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SCNpilot_expt_1000_bf_scaffold_5561_curated

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Displaying 14 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_5561_curated_1
Sphingobium quisquiliarum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1..954)
DNA (954bp) protein (318aa)
Conjugal transfer protein TraG n=1 Tax=Sphingobium quisquiliarum P25 RepID=T0HPV4_9SPHN
Conjugal transfer protein TraG {ECO:0000313|EMBL:EQA99588.1}; TaxID=1329909 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium quisquiliarum P25.;"
conjugal transfer coupling protein TraG; K03205 type IV secretion system protein VirD4
SCNpilot_expt_1000_bf_scaffold_5561_curated_2
Sphingobium quisquiliarum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(984..2723)
DNA (1740bp) protein (580aa)
Type VI secretion protein n=1 Tax=Sphingobium quisquiliarum P25 RepID=T0HJR0_9SPHN
Type VI secretion protein {ECO:0000313|EMBL:EQA99589.1}; TaxID=1329909 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium quisquiliarum P25.;"
virD2; type IV secretory pathway VirD2 component
SCNpilot_expt_1000_bf_scaffold_5561_curated_3
Sphingobium quisquiliarum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2967..3683)
DNA (717bp) protein (239aa)
Uncharacterized protein n=1 Tax=Sphingobium quisquiliarum P25 RepID=T0G737_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EQA99590.1}; TaxID=1329909 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium quisquiliarum P25.;"
lytic transglycosylase
SCNpilot_expt_1000_bf_scaffold_5561_curated_4
Xanthobacter autotrophicus, Xanthobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3688..4035)
DNA (348bp) protein (116aa)
Uncharacterized protein n=1 Tax=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) RepID=A7IJP7_XANP2
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABS68240.1}; TaxID=78245 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Xanthobacter.;" source="Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2).;"
SCNpilot_expt_1000_bf_scaffold_5561_curated_5
Sphingobium quisquiliarum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4081..4626)
DNA (546bp) protein (182aa)
Peptidase S26 n=1 Tax=Sphingobium quisquiliarum P25 RepID=T0GHT2_9SPHN
Peptidase S26 {ECO:0000313|EMBL:EQA99592.1}; TaxID=1329909 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium quisquiliarum P25.;"
conjugal transfer protein
SCNpilot_expt_1000_bf_scaffold_5561_curated_6
Sphingobium quisquiliarum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4623..5144)
DNA (522bp) protein (174aa)
Uncharacterized protein n=1 Tax=Sphingobium quisquiliarum P25 RepID=T0HPW0_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EQA99593.1}; TaxID=1329909 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium quisquiliarum P25.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_5561_curated_7
Sphingobium quisquiliarum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5141..6007)
DNA (867bp) protein (289aa)
ParA n=1 Tax=Sphingobium quisquiliarum P25 RepID=T0HPU5_9SPHN
ParA {ECO:0000313|EMBL:EQA99578.1}; TaxID=1329909 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium quisquiliarum P25.;"
ParA-like protein; K03496 chromosome partitioning protein
SCNpilot_expt_1000_bf_scaffold_5561_curated_8
Sphingobium quisquiliarum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6226..7092)
DNA (867bp) protein (289aa)
RepA replication protein n=1 Tax=Sphingobium quisquiliarum P25 RepID=T0G742_9SPHN
RepA replication protein {ECO:0000313|EMBL:EQA99595.1}; TaxID=1329909 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium quisquiliarum P25.;"
putative plasmid replication protein A
SCNpilot_expt_1000_bf_scaffold_5561_curated_9
Sphingobium quisquiliarum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7103..7384)
DNA (282bp) protein (94aa)
Transcriptional regulator n=1 Tax=Sphingobium quisquiliarum P25 RepID=T0GG03_9SPHN
Transcriptional regulator {ECO:0000313|EMBL:EQA99596.1}; TaxID=1329909 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium quisquiliarum P25.;"
transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_5561_curated_10
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(7525..7758)
DNA (234bp) protein (78aa)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI00030D3936
Uncharacterized protein {ECO:0000313|EMBL:CDN95824.1}; TaxID=358 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Rhizobium radiobacter (Agrobacterium tumefaciens) (Agrobacterium; radiobacter).;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_5561_curated_11
Mesorhizobium sp. LNHC252B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8075..8299)
DNA (225bp) protein (75aa)
UPI0003CE8209 related cluster n=1 Tax=unknown RepID=UPI0003CE8209
Uncharacterized protein {ECO:0000313|EMBL:ESY71780.1}; TaxID=1287252 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC252B00.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_5561_curated_12
Sphingobium quisquiliarum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8419..8685)
DNA (267bp) protein (89aa)
Uncharacterized protein n=1 Tax=Sphingobium quisquiliarum P25 RepID=T0HJS1_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EQA99599.1}; TaxID=1329909 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium quisquiliarum P25.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_5561_curated_13
Afipia sp. P52-10, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8821..9075)
DNA (255bp) protein (85aa)
XRE family transcriptional regulator n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0003767DE9
XRE family transcriptional regulator {ECO:0000313|EMBL:ETR77849.1}; TaxID=1429916 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. P52-10.;"
XRE family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_5561_curated_14
Sphingobium quisquiliarum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9265..9549)
DNA (285bp) protein (95aa)
Uncharacterized protein n=1 Tax=Sphingobium quisquiliarum P25 RepID=T0GG09_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EQA99601.1}; TaxID=1329909 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium quisquiliarum P25.;"
hypothetical protein
Displaying 14 items

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