2 {ECO:0000256|HAMAP-Rule:MF_01925};; PCA reductase {ECO:0000256|HAMAP-Rule:MF_01925}; TaxID=1144314 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF142.;"
pyrroline-5-carboxylate reductase; K00286 pyrroline-5-carboxylate reductase [EC:1.5.1.2]
Pyrroline-5-carboxylate reductase n=1 Tax=Rhizobium sp. CF142 RepID=J2KXI7_9RHIZ
SCNpilot_expt_1000_bf_scaffold_2629_curated_20
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17089..17430
DNA (342bp) protein (114aa)
tRNA-binding protein n=1 Tax=Rhizobium leguminosarum RepID=UPI00036CC9C7
export-like chaperone CsaA; K06878 tRNA-binding protein
Export-related chaperone CsaA {ECO:0000313|EMBL:ACI56024.1}; TaxID=395492 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii (strain WSM2304).;"
SCNpilot_expt_1000_bf_scaffold_2629_curated_21
Neorhizobium galegae, Neorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17447..18028)
DNA (582bp) protein (194aa)
Uncharacterized protein n=1 Tax=Rhizobium sp. CF080 RepID=J2JI14_9RHIZ
PF07081 family protein {ECO:0000313|EMBL:CDN54833.1}; TaxID=399 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Neorhizobium.;" source="Rhizobium galegae.;"
hypothetical protein; K09702 hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2629_curated_22
Sinorhizobium medicae, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18214..19338)
DNA (1125bp) protein (375aa)
Uncharacterized protein n=1 Tax=Sinorhizobium medicae (strain WSM419) RepID=A6UFP9_SINMW
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABR62479.1}; TaxID=366394 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium medicae (strain WSM419) (Ensifer medicae).;"
SCNpilot_expt_1000_bf_scaffold_2629_curated_23
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19475..20269
DNA (795bp) protein (265aa)
Trehalose 6-phosphate phosphatase {ECO:0000256|RuleBase:RU361117}; EC=3.1.3.12 {ECO:0000256|RuleBase:RU361117};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
HAD-superfamily hydrolase, subfamily IIB (EC:3.1.3.12); K01087 trehalose 6-phosphate phosphatase [EC:3.1.3.12]
Putative trehalose-phosphate phosphatase OtsB n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EP05_9RHIZ
SCNpilot_expt_1000_bf_scaffold_2629_curated_24
Rhizobium etli, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20701..21891)
DNA (1191bp) protein (397aa)
two-component sensor histidine kinase (EC:2.7.13.3); K07638 two-component system, OmpR family, osmolarity sensor histidine kinase EnvZ [EC:2.7.13.3]
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=491916 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium etli (strain CIAT 652).;"
Probable two-component sensor histidine kinase protein n=1 Tax=Rhizobium etli (strain CIAT 652) RepID=B3PUY9_RHIE6
Displaying 24 items

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