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SCNpilot_expt_1000_bf_scaffold_1396_curated

Search features with annotation key words

Displaying items 1-30 of 88 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_1396_curated_1
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1..411
DNA (411bp) protein (137aa)
oxydo-reductase, aldo/keto reductase family (EC:1.1.1.-)
Aldo-keto reductase n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EU96_9RHIZ
Aldo-keto reductase {ECO:0000313|EMBL:EYR82257.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
SCNpilot_expt_1000_bf_scaffold_1396_curated_2
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

849..1925
DNA (1077bp) protein (359aa)
RND family efflux transporter, MFP subunit n=1 Tax=Rhizobium leguminosarum bv. trifolii WSM2012 RepID=J0C0L0_RHILT
RND family efflux transporter, MFP subunit {ECO:0000313|EMBL:EJC72440.1}; Flags: Precursor;; TaxID=754522 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii WSM2012.;"
resistance nodulation cell division (RND) drug efflux pump, MFP component
SCNpilot_expt_1000_bf_scaffold_1396_curated_3
Rhizobium etli, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1922..3007
DNA (1086bp) protein (362aa)
Probable protein secretion protein, HlyD family n=1 Tax=Rhizobium etli (strain CIAT 652) RepID=B3Q5S9_RHIE6
putative HlyD family protein secretion protein
Probable protein secretion protein, HlyD family {ECO:0000313|EMBL:ACE94560.1}; TaxID=491916 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium etli (strain CIAT 652).;"
SCNpilot_expt_1000_bf_scaffold_1396_curated_4
unknown

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2967..3614
DNA (648bp) protein (216aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1396_curated_5
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3879..6071
DNA (2193bp) protein (731aa)
ACR family transporter n=1 Tax=Rhizobium leguminosarum RepID=UPI0003662049
ACR family transporter {ECO:0000313|EMBL:AHF87212.1}; TaxID=754523 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii WSM1689.;"
putative efflux transporter protein, acriflavin resistance family
SCNpilot_expt_1000_bf_scaffold_1396_curated_6
unknown

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6049..6207
DNA (159bp) protein (53aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1396_curated_7
Rhizobium sp. CF080, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(6654..8699)
DNA (2046bp) protein (682aa)
Subtilisin-like serine protease n=1 Tax=Rhizobium sp. CF080 RepID=J2RT97_9RHIZ
Peptidase S8 and S53 subtilisin kexin sedolisin {ECO:0000313|EMBL:EUC00047.1}; Flags: Precursor;; TaxID=1144310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF080.;"
subtilisin-like serine protease
SCNpilot_expt_1000_bf_scaffold_1396_curated_8
Rhizobium sp. CF080, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8689..9597)
DNA (909bp) protein (303aa)
V8-like Glu-specific endopeptidase n=1 Tax=Rhizobium sp. CF080 RepID=J3BPR7_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EUC00046.1}; Flags: Precursor;; TaxID=1144310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF080.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1396_curated_9
Roseovarius sp. TM1035, Roseovarius, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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9862..13326
DNA (3465bp) protein (1155aa)
Possible multicopper oxidase n=1 Tax=Roseovarius sp. TM1035 RepID=A6E4W5_9RHOB
Possible multicopper oxidase {ECO:0000313|EMBL:EDM30259.1}; TaxID=391613 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Roseovarius.;" source="Roseovarius sp. TM1035.;"
mnxG; multicopper oxidase rbh
SCNpilot_expt_1000_bf_scaffold_1396_curated_10
unknown

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comp(13702..13818)
DNA (117bp) protein (39aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1396_curated_11
unknown

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comp(14669..14869)
DNA (201bp) protein (67aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1396_curated_12
unknown

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comp(14888..15547)
DNA (660bp) protein (220aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1396_curated_13
Paracoccus sphaerophysae, Paracoccus, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16188..17018
DNA (831bp) protein (277aa)
Possible multicopper oxidase n=1 Tax=Nitrosomonas europaea (strain ATCC 19718 / NBRC 14298) RepID=Q82XF9_NITEU
Uncharacterized protein {ECO:0000313|EMBL:KGJ09521.1}; TaxID=690417 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Paracoccus.;" source="Paracoccus sphaerophysae.;"
mnxG; multicopper oxidase
SCNpilot_expt_1000_bf_scaffold_1396_curated_14
Roseivivax halodurans, Roseivivax, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17029..18882
DNA (1854bp) protein (618aa)
Uncharacterized protein n=1 Tax=Roseovarius sp. TM1035 RepID=A6E4W6_9RHOB
Uncharacterized protein {ECO:0000313|EMBL:ETX12797.1}; TaxID=1449350 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Roseivivax.;" source="Roseivivax halodurans JCM 10272.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1396_curated_15
Roseovarius sp. TM1035, Roseovarius, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18879..19472
DNA (594bp) protein (198aa)
Electron transport protein SCO1/SenC n=1 Tax=Roseovarius sp. TM1035 RepID=A6E4W7_9RHOB
Electron transport protein SCO1/SenC {ECO:0000313|EMBL:EDM30261.1}; TaxID=391613 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Roseovarius.;" source="Roseovarius sp. TM1035.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1396_curated_16
unknown

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20557..20748
DNA (192bp) protein (64aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1396_curated_17
unknown

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comp(20782..20907)
DNA (126bp) protein (42aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1396_curated_18
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23196..24053
DNA (858bp) protein (286aa)
hypothetical protein n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI0003711C81
ABC transporter permease {ECO:0000313|EMBL:KDP71243.1}; TaxID=106592 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens (Sinorhizobium morelense).;"
polar amino acid ABC transporter inner membrane subunit; K02029 polar amino acid transport system permease protein
SCNpilot_expt_1000_bf_scaffold_1396_curated_19
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24050..24814
DNA (765bp) protein (255aa)
ABC transporter; K02028 polar amino acid transport system ATP-binding protein [EC:3.6.3.21]
hypothetical protein n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI00030BF1DA
Putative ABC transporter component {ECO:0000313|EMBL:AHK46695.1}; TaxID=1416753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens OV14.;"
SCNpilot_expt_1000_bf_scaffold_1396_curated_20
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24846..25703
DNA (858bp) protein (286aa)
hypothetical protein n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI00030A4C55
Uncharacterized protein {ECO:0000313|EMBL:KDP71241.1}; TaxID=106592 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens (Sinorhizobium morelense).;"
ABC transporter substrate-binding protein
SCNpilot_expt_1000_bf_scaffold_1396_curated_21
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25725..26507
DNA (783bp) protein (261aa)
hypothetical protein n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI0002E6892B
Putative transcriptional regulator protein, GntR family {ECO:0000313|EMBL:AHK46697.1}; TaxID=1416753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens OV14.;"
GntR family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_1396_curated_22
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26536..27276
DNA (741bp) protein (247aa)
hypothetical protein n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI0003077BDC
Uncharacterized protein {ECO:0000313|EMBL:KDP71239.1}; TaxID=106592 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens (Sinorhizobium morelense).;"
hypothetical protein; K06971
SCNpilot_expt_1000_bf_scaffold_1396_curated_23
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27273..27773
DNA (501bp) protein (167aa)
Ureidoglycolate lyase {ECO:0000256|SAAS:SAAS00181913}; EC=4.3.2.3 {ECO:0000256|SAAS:SAAS00181913};; TaxID=106592 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens (Sinorhizobium morelense).;"
hypothetical protein; K01483 ureidoglycolate hydrolase [EC:3.5.3.19]
hypothetical protein n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI0002F1763F
SCNpilot_expt_1000_bf_scaffold_1396_curated_24
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27770..28726
DNA (957bp) protein (319aa)
putative ribokinase (EC:2.7.1.15); K00852 ribokinase [EC:2.7.1.15]
hypothetical protein n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI00031E432A
Uncharacterized protein {ECO:0000313|EMBL:KDP71237.1}; TaxID=106592 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens (Sinorhizobium morelense).;"
SCNpilot_expt_1000_bf_scaffold_1396_curated_25
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(28762..29640)
DNA (879bp) protein (293aa)
Putative uncharacterized protein n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HWU7_9RHIZ
Putative uncharacterized protein {ECO:0000313|EMBL:EHK54792.1}; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1396_curated_26
Mesorhizobium sp. STM 4661, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29642..30025)
DNA (384bp) protein (128aa)
Putative translation initiation inhibitor, YjgF family protein n=1 Tax=Mesorhizobium sp. STM 4661 RepID=M5F1F2_9RHIZ
Putative translation initiation inhibitor, YjgF family protein {ECO:0000313|EMBL:CCV10166.1}; TaxID=1297570 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. STM 4661.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1396_curated_27
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30039..31100)
DNA (1062bp) protein (354aa)
Class III aminotransferase n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HWU5_9RHIZ
Class III aminotransferase {ECO:0000313|EMBL:EHK54790.1}; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
glutamate-1-semialdehyde aminotransferase
SCNpilot_expt_1000_bf_scaffold_1396_curated_28
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31336..33375)
DNA (2040bp) protein (680aa)
NADH:flavin oxidoreductase/NADH oxidase (EC:1.6.-.-)
NADH:flavin oxidoreductase/NADH oxidase n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HWU4_9RHIZ
NADH:flavin oxidoreductase/NADH oxidase {ECO:0000313|EMBL:EHK54789.1}; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
SCNpilot_expt_1000_bf_scaffold_1396_curated_29
Mesorhizobium sp. STM 4661, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(33432..34919)
DNA (1488bp) protein (496aa)
Gamma-Glu-gamma-aminobutyraldehyde dehydrogenase,NAD(P)H-dependent {ECO:0000313|EMBL:CCV10163.1}; EC=1.2.1.3 {ECO:0000313|EMBL:CCV10163.1};; TaxID=1297570 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. STM 4661.;"
puuC; gamma-glutamyl-gamma-aminobutyraldehyde dehydrogenase (EC:1.2.1.-); K09472 gamma-glutamyl-gamma-aminobutyraldehyde dehydrogenase [EC:1.2.1.-]
Gamma-Glu-gamma-aminobutyraldehyde dehydrogenase,NAD(P)H-dependent n=1 Tax=Mesorhizobium sp. STM 4661 RepID=M5F1U3_9RHIZ
SCNpilot_expt_1000_bf_scaffold_1396_curated_30
Mesorhizobium sp. LNHC229A00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(35108..35911)
DNA (804bp) protein (268aa)
UPI0003CDFA9C related cluster n=1 Tax=unknown RepID=UPI0003CDFA9C
Uncharacterized protein {ECO:0000313|EMBL:ESY90438.1}; TaxID=1287240 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC229A00.;"
transcriptional regulator
Displaying items 1-30 of 88 in total

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