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SCNpilot_expt_1000_bf_scaffold_4477_curated

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Displaying 15 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_4477_curated_1
Sinorhizobium americanum, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3..290)
DNA (288bp) protein (96aa)
sn-glycerol-3-phosphate transport system permease protein ugpE n=1 Tax=Rhizobium fredii (strain HH103) RepID=G9A692_RHIFH
sn-glycerol-3-phosphate transport system permease protein ugpE {ECO:0000313|EMBL:KEC81953.1}; TaxID=1408224 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium americanum CCGM7.;"
ugpE; sn-glycerol-3-phosphate transport system permease protein ugpE; K05815 sn-glycerol 3-phosphate transport system permease protein
SCNpilot_expt_1000_bf_scaffold_4477_curated_2
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(298..1179)
DNA (882bp) protein (294aa)
sn-glycerol-3-phosphate ABC transporter membrane protein n=1 Tax=Agrobacterium tumefaciens CCNWGS0286 RepID=G6XQU8_RHIRD
Glycerol-3-phosphate transporter permease {ECO:0000313|EMBL:EPR21493.1}; TaxID=1336745 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium radiobacter DSM 30147.;"
Putative sugar ABC transporter (permease protein); putative glycerol 3-phosphate transport protein, ugpA-like protein
SCNpilot_expt_1000_bf_scaffold_4477_curated_3
Sinorhizobium fredii, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1261..2562)
DNA (1302bp) protein (434aa)
sn-glycerol-3-phosphate-binding periplasmic protein UgpB n=1 Tax=Sinorhizobium fredii USDA 257 RepID=I3XFM7_RHIFR
ugpB2; sn-glycerol 3-phosphate ABC transporter substrate-binding protein
sn-glycerol-3-phosphate-binding periplasmic protein UgpB {ECO:0000313|EMBL:AFL54683.1}; TaxID=1185652 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium fredii USDA 257.;"
SCNpilot_expt_1000_bf_scaffold_4477_curated_4
Rhizobium sp. Pop5, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2923..3252)
DNA (330bp) protein (110aa)
hypothetical protein n=1 Tax=Rhizobium giardinii RepID=UPI0003659598
Uncharacterized protein {ECO:0000313|EMBL:EJZ21227.1}; TaxID=1223565 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. Pop5.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_4477_curated_5
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3432..3872
DNA (441bp) protein (147aa)
hypothetical protein n=1 Tax=Rhizobium leguminosarum RepID=UPI0003704E26
Uncharacterized protein {ECO:0000313|EMBL:AHF87173.1}; TaxID=754523 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii WSM1689.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_4477_curated_6
Neorhizobium galegae, Neorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3916..4548)
DNA (633bp) protein (211aa)
phage SPO1 DNA polymerase-like protein; K02334 DNA polymerase bacteriophage-type [EC:2.7.7.7]
Phage SPO1 DNA polymerase-related protein n=1 Tax=Rhizobium sp. RepID=L0NIC0_RHISP
Phage SPO1 DNA polymerase-related protein {ECO:0000313|EMBL:CDN55556.1}; TaxID=399 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Neorhizobium.;" source="Rhizobium galegae.;"
SCNpilot_expt_1000_bf_scaffold_4477_curated_7
Rhizobium sp. R1-200B4, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4565..4828)
DNA (264bp) protein (88aa)
Uncharacterized protein n=1 Tax=Agrobacterium albertimagni AOL15 RepID=K2QFJ5_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:KEQ07424.1}; TaxID=1509405 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. R1-200B4.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_4477_curated_8
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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5403..6020
DNA (618bp) protein (206aa)
TerC family transporter n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D2U5_9RHIZ
TerC family transporter {ECO:0000313|EMBL:EYR77838.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
transporter protein, TerC family
SCNpilot_expt_1000_bf_scaffold_4477_curated_9
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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6131..6982
DNA (852bp) protein (284aa)
D-alanine aminotransferase Dat {ECO:0000313|EMBL:EYR79242.1}; EC=2.6.1.21 {ECO:0000313|EMBL:EYR79242.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
Branched-chain amino acid aminotransferase (EC:2.6.1.21)
D-alanine aminotransferase Dat n=1 Tax=Shinella zoogloeoides DD12 RepID=V5ENT6_9RHIZ
SCNpilot_expt_1000_bf_scaffold_4477_curated_10
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7011..8042
DNA (1032bp) protein (344aa)
D-aminopeptidase {ECO:0000313|EMBL:EYR79241.1}; EC=3.4.11.19 {ECO:0000313|EMBL:EYR79241.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
D-aminopeptidase (EC:3.4.11.19)
D-aminopeptidase n=2 Tax=Rhizobium meliloti RepID=M4MI15_RHIML
SCNpilot_expt_1000_bf_scaffold_4477_curated_11
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8039..8839
DNA (801bp) protein (267aa)
D-aminopeptidase DppA {ECO:0000313|EMBL:EYR79240.1}; EC=3.4.11.- {ECO:0000313|EMBL:EYR79240.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
D-aminopeptidase (EC:3.4.11.-)
D-aminopeptidase DppA n=1 Tax=Shinella zoogloeoides DD12 RepID=V5ELM8_9RHIZ
SCNpilot_expt_1000_bf_scaffold_4477_curated_12
Sinorhizobium meliloti, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8840..9781)
DNA (942bp) protein (314aa)
LysR family transcriptional regulator n=1 Tax=Rhizobium sp. 42MFCr.1 RepID=UPI00036220A4
LysR family transcriptional regulator
Transcriptional regulator, LysR family {ECO:0000313|EMBL:AAK64707.1}; TaxID=266834 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Rhizobium meliloti (strain 1021) (Ensifer meliloti) (Sinorhizobium; meliloti).;"
SCNpilot_expt_1000_bf_scaffold_4477_curated_13
unknown

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comp(9830..10618)
DNA (789bp) protein (263aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_4477_curated_14
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10943..11590
DNA (648bp) protein (216aa)
Amidohydrolase 3 n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D4N2_9RHIZ
Amidohydrolase 3 {ECO:0000313|EMBL:EYR83104.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
amidohydrolase 3; K07047
SCNpilot_expt_1000_bf_scaffold_4477_curated_15
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11873..12235
DNA (363bp) protein (121aa)
Heme-binding protein A n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CVQ8_9RHIZ
Heme-binding protein A {ECO:0000313|EMBL:EYR83103.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
ABC transporter periplasmic protein
Displaying 15 items

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