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SCNpilot_expt_1000_bf_scaffold_6394_curated

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Displaying 12 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_6394_curated_1
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2..424
DNA (423bp) protein (141aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CYD1_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EYR83477.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein; K09983 hypothetical protein
SCNpilot_expt_1000_bf_scaffold_6394_curated_2
Devosia sp. LC5, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(467..1072)
DNA (606bp) protein (202aa)
DNA polymerase III subunit beta n=1 Tax=Oceanicola sp. S124 RepID=UPI000255811E
Uncharacterized protein {ECO:0000313|EMBL:KFC66371.1}; TaxID=1502724 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. LC5.;"
DNA polymerase, beta-like
SCNpilot_expt_1000_bf_scaffold_6394_curated_3
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1422..1658)
DNA (237bp) protein (79aa)
flavin reductase domain-containing protein; K09024 flavin reductase [EC:1.5.1.-]
Flavin reductase domain protein FMN-binding n=1 Tax=Rhizobium leguminosarum bv. trifolii (strain WSM2304) RepID=B6A2L3_RHILW
Flavin reductase domain protein FMN-binding {ECO:0000313|EMBL:ACI57686.1}; TaxID=395492 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii (strain WSM2304).;"
SCNpilot_expt_1000_bf_scaffold_6394_curated_4
Rhizobium freirei, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1956..3521)
DNA (1566bp) protein (522aa)
4-hydroxyphenylacetate 3-hydroxylase n=1 Tax=Rhizobium freirei PRF 81 RepID=N6V4F2_9RHIZ
4-hydroxyphenylacetate 3-hydroxylase {ECO:0000313|EMBL:ENN88765.1}; TaxID=363754 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium freirei PRF 81.;"
4-hydroxyphenylacetate 3-monooxygenase oxygenase component
SCNpilot_expt_1000_bf_scaffold_6394_curated_5
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3619..4494
DNA (876bp) protein (292aa)
AraC family transcriptional regulator n=1 Tax=Rhizobium leguminosarum RepID=UPI00036D83EA
DNA-binding domain-containing protein, AraC-type {ECO:0000313|EMBL:EJC64024.1}; TaxID=755176 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. viciae WSM1455.;"
AraC type helix-turn-helix-domain containing protein
SCNpilot_expt_1000_bf_scaffold_6394_curated_6
Ochrobactrum anthropi, Ochrobactrum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4473..5612)
DNA (1140bp) protein (380aa)
D-aminopeptidase {ECO:0000313|EMBL:CAA66259.1}; EC=3.4.11.19 {ECO:0000313|EMBL:CAA66259.1};; TaxID=529 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Ochrobactrum.;" source="Ochrobactrum anthropi.;"
D-aminopeptidase n=1 Tax=Ochrobactrum anthropi RepID=Q59632_OCHAN
peptidase S58 DmpA
SCNpilot_expt_1000_bf_scaffold_6394_curated_7
Ochrobactrum anthropi, Ochrobactrum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5609..6433)
DNA (825bp) protein (275aa)
Ornithine carbamoyltransferase {ECO:0000313|EMBL:ABS15514.1}; EC=2.1.3.3 {ECO:0000313|EMBL:ABS15514.1};; TaxID=439375 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Ochrobactrum.;" source="Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168).;"
Ornithine carbamoyltransferase n=1 Tax=Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168) RepID=A6X2R0_OCHA4
ornithine carbamoyltransferase; K11070 spermidine/putrescine transport system permease protein
SCNpilot_expt_1000_bf_scaffold_6394_curated_8
Ochrobactrum anthropi, Ochrobactrum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(6445..7344)
DNA (900bp) protein (300aa)
Binding-protein-dependent transport systems inner membrane component n=1 Tax=Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168) RepID=A6X2Q9_OCHA4
binding-protein-dependent transport systems inner membrane component; K11071 spermidine/putrescine transport system permease protein
Spermidine/putrescine ABC transporter permease {ECO:0000313|EMBL:EXL03109.1}; TaxID=529 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Ochrobactrum.;" source="Ochrobactrum anthropi.;"
SCNpilot_expt_1000_bf_scaffold_6394_curated_9
Ochrobactrum anthropi, Ochrobactrum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(7341..8432)
DNA (1092bp) protein (364aa)
spermidine/putrescine ABC transporter ATPase; K11072 spermidine/putrescine transport system ATP-binding protein [EC:3.6.3.31]
spermidine/putrescine ABC transporter ATPase n=1 Tax=Ochrobactrum anthropi RepID=UPI000287E8F4
Spermidine/putrescine ABC transporter ATPase subunit {ECO:0000313|EMBL:ABS15512.1}; TaxID=439375 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Ochrobactrum.;" source="Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168).;"
SCNpilot_expt_1000_bf_scaffold_6394_curated_10
Rhizobium freirei, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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8596..9642
DNA (1047bp) protein (349aa)
Putrescine-binding periplasmic protein n=1 Tax=Rhizobium freirei PRF 81 RepID=N6V1G4_9RHIZ
Putrescine-binding periplasmic protein {ECO:0000256|PIRNR:PIRNR019574}; TaxID=363754 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium freirei PRF 81.;"
extracellular solute-binding protein; K11069 spermidine/putrescine transport system substrate-binding protein
SCNpilot_expt_1000_bf_scaffold_6394_curated_11
Ochrobactrum anthropi, Ochrobactrum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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9704..10558
DNA (855bp) protein (285aa)
Transcriptional regulator, RpiR family n=1 Tax=Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168) RepID=A6X2Q6_OCHA4
RpiR family transcriptional regulator
RpiR family transcriptional regulator {ECO:0000313|EMBL:EXL03106.1}; TaxID=529 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Ochrobactrum.;" source="Ochrobactrum anthropi.;"
SCNpilot_expt_1000_bf_scaffold_6394_curated_12
Rhizobium sp. IRBG74, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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11117..11944
DNA (828bp) protein (276aa)
IS2 insertion element transposase InsAB' CP4-44 prophage n=1 Tax=Rhizobium sp. IRBG74 RepID=U4PXJ8_9RHIZ
IS2 insertion element transposase InsAB'; CP4-44 prophage
IS2 insertion element transposase InsAB' CP4-44 prophage {ECO:0000313|EMBL:CDI09820.1}; TaxID=424182 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. IRBG74.;"
Displaying 12 items

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