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SCNpilot_expt_1000_bf_scaffold_4056_curated

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Displaying 8 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_4056_curated_1
Paracoccus denitrificans, Paracoccus, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3..1193)
DNA (1191bp) protein (397aa)
aldehyde dehydrogenase; K00135 succinate-semialdehyde dehydrogenase (NADP+) [EC:1.2.1.16]
Succinate semialdehyde dehydrogenase {ECO:0000313|EMBL:ABL72480.1}; EC=1.2.1.16 {ECO:0000313|EMBL:ABL72480.1};; TaxID=318586 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Paracoccus.;" source="Paracoccus denitrificans (strain Pd 1222).;"
Succinate semialdehyde dehydrogenase n=1 Tax=Paracoccus denitrificans (strain Pd 1222) RepID=A1BAD6_PARDP
SCNpilot_expt_1000_bf_scaffold_4056_curated_2
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(1242..1427)
DNA (186bp) protein (62aa)
4-oxalocrotonate tautomerase (EC:5.3.2.-); K01821 4-oxalocrotonate tautomerase [EC:5.3.2.-]
hypothetical protein n=1 Tax=Amycolatopsis nigrescens RepID=UPI0003671E29
Small molecule metabolism degradation carbon compounds {ECO:0000313|EMBL:CDM25882.1}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castellaniella defragrans 65Phen.;"
SCNpilot_expt_1000_bf_scaffold_4056_curated_3
Sinorhizobium meliloti, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2213..3754
DNA (1542bp) protein (514aa)
ABC transporter periplasmic protein n=1 Tax=Sinorhizobium meliloti Rm41 RepID=K0P3Y4_RHIML
ABC transporter substrate-binding protein
ABC transporter, periplasmic solute-binding protein {ECO:0000313|EMBL:AAK64821.1}; TaxID=266834 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Rhizobium meliloti (strain 1021) (Ensifer meliloti) (Sinorhizobium; meliloti).;"
SCNpilot_expt_1000_bf_scaffold_4056_curated_4
Sinorhizobium meliloti, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3828..4778
DNA (951bp) protein (317aa)
ABC-type transporter, integral membrane subunit n=4 Tax=Rhizobium meliloti RepID=F6C0C4_SINMB
ABC transporter permease; K02033 peptide/nickel transport system permease protein
ABC transporter, permease {ECO:0000313|EMBL:CDH81472.1}; TaxID=1401243 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium meliloti RU11/001.;"
SCNpilot_expt_1000_bf_scaffold_4056_curated_5
Sinorhizobium meliloti, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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4775..5665
DNA (891bp) protein (297aa)
ABC transporter, permease n=1 Tax=Sinorhizobium meliloti CCNWSX0020 RepID=H0FU58_RHIML
ABC transporter permease
ABC transporter, permease {ECO:0000313|EMBL:EHK79389.1}; TaxID=1107881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium meliloti CCNWSX0020.;"
SCNpilot_expt_1000_bf_scaffold_4056_curated_6
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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5676..7166
DNA (1491bp) protein (497aa)
oligopeptide/dipeptide ABC transporter ATPase (EC:3.6.3.30)
Oligopeptide/dipeptide ABC transporter ATPase n=1 Tax=Sinorhizobium meliloti CCNWSX0020 RepID=H0FU59_RHIML
ABC transporter, ATP-binding protein {ECO:0000313|EMBL:EYR77914.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
SCNpilot_expt_1000_bf_scaffold_4056_curated_7

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7153..7743
DNA (591bp) protein (197aa)
Putative ABC transporter ATP-binding protein n=1 Tax=Caldilinea aerophila (strain DSM 14535 / JCM 11387 / NBRC 104270 / STL-6-O1) RepID=I0I7T1_CALAS
Uncharacterized protein {ECO:0000313|EMBL:KKL83222.1}; Flags: Fragment;; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
putative dipeptide/oligopeptide/nickel ABC transporter, ATP-binding protein
SCNpilot_expt_1000_bf_scaffold_4056_curated_8
Rhodococcus sp. Chr-9, Rhodococcus, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

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comp(7847..8584)
DNA (738bp) protein (246aa)
Amidohydrolase n=1 Tax=Rhodococcus pyridinivorans AK37 RepID=H0JRH1_9NOCA
Amidohydrolase {ECO:0000313|EMBL:KHJ74471.1}; TaxID=713612 species="Bacteria; Actinobacteria; Corynebacteriales; Nocardiaceae; Rhodococcus.;" source="Rhodococcus sp. Chr-9.;"
amidohydrolase
Displaying 8 items

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