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SCNpilot_expt_1000_bf_scaffold_716_curated

Search features with annotation key words

Displaying items 1-30 of 133 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_716_curated_1
Rhizobium sp., Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3..341
DNA (339bp) protein (113aa)
Holliday junction ATP-dependent DNA helicase RuvA {ECO:0000256|HAMAP-Rule:MF_00031, ECO:0000256|SAAS:SAAS00058935}; EC=3.6.4.12 {ECO:0000256|HAMAP-Rule:MF_00031, ECO:0000256|SAAS:SAAS00058896};; TaxID=391 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp.;"
ruvA; Holliday junction DNA helicase motor protein; K03550 holliday junction DNA helicase RuvA [EC:3.6.4.12]
Holliday junction ATP-dependent DNA helicase RuvA n=1 Tax=Rhizobium sp. RepID=L0NH35_RHISP
SCNpilot_expt_1000_bf_scaffold_716_curated_2
Rhizobium freirei, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(553..912)
DNA (360bp) protein (120aa)
Uncharacterized protein n=1 Tax=Rhizobium freirei PRF 81 RepID=N6V2J9_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:ENN87306.1}; TaxID=363754 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium freirei PRF 81.;"
SCNpilot_expt_1000_bf_scaffold_716_curated_3
Rhizobium gallicum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1475..1612
DNA (138bp) protein (46aa)
Holliday junction ATP-dependent DNA helicase RuvB {ECO:0000256|HAMAP-Rule:MF_00016}; EC=3.6.4.12 {ECO:0000256|HAMAP-Rule:MF_00016};; TaxID=1418105 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium gallicum bv. gallicum R602.;"
ruvB; holliday junction DNA helicase RuvB (EC:3.6.4.12)
Holliday junction DNA helicase RuvB n=1 Tax=Rhizobium sp. 2MFCol3.1 RepID=UPI0003605D9A
SCNpilot_expt_1000_bf_scaffold_716_curated_4
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1617..2120
DNA (504bp) protein (168aa)
ADP-ribose pyrophosphatase n=1 Tax=Rhizobium leguminosarum bv. trifolii WSM597 RepID=J0H6E9_RHILT
ADP-ribose pyrophosphatase {ECO:0000313|EMBL:EJB05638.1}; TaxID=754764 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii WSM597.;"
NUDIX hydrolase
SCNpilot_expt_1000_bf_scaffold_716_curated_5
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2188..2640
DNA (453bp) protein (151aa)
4-hydroxybenzoyl-CoA thioesterase; K07107 acyl-CoA thioester hydrolase [EC:3.1.2.-]
4-hydroxybenzoyl-CoA thioesterase n=1 Tax=Rhizobium leguminosarum RepID=UPI00035D0E5D
Tol-pal system-associated acyl-CoA thioesterase {ECO:0000313|EMBL:EJB05656.1}; TaxID=754764 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii WSM597.;"
SCNpilot_expt_1000_bf_scaffold_716_curated_6
Agrobacterium vitis, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3030..3749
DNA (720bp) protein (240aa)
Protein TolQ n=1 Tax=Agrobacterium vitis (strain S4 / ATCC BAA-846) RepID=B9JRX7_AGRVS
tolQ; protein TolQ; K03562 biopolymer transport protein TolQ
Protein TolQ {ECO:0000313|EMBL:ACM37605.1}; TaxID=311402 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium vitis (strain S4 / ATCC BAA-846) (Rhizobium vitis; (strain S4)).;"
SCNpilot_expt_1000_bf_scaffold_716_curated_7
Rhizobium sp. CF080, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3775..4230
DNA (456bp) protein (152aa)
TolR protein n=1 Tax=Rhizobium sp. CF080 RepID=J3AXN5_9RHIZ
Protein TolR {ECO:0000313|EMBL:EUB97210.1}; TaxID=1144310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF080.;"
tolR; putative transport transmembrane protein; K03560 biopolymer transport protein TolR
SCNpilot_expt_1000_bf_scaffold_716_curated_8
Rhizobium sp. YS-1r, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4280..5452
DNA (1173bp) protein (391aa)
Uncharacterized protein n=1 Tax=Rhizobium sp. RepID=L0NHT1_RHISP
Signal peptide protein {ECO:0000313|EMBL:KGD99833.1}; TaxID=1532558 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. YS-1r.;"
tolA; hypothetical protein
SCNpilot_expt_1000_bf_scaffold_716_curated_9
Rhizobium sp. YS-1r, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5466..6776
DNA (1311bp) protein (437aa)
Protein TolB n=1 Tax=Rhizobium sp. RepID=L0NH26_RHISP
Protein TolB {ECO:0000256|HAMAP-Rule:MF_00671}; Flags: Precursor;; TaxID=1532558 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. YS-1r.;"
tolB; translocation protein TolB; K03641 TolB protein
SCNpilot_expt_1000_bf_scaffold_716_curated_10
Neorhizobium galegae, Neorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6953..7504
DNA (552bp) protein (184aa)
Outer membrane lipoprotein omp16 (Peptidoglycan-associated lipoprotein) n=1 Tax=Rhizobium sp. RepID=L0NHN5_RHISP
Outer membrane lipoprotein omp16 {ECO:0000313|EMBL:CDN49149.1}; TaxID=399 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Neorhizobium.;" source="Rhizobium galegae.;"
pal; peptidoglycan-associated lipoprotein; K03640 peptidoglycan-associated lipoprotein
SCNpilot_expt_1000_bf_scaffold_716_curated_11
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7707..8690
DNA (984bp) protein (328aa)
tol-pal system protein YbgF n=1 Tax=Rhizobium mongolense RepID=UPI0003B540E8
Tol-Pal system protein {ECO:0000313|EMBL:KEC74447.1}; TaxID=1408223 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. phaseoli CCGM1.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_716_curated_12
Rhizobium sp. YS-1r, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8697..10061
DNA (1365bp) protein (455aa)
tRNA(Ile)-lysidine synthase {ECO:0000256|HAMAP-Rule:MF_01161}; EC=6.3.4.19 {ECO:0000256|HAMAP-Rule:MF_01161};; tRNA(Ile)-2-lysyl-cytidine synthase {ECO:0000256|HAMAP-Rule:MF_01161}; tRNA(Ile)-lysidine synthetase {ECO:0000256|HAMAP-Rule:MF_01161}; TaxID=1532558 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. YS-1r.;"
cell cycle protein MesJ/cytosine deaminase-related protein; K04075 tRNA(Ile)-lysidine synthase [EC:6.3.4.19]
tRNA(Ile)-lysidine synthase n=1 Tax=Rhizobium sp. AP16 RepID=J2W737_9RHIZ
SCNpilot_expt_1000_bf_scaffold_716_curated_13
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10159..12069
DNA (1911bp) protein (637aa)
ATP-dependent zinc metalloprotease FtsH {ECO:0000256|HAMAP-Rule:MF_01458}; EC=3.4.24.- {ECO:0000256|HAMAP-Rule:MF_01458};; TaxID=1336745 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium radiobacter DSM 30147.;"
ftsH; metalloprotease; K03798 cell division protease FtsH [EC:3.4.24.-] rbh
ATP-dependent zinc metalloprotease FtsH n=1 Tax=Agrobacterium tumefaciens CCNWGS0286 RepID=G6XVS3_RHIRD
SCNpilot_expt_1000_bf_scaffold_716_curated_14
Rhizobium sp., Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13588..13713
DNA (126bp) protein (42aa)
Phosphoglucosamine mutase {ECO:0000256|HAMAP-Rule:MF_01554, ECO:0000256|RuleBase:RU004327}; EC=5.4.2.10 {ECO:0000256|HAMAP-Rule:MF_01554, ECO:0000256|RuleBase:RU004327};; TaxID=391 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp.;"
glmM; phosphoglucosamine mutase; K03431 phosphoglucosamine mutase [EC:5.4.2.10]
Phosphoglucosamine mutase n=1 Tax=Rhizobium sp. RepID=L0NH23_RHISP
SCNpilot_expt_1000_bf_scaffold_716_curated_15
Rhizobium nepotum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14055..15068
DNA (1014bp) protein (338aa)
hypothetical protein n=1 Tax=Bradyrhizobium elkanii RepID=UPI00036EFBA0
Uncharacterized protein {ECO:0000313|EMBL:KJF69415.1}; TaxID=1368418 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium nepotum 39/7.;"
LuxR family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_716_curated_16
Rhizobium sp. CF142, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15303..16157
DNA (855bp) protein (285aa)
Opacity protein n=1 Tax=Rhizobium sp. CF142 RepID=J1SZC9_9RHIZ
Opacity protein {ECO:0000313|EMBL:EJJ24701.1}; Flags: Precursor;; TaxID=1144314 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF142.;"
surface antigen msp4 family protein
SCNpilot_expt_1000_bf_scaffold_716_curated_17
Sinorhizobium medicae, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16321..17064
DNA (744bp) protein (248aa)
hypothetical protein n=1 Tax=Rhizobium giardinii RepID=UPI0003746966
putative heat resistant agglutinin 1 signal peptide protein
Putative heat resistant agglutinin 1 signal peptide protein {ECO:0000313|EMBL:ABR61450.1}; Flags: Precursor;; TaxID=366394 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium medicae (strain WSM419) (Ensifer medicae).;"
SCNpilot_expt_1000_bf_scaffold_716_curated_18
Rhizobium etli, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17075..17476)
DNA (402bp) protein (134aa)
hypothetical protein n=1 Tax=Rhizobium sp. (strain BR816) RepID=UPI00037843EE
Uncharacterized protein {ECO:0000313|EMBL:AIC27402.1}; TaxID=1432050 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium etli bv. mimosae str. IE4771.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_716_curated_19
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17712..18890
DNA (1179bp) protein (393aa)
Phosphoserine transaminase {ECO:0000256|SAAS:SAAS00182444}; EC=2.6.1.52 {ECO:0000256|SAAS:SAAS00182444};; TaxID=1107544 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium tumefaciens 5A.;"
Phosphoserine aminotransferase (EC:2.6.1.52); K00831 phosphoserine aminotransferase [EC:2.6.1.52]
Phosphoserine aminotransferase n=1 Tax=Agrobacterium tumefaciens 5A RepID=H0H4A4_RHIRD
SCNpilot_expt_1000_bf_scaffold_716_curated_20
Agrobacterium arsenijevicii, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18968..20563
DNA (1596bp) protein (532aa)
D-3-phosphoglycerate dehydrogenase (EC:1.1.1.95); K00058 D-3-phosphoglycerate dehydrogenase [EC:1.1.1.95]
D-3-phosphoglycerate dehydrogenase n=2 Tax=Agrobacterium RepID=F0LCK0_AGRSH
3-phosphoglycerate dehydrogenase {ECO:0000313|EMBL:KJF73201.1}; TaxID=1585697 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium sp. KFB 330.;"
SCNpilot_expt_1000_bf_scaffold_716_curated_21
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20704..21972
DNA (1269bp) protein (423aa)
tRNA-specific 2-thiouridylase MnmA {ECO:0000256|HAMAP-Rule:MF_00144}; EC=2.8.1.- {ECO:0000256|HAMAP-Rule:MF_00144};; TaxID=358 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Rhizobium radiobacter (Agrobacterium tumefaciens) (Agrobacterium; radiobacter).;"
mnmA; tRNA-specific 2-thiouridylase MnmA; K00566 tRNA-specific 2-thiouridylase [EC:2.8.1.-]
tRNA-specific 2-thiouridylase MnmA n=1 Tax=Agrobacterium sp. ATCC 31749 RepID=F5J600_9RHIZ
SCNpilot_expt_1000_bf_scaffold_716_curated_22
Rhizobium phage RR1-A, Caudovirales, Viruses

Not on your lists

comp(22151..23773)
DNA (1623bp) protein (541aa)
Recombinase n=1 Tax=Rhizobium phage RR1-A RepID=R9TP69_9CAUD
Recombinase {ECO:0000313|EMBL:AGN34411.1}; TaxID=929833 species="Viruses; dsDNA viruses, no RNA stage; Caudovirales; Myoviridae.;" source="Rhizobium phage RR1-A.;"
resolvase domain-containing protein
SCNpilot_expt_1000_bf_scaffold_716_curated_23
Rhodobacter sphaeroides, Rhodobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23874..24113)
DNA (240bp) protein (80aa)
Putative uncharacterized protein n=1 Tax=Rhodobacter sphaeroides WS8N RepID=F3U385_RHOSH
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACM03896.1}; TaxID=557760 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodobacter.;" source="Rhodobacter sphaeroides (strain KD131 / KCTC 12085).;"
SCNpilot_expt_1000_bf_scaffold_716_curated_24
Rhizobium sp., Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24103..24396)
DNA (294bp) protein (98aa)
Uncharacterized protein n=1 Tax=Rhizobium sp. RepID=L0NDX4_RHISP
Uncharacterized protein {ECO:0000313|EMBL:CCF19079.1}; TaxID=391 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp.;"
SCNpilot_expt_1000_bf_scaffold_716_curated_25
Ochrobactrum intermedium, Ochrobactrum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24389..25057)
DNA (669bp) protein (223aa)
Uncharacterized protein n=1 Tax=Ochrobactrum intermedium M86 RepID=M5JJJ3_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:ELT46298.1}; TaxID=1234597 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Ochrobactrum.;" source="Ochrobactrum intermedium M86.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_716_curated_26
unknown

Not on your lists

comp(25050..25274)
DNA (225bp) protein (75aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_716_curated_27
Burkholderia dolosa, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25553..27175)
DNA (1623bp) protein (541aa)
hypothetical protein n=1 Tax=Methylobacterium sp. 88A RepID=UPI00037FB06D
Uncharacterized protein {ECO:0000313|EMBL:EAY68955.1}; TaxID=350701 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; Burkholderia cepacia complex.;" source="Burkholderia dolosa AU0158.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_716_curated_28
Rhizobium sp. CF080, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27492..27755)
DNA (264bp) protein (88aa)
Uncharacterized protein n=1 Tax=Rhizobium sp. CF080 RepID=J3C9C9_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EUB97233.1}; TaxID=1144310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF080.;"
SCNpilot_expt_1000_bf_scaffold_716_curated_29
Hyphomonas jannaschiana, Hyphomonas, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27755..28264)
DNA (510bp) protein (170aa)
single-stranded DNA-binding protein n=1 Tax=Rhizobium sp. (strain BR816) RepID=UPI00038211B6
Single-stranded DNA-binding protein {ECO:0000256|HAMAP-Rule:MF_00984, ECO:0000256|RuleBase:RU000524}; Short=SSB {ECO:0000256|HAMAP-Rule:MF_00984};; TaxID=1280952 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Hyphomonadaceae; Hyphomonas.;" source="Hyphomonas jannaschiana VP2.;"
ssb; single-stranded DNA-binding protein
SCNpilot_expt_1000_bf_scaffold_716_curated_30
Mesorhizobium sp. LSJC280B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28254..28757)
DNA (504bp) protein (168aa)
UPI0003CE6AB5 related cluster n=1 Tax=unknown RepID=UPI0003CE6AB5
Uncharacterized protein {ECO:0000313|EMBL:ESW92680.1}; TaxID=1287336 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSJC280B00.;"
hypothetical protein
Displaying items 1-30 of 133 in total

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