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SCNpilot_expt_1000_bf_scaffold_2223_curated

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Displaying 20 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_2223_curated_1
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2..319)
DNA (318bp) protein (106aa)
hypothetical protein n=2 Tax=Xanthobacteraceae RepID=UPI000374794B
Putative High-affinity branched-chain amino acid transport system permease protein livM (LIV-I protein M) {ECO:0000313|EMBL:CDX56473.1}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
inner-membrane translocator; K01998 branched-chain amino acid transport system permease protein
SCNpilot_expt_1000_bf_scaffold_2223_curated_2
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(334..654)
DNA (321bp) protein (107aa)
hypothetical protein n=1 Tax=Xanthobacteraceae RepID=UPI00037E0F0D
Leucine/isoleucine/valine transporter subunit membrane component of ABC superfamily {ECO:0000313|EMBL:CDX56475.1}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
ABC transporter inner membrane protein
SCNpilot_expt_1000_bf_scaffold_2223_curated_3
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1357..2475)
DNA (1119bp) protein (373aa)
hypothetical protein n=1 Tax=Xanthobacteraceae RepID=UPI0003663979
Putative Extracellular ligand-binding receptor {ECO:0000313|EMBL:CDX32479.1}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
extracellular ligand-binding receptor; K01999 branched-chain amino acid transport system substrate-binding protein
SCNpilot_expt_1000_bf_scaffold_2223_curated_4
Xanthobacter autotrophicus, Xanthobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2614..2964)
DNA (351bp) protein (117aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI00037845B0
short-chain dehydrogenase/reductase SDR
Short-chain dehydrogenase/reductase SDR {ECO:0000313|EMBL:ABS66387.1}; TaxID=78245 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Xanthobacter.;" source="Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2).;"
SCNpilot_expt_1000_bf_scaffold_2223_curated_5
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

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comp(3030..3377)
DNA (348bp) protein (116aa)
Putative 3-oxoacyl-(Acyl-carrier-protein) reductase n=1 Tax=Bradyrhizobium sp. STM 3809 RepID=H0TAF8_9BRAD
short-chain dehydrogenase
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
SCNpilot_expt_1000_bf_scaffold_2223_curated_6
Sulfitobacter pseudonitzschiae, Sulfitobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3403..4098)
DNA (696bp) protein (232aa)
Probable acetoacetate decarboxylase {ECO:0000256|HAMAP-Rule:MF_00597}; Short=AAD {ECO:0000256|HAMAP-Rule:MF_00597};; Short=ADC {ECO:0000256|HAMAP-Rule:MF_00597};; EC=4.1.1.4 {ECO:0000256|HAMAP-Rule:MF_00597};; TaxID=1402135 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Sulfitobacter.;" source="Sulfitobacter pseudonitzschiae.;"
adc; acetoacetate decarboxylase (EC:4.1.1.4); K01574 acetoacetate decarboxylase [EC:4.1.1.4]
Probable acetoacetate decarboxylase n=1 Tax=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) RepID=A5EBU7_BRASB
SCNpilot_expt_1000_bf_scaffold_2223_curated_7
Methylobacterium radiotolerans, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4183..4326)
DNA (144bp) protein (48aa)
aldehyde dehydrogenase; K00135 succinate-semialdehyde dehydrogenase (NADP+) [EC:1.2.1.16]
Aldehyde dehydrogenase n=1 Tax=Methylobacterium mesophilicum SR1.6/6 RepID=M7Z3P3_9RHIZ
Aldehyde Dehydrogenase {ECO:0000313|EMBL:ACB27478.1}; TaxID=426355 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium radiotolerans (strain ATCC 27329 / DSM 1819 / JCM; 2831).;"
SCNpilot_expt_1000_bf_scaffold_2223_curated_8
Ketogulonicigenium vulgare, Ketogulonicigenium, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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4854..5768
DNA (915bp) protein (305aa)
Uncharacterized protein n=1 Tax=Ketogulonicigenium vulgare (strain WSH-001) RepID=F9Y4Z4_KETVW
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEM40626.1}; TaxID=759362 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Ketogulonicigenium.;" source="Ketogulonicigenium vulgare (strain WSH-001).;"
SCNpilot_expt_1000_bf_scaffold_2223_curated_9
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5639..6742)
DNA (1104bp) protein (368aa)
alcohol dehydrogenase zinc-binding domain-containing protein; K00121 S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1]
Zn-dependent alcohol dehydrogenase n=1 Tax=Sphingomonas-like bacterium B12 RepID=UPI0003B72AA1
Uncharacterized protein {ECO:0000313|EMBL:KKB08035.1}; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chinhatensis.;"
SCNpilot_expt_1000_bf_scaffold_2223_curated_10
Azospirillum thiophilum, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(6739..8298)
DNA (1560bp) protein (520aa)
AmP-dependent synthetase and ligase n=1 Tax=Azospirillum brasilense Sp245 RepID=G8AV08_AZOBR
AMP-dependent synthetase {ECO:0000313|EMBL:KJR63016.1}; TaxID=528244 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum thiophilum.;"
amP-dependent synthetase and ligase
SCNpilot_expt_1000_bf_scaffold_2223_curated_11
Acetobacteraceae bacterium AT-5844, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(8332..9105)
DNA (774bp) protein (258aa)
Enoyl-CoA hydratase/isomerase family protein n=1 Tax=Acetobacteraceae bacterium AT-5844 RepID=H0A7X7_9PROT
Enoyl-CoA hydratase/isomerase family protein {ECO:0000313|EMBL:EHL96220.1}; TaxID=1054213 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; unclassified Acetobacteraceae.;" source="Acetobacteraceae bacterium AT-5844.;"
enoyl-CoA hydratase/isomerase
SCNpilot_expt_1000_bf_scaffold_2223_curated_12
Azospirillum thiophilum, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(9264..10061)
DNA (798bp) protein (266aa)
Pca regulon regulatory protein n=2 Tax=Azospirillum brasilense Sp245 RepID=G8AV13_AZOBR
IclR family transcriptional regulator {ECO:0000313|EMBL:KJR63363.1}; TaxID=528244 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum thiophilum.;"
Pca regulon regulatory protein
SCNpilot_expt_1000_bf_scaffold_2223_curated_13
Streptosporangium roseum, Streptosporangium, Streptosporangiales, Actinobacteria, Actinobacteria, Bacteria

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comp(10167..10853)
DNA (687bp) protein (229aa)
Transcriptional regulator, GntR family n=1 Tax=Streptosporangium roseum (strain ATCC 12428 / DSM 43021 / JCM 3005 / NI 9100) RepID=D2ARH5_STRRD
GntR family transcriptional regulator
Transcriptional regulator, GntR family {ECO:0000313|EMBL:ACZ90315.1}; TaxID=479432 species="Bacteria; Actinobacteria; Streptosporangiales; Streptosporangiaceae; Streptosporangium.;" source="Streptosporangium roseum (strain ATCC 12428 / DSM 43021 / JCM 3005 /; NI 9100).;"
SCNpilot_expt_1000_bf_scaffold_2223_curated_14
Streptosporangium roseum, Streptosporangium, Streptosporangiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(10882..11631)
DNA (750bp) protein (250aa)
ABC transporter; K02028 polar amino acid transport system ATP-binding protein [EC:3.6.3.21]
ABC transporter related protein n=1 Tax=Streptosporangium roseum (strain ATCC 12428 / DSM 43021 / JCM 3005 / NI 9100) RepID=D2ARH3_STRRD
ABC transporter related protein {ECO:0000313|EMBL:ACZ90313.1}; TaxID=479432 species="Bacteria; Actinobacteria; Streptosporangiales; Streptosporangiaceae; Streptosporangium.;" source="Streptosporangium roseum (strain ATCC 12428 / DSM 43021 / JCM 3005 /; NI 9100).;"
SCNpilot_expt_1000_bf_scaffold_2223_curated_15
Streptosporangium roseum, Streptosporangium, Streptosporangiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(11633..12742)
DNA (1110bp) protein (370aa)
ABC-type amino acid transport system permease component-like protein n=1 Tax=Streptosporangium roseum (strain ATCC 12428 / DSM 43021 / JCM 3005 / NI 9100) RepID=D2ARH2_STRRD
amino acid ABC transporter permease
ABC-type amino acid transport system permease component-like protein {ECO:0000313|EMBL:ACZ90312.1}; TaxID=479432 species="Bacteria; Actinobacteria; Streptosporangiales; Streptosporangiaceae; Streptosporangium.;" source="Streptosporangium roseum (strain ATCC 12428 / DSM 43021 / JCM 3005 /; NI 9100).;"
SCNpilot_expt_1000_bf_scaffold_2223_curated_16
Streptosporangium roseum, Streptosporangium, Streptosporangiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(12739..13596)
DNA (858bp) protein (286aa)
Extracellular solute-binding protein, family 3 n=1 Tax=Streptosporangium roseum (strain ATCC 12428 / DSM 43021 / JCM 3005 / NI 9100) RepID=D2ARH1_STRRD
extracellular solute-binding protein
Extracellular solute-binding protein, family 3 {ECO:0000313|EMBL:ACZ90311.1}; TaxID=479432 species="Bacteria; Actinobacteria; Streptosporangiales; Streptosporangiaceae; Streptosporangium.;" source="Streptosporangium roseum (strain ATCC 12428 / DSM 43021 / JCM 3005 /; NI 9100).;"
SCNpilot_expt_1000_bf_scaffold_2223_curated_17
Streptosporangium roseum, Streptosporangium, Streptosporangiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(13685..14434)
DNA (750bp) protein (250aa)
hypothetical protein; K01574 acetoacetate decarboxylase [EC:4.1.1.4]
Uncharacterized protein n=1 Tax=Streptosporangium roseum (strain ATCC 12428 / DSM 43021 / JCM 3005 / NI 9100) RepID=D2ARH4_STRRD
Uncharacterized protein {ECO:0000313|EMBL:ACZ90314.1}; TaxID=479432 species="Bacteria; Actinobacteria; Streptosporangiales; Streptosporangiaceae; Streptosporangium.;" source="Streptosporangium roseum (strain ATCC 12428 / DSM 43021 / JCM 3005 /; NI 9100).;"
SCNpilot_expt_1000_bf_scaffold_2223_curated_18
Streptomyces nodosus, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

14721..15488
DNA (768bp) protein (256aa)
hypothetical protein; K01574 acetoacetate decarboxylase [EC:4.1.1.4]
Uncharacterized protein n=1 Tax=Streptosporangium roseum (strain ATCC 12428 / DSM 43021 / JCM 3005 / NI 9100) RepID=D2ARH4_STRRD
Uncharacterized protein {ECO:0000313|EMBL:AJE39005.1}; TaxID=40318 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces nodosus.;"
SCNpilot_expt_1000_bf_scaffold_2223_curated_19
Sinorhizobium medicae, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15490..16326
DNA (837bp) protein (279aa)
pyrroline-5-carboxylate reductase (EC:1.5.1.2); K00286 pyrroline-5-carboxylate reductase [EC:1.5.1.2]
Pyrroline-5-carboxylate reductase {ECO:0000256|HAMAP-Rule:MF_01925}; Short=P5C reductase {ECO:0000256|HAMAP-Rule:MF_01925};; Short=P5CR {ECO:0000256|HAMAP-Rule:MF_01925};; EC=1.5.1.2 {ECO:0000256|HAMAP-Rule:MF_01925};; PCA reductase {ECO:0000256|HAMAP-Rule:MF_01925}; TaxID=366394 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium medicae (strain WSM419) (Ensifer medicae).;"
Pyrroline-5-carboxylate reductase n=1 Tax=Sinorhizobium medicae (strain WSM419) RepID=A6UKQ4_SINMW
SCNpilot_expt_1000_bf_scaffold_2223_curated_20
Ochrobactrum sp. SJY1, Ochrobactrum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(16375..16545)
DNA (171bp) protein (57aa)
hypothetical protein n=1 Tax=Sphingobium xenophagum RepID=UPI0002EE01D5
Transcriptional regulator tetr family {ECO:0000313|EMBL:AIH15793.1}; TaxID=1526653 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Ochrobactrum.;" source="Ochrobactrum sp. SJY1.;"
Displaying 20 items

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