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SCNpilot_expt_1000_bf_scaffold_2837_curated

Search features with annotation key words

Displaying items 1-30 of 33 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_2837_curated_1
Agrobacterium vitis, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(119..550)
DNA (432bp) protein (144aa)
Transcriptional regulator AsnC family n=1 Tax=Agrobacterium vitis (strain S4 / ATCC BAA-846) RepID=B9JZ82_AGRVS
transcriptional regulator AsnC family
Transcriptional regulator AsnC family {ECO:0000313|EMBL:ACM37327.1}; TaxID=311402 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium vitis (strain S4 / ATCC BAA-846) (Rhizobium vitis; (strain S4)).;"
SCNpilot_expt_1000_bf_scaffold_2837_curated_2
Agrobacterium rhizogenes, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

675..1802
DNA (1128bp) protein (376aa)
Saccharopine dehydrogenase n=1 Tax=Rhizobium sp. PDO1-076 RepID=H4F9T4_9RHIZ
Saccharopine dehydrogenase {ECO:0000313|EMBL:KEA04421.1}; TaxID=359 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium rhizogenes.;"
dehydrogenase
SCNpilot_expt_1000_bf_scaffold_2837_curated_3
Sinorhizobium americanum, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2021..2275
DNA (255bp) protein (85aa)
hypothetical protein n=1 Tax=Rhizobium leguminosarum RepID=UPI0003821ADB
Uncharacterized protein {ECO:0000313|EMBL:KEC80808.1}; TaxID=1408224 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium americanum CCGM7.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2837_curated_4
Rhizobium sp. YS-1r, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2298..2597
DNA (300bp) protein (100aa)
Uncharacterized protein n=1 Tax=Rhizobium freirei PRF 81 RepID=N6V6W7_9RHIZ
Transporter {ECO:0000313|EMBL:KGD95025.1}; TaxID=1532558 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. YS-1r.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2837_curated_5
Rhizobium sp. CF142, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2627..2869
DNA (243bp) protein (81aa)
Uncharacterized protein n=1 Tax=Rhizobium sp. CF142 RepID=J2B4H8_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EJJ30925.1}; TaxID=1144314 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF142.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2837_curated_6
Nitratireductor pacificus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2910..3623)
DNA (714bp) protein (238aa)
aldehyde dehydrogenase; K00135 succinate-semialdehyde dehydrogenase (NADP+) [EC:1.2.1.16]
Aldehyde dehydrogenase n=1 Tax=Nitratireductor pacificus pht-3B RepID=K2MLT6_9RHIZ
Aldehyde dehydrogenase {ECO:0000313|EMBL:EKF18177.1}; TaxID=391937 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor pacificus pht-3B.;"
SCNpilot_expt_1000_bf_scaffold_2837_curated_7
unknown

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3767..4414
DNA (648bp) protein (216aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_2837_curated_8
Agrobacterium vitis, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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4963..6318
DNA (1356bp) protein (452aa)
Sensory methylation accepting chemotaxis protein n=1 Tax=Agrobacterium vitis (strain S4 / ATCC BAA-846) RepID=B9JYA0_AGRVS
sensory methylation accepting chemotaxis protein
Sensory methylation accepting chemotaxis protein {ECO:0000313|EMBL:ACM37130.1}; TaxID=311402 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium vitis (strain S4 / ATCC BAA-846) (Rhizobium vitis; (strain S4)).;"
SCNpilot_expt_1000_bf_scaffold_2837_curated_9
Aquamicrobium defluvii, Aquamicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6421..6816)
DNA (396bp) protein (132aa)
GreA/GreB family elongation factor n=1 Tax=Mesorhizobium sp. (strain BNC1) RepID=Q11G81_MESSB
Transcription elongation factor {ECO:0000313|EMBL:EXL09325.1}; TaxID=69279 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Aquamicrobium.;" source="Aquamicrobium defluvii.;"
nucleoside diphosphate kinase regulator; K06140 regulator of nucleoside diphosphate kinase
SCNpilot_expt_1000_bf_scaffold_2837_curated_10
Nitratireductor pacificus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7163..8338)
DNA (1176bp) protein (392aa)
ABC transporter substrate-binding protein n=1 Tax=Hoeflea sp. 108 RepID=UPI00036BD216
Extracellular ligand-binding receptor {ECO:0000313|EMBL:EKF18180.1}; TaxID=391937 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor pacificus pht-3B.;"
extracellular ligand-binding receptor
SCNpilot_expt_1000_bf_scaffold_2837_curated_11
Nitratireductor pacificus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8580..9449)
DNA (870bp) protein (290aa)
LysR family transcriptional regulator n=1 Tax=Nitratireductor pacificus pht-3B RepID=K2MLT1_9RHIZ
LysR family transcriptional regulator {ECO:0000313|EMBL:EKF18172.1}; TaxID=391937 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor pacificus pht-3B.;"
LysR family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_2837_curated_12
Nitratireductor pacificus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9596..10750
DNA (1155bp) protein (385aa)
monooxygenase n=1 Tax=Hoeflea sp. 108 RepID=UPI000368934F
Monooxygenase FAD-binding protein {ECO:0000313|EMBL:EKF18173.1}; TaxID=391937 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor pacificus pht-3B.;"
monooxygenase FAD-binding
SCNpilot_expt_1000_bf_scaffold_2837_curated_13
Ochrobactrum anthropi, Ochrobactrum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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10780..11568
DNA (789bp) protein (263aa)
dioxygenase n=1 Tax=Hoeflea sp. 108 RepID=UPI0003817750
putative dioxygenase
Putative dioxygenase {ECO:0000313|EMBL:ABS17092.1}; TaxID=439375 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Ochrobactrum.;" source="Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168).;"
SCNpilot_expt_1000_bf_scaffold_2837_curated_14
Nitratireductor pacificus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12121..12453
DNA (333bp) protein (111aa)
hypothetical protein n=1 Tax=Hoeflea sp. 108 RepID=UPI000364FF2F
Alpha/beta hydrolase domain-containing protein {ECO:0000313|EMBL:EKF18175.1}; TaxID=391937 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor pacificus pht-3B.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2837_curated_15
Nitratireductor pacificus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12638..13549)
DNA (912bp) protein (304aa)
hypothetical protein n=1 Tax=Hoeflea sp. 108 RepID=UPI000378D273
LysR family transcriptional regulator {ECO:0000313|EMBL:EKF18176.1}; TaxID=391937 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor pacificus pht-3B.;"
LysR family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_2837_curated_16
Nitratireductor pacificus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13806..14759
DNA (954bp) protein (318aa)
dihydrodipicolinate synthase; K01714 dihydrodipicolinate synthase [EC:4.2.1.52]
dihydrodipicolinate synthetase n=1 Tax=Hoeflea sp. 108 RepID=UPI000361C762
Dihydrodipicolinate synthetase {ECO:0000313|EMBL:EKF18178.1}; TaxID=391937 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor pacificus pht-3B.;"
SCNpilot_expt_1000_bf_scaffold_2837_curated_17
Nitratireductor pacificus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14808..15353
DNA (546bp) protein (182aa)
3-hydroxyanthranilate 3,4-dioxygenase {ECO:0000256|HAMAP-Rule:MF_00825}; EC=1.13.11.6 {ECO:0000256|HAMAP-Rule:MF_00825};; 3-hydroxyanthranilate oxygenase {ECO:0000256|HAMAP-Rule:MF_00825}; 3-hydroxyanthranilic acid dioxygenase {ECO:0000256|HAMAP-Rule:MF_00825}; TaxID=391937 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor pacificus pht-3B.;"
3-hydroxyanthranilate 3,4-dioxygenase (EC:1.13.11.6); K00452 3-hydroxyanthranilate 3,4-dioxygenase [EC:1.13.11.6]
3-hydroxyanthranilate 3,4-dioxygenase n=1 Tax=Hoeflea sp. 108 RepID=UPI0003828848
SCNpilot_expt_1000_bf_scaffold_2837_curated_18
Nitratireductor pacificus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15470..16633
DNA (1164bp) protein (388aa)
ABC transporter substrate-binding protein n=1 Tax=Hoeflea sp. 108 RepID=UPI00036076F2
ABC transporter ATP-binding protein {ECO:0000313|EMBL:EKF18171.1}; TaxID=391937 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor pacificus pht-3B.;"
ABC transporter ATP-binding protein; K01999 branched-chain amino acid transport system substrate-binding protein
SCNpilot_expt_1000_bf_scaffold_2837_curated_19
Nitratireductor pacificus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16712..17626
DNA (915bp) protein (305aa)
ABC transporter permease n=1 Tax=Hoeflea sp. 108 RepID=UPI00037154AB
Inner-membrane translocator {ECO:0000313|EMBL:EKF18170.1}; TaxID=391937 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor pacificus pht-3B.;"
Inner-membrane translocator; K01997 branched-chain amino acid transport system permease protein
SCNpilot_expt_1000_bf_scaffold_2837_curated_20
Nitratireductor pacificus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17725..18666
DNA (942bp) protein (314aa)
ABC transporter permease n=1 Tax=Hoeflea sp. 108 RepID=UPI0003708537
Inner-membrane translocator {ECO:0000313|EMBL:EKF18169.1}; TaxID=391937 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor pacificus pht-3B.;"
Inner-membrane translocator; K01998 branched-chain amino acid transport system permease protein
SCNpilot_expt_1000_bf_scaffold_2837_curated_21
Nitratireductor pacificus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18663..19418
DNA (756bp) protein (252aa)
hypothetical protein n=1 Tax=Hoeflea sp. 108 RepID=UPI00036F76C7
ABC transporter {ECO:0000313|EMBL:EKF18168.1}; TaxID=391937 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor pacificus pht-3B.;"
ABC transporter; K01995 branched-chain amino acid transport system ATP-binding protein
SCNpilot_expt_1000_bf_scaffold_2837_curated_22
Polymorphum gilvum, Polymorphum, Alphaproteobacteria, Proteobacteria, Bacteria

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19412..20113
DNA (702bp) protein (234aa)
ABC transporter ATP-binding protein n=1 Tax=Hoeflea sp. 108 RepID=UPI0003698834
amino acid ABC transporter ATPase; K01996 branched-chain amino acid transport system ATP-binding protein
ABC-type amino acid transport system, ATPase component protein {ECO:0000313|EMBL:ADZ70296.1}; TaxID=991905 species="Bacteria; Proteobacteria; Alphaproteobacteria; Polymorphum.;" source="Polymorphum gilvum (strain LMG 25793 / CGMCC 1.9160 / SL003B-26A1).;"
SCNpilot_expt_1000_bf_scaffold_2837_curated_23
Nitratireductor pacificus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20100..20927
DNA (828bp) protein (276aa)
Probable L-aspartate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_01265}; EC=1.4.1.21 {ECO:0000256|HAMAP-Rule:MF_01265};; TaxID=391937 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor pacificus pht-3B.;"
L-aspartate dehydrogenase; K06989 aspartate dehydrogenase [EC:1.4.1.21]
hypothetical protein n=1 Tax=Hoeflea sp. 108 RepID=UPI00036E5E56
SCNpilot_expt_1000_bf_scaffold_2837_curated_24
unknown

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21054..21230
DNA (177bp) protein (59aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_2837_curated_25
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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21368..22468
DNA (1101bp) protein (367aa)
Carboxynorspermidine/carboxyspermidine decarboxylase {ECO:0000256|PIRNR:PIRNR038941}; Short=CANS DC/CAS DC {ECO:0000256|PIRNR:PIRNR038941};; Short=CANSDC/CASDC {ECO:0000256|PIRNR:PIRNR038941};; EC=4.1.1.96 {ECO:0000256|PIRNR:PIRNR038941};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
nspC; carboxynorspermidine decarboxylase; K13747 carboxynorspermidine decarboxylase [EC:4.1.1.-]
Carboxynorspermidine/carboxyspermidine decarboxylase n=1 Tax=Rhizobium sp. RepID=L0NI20_RHISP
SCNpilot_expt_1000_bf_scaffold_2837_curated_26
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22502..23740
DNA (1239bp) protein (413aa)
Saccharopine dehydrogenase n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CS54_9RHIZ
Saccharopine dehydrogenase {ECO:0000313|EMBL:EYR81633.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2837_curated_27
Rhizobium sp. R1-200B4, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23798..25000)
DNA (1203bp) protein (401aa)
Flavoprotein, HI0933 family/uncharacterized flavoprotein, PP_4765 family n=1 Tax=Rhizobium sp. CF080 RepID=J2SP88_9RHIZ
NAD(FAD)-utilizing dehydrogenase {ECO:0000313|EMBL:KEQ04384.1}; TaxID=1509405 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. R1-200B4.;"
hypothetical protein; K07007
SCNpilot_expt_1000_bf_scaffold_2837_curated_28
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25106..25300)
DNA (195bp) protein (65aa)
Uncharacterized protein n=1 Tax=Rhizobium leguminosarum bv. trifolii WSM2297 RepID=J0WCY4_RHILT
Uncharacterized protein {ECO:0000313|EMBL:AHF88447.1}; TaxID=754523 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii WSM1689.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2837_curated_29
Rhizobium etli, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25366..25599)
DNA (234bp) protein (78aa)
30S ribosomal protein S21 n=2 Tax=Rhizobium etli RepID=Q2K1Q4_RHIEC
rpsU-3; 30S ribosomal protein S21 3
30S ribosomal protein S21 {ECO:0000256|HAMAP-Rule:MF_00358, ECO:0000256|RuleBase:RU000667}; TaxID=347834 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium etli (strain CFN 42 / ATCC 51251).;"
SCNpilot_expt_1000_bf_scaffold_2837_curated_30
Hoeflea sp. IMCC20628, Hoeflea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25997..26755)
DNA (759bp) protein (253aa)
Glutaredoxin-like protein n=1 Tax=Oceaniovalibus guishaninsula JLT2003 RepID=K2H9R2_9RHOB
Glutaredoxin-like protein {ECO:0000313|EMBL:AKI03506.1}; TaxID=1620421 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Hoeflea.;" source="Hoeflea sp. IMCC20628.;"
glutaredoxin
Displaying items 1-30 of 33 in total

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