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SCNpilot_expt_1000_bf_scaffold_1396_curated

Search features with annotation key words

Displaying items 61-88 of 88 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_1396_curated_61
Hoeflea sp. BRH_c9, Hoeflea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(69279..70529)
DNA (1251bp) protein (417aa)
hypothetical protein n=1 Tax=Methylosinus sp. LW4 RepID=UPI000367EB7B
Uncharacterized protein {ECO:0000313|EMBL:KJS08459.1}; TaxID=1629712 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Hoeflea.;" source="Hoeflea sp. BRH_c9.;"
FHA domain-containing protein; K11894 type VI secretion system protein ImpI
SCNpilot_expt_1000_bf_scaffold_1396_curated_62
Paracoccus aminophilus, Paracoccus, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

70783..72783
DNA (2001bp) protein (667aa)
Uncharacterized protein n=1 Tax=Paracoccus aminophilus JCM 7686 RepID=S5Y675_PARAH
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGT11150.1}; TaxID=1367847 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Paracoccus.;" source="Paracoccus aminophilus JCM 7686.;"
SCNpilot_expt_1000_bf_scaffold_1396_curated_63
Oxalobacter formigenes, Oxalobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

72814..73572
DNA (759bp) protein (253aa)
hypothetical protein n=1 Tax=Spirosoma spitsbergense RepID=UPI00035DFD44
Uncharacterized protein {ECO:0000313|EMBL:EEO29396.1}; TaxID=556269 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Oxalobacter.;" source="Oxalobacter formigenes OXCC13.;"
PAAR repeat-containing protein
SCNpilot_expt_1000_bf_scaffold_1396_curated_64
unknown

Not on your lists

73592..73882
DNA (291bp) protein (97aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1396_curated_65
unknown

Not on your lists

comp(73809..74762)
DNA (954bp) protein (318aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1396_curated_66
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

74947..75360
DNA (414bp) protein (138aa)
Putrescine importer PuuP n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CLM8_9RHIZ
Putrescine importer PuuP {ECO:0000313|EMBL:EYR82218.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
amino acid permease
SCNpilot_expt_1000_bf_scaffold_1396_curated_67
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(75361..76128)
DNA (768bp) protein (256aa)
DMSO reductase regulatory protein DorX n=1 Tax=Shinella zoogloeoides DD12 RepID=V5C5W5_9RHIZ
DMSO reductase regulatory protein DorX {ECO:0000313|EMBL:EYR82217.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
putative LuxR family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_1396_curated_68
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(76161..76970)
DNA (810bp) protein (270aa)
Uncharacterized protein id=3779679 bin=GWA2_Methylomirabilis_73_35 species=Zea mays genus=Zea taxon_order=Poales taxon_class=Liliopsida phylum=Streptophyta tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated
SCNpilot_expt_1000_bf_scaffold_1396_curated_69
Rhizobium gallicum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

77749..79203
DNA (1455bp) protein (485aa)
metal-binding protein n=1 Tax=Rhizobium mongolense RepID=UPI0003B3646F
CYTH-like CHAD domain-containing protein {ECO:0000313|EMBL:AJD42466.1}; TaxID=1418105 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium gallicum bv. gallicum R602.;"
CHAD domain-containing protein
SCNpilot_expt_1000_bf_scaffold_1396_curated_70
Aurantimonas manganoxydans, Aurantimonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(79215..79781)
DNA (567bp) protein (189aa)
Ribose 1,5-bisphosphate phosphokinase PhnN {ECO:0000256|HAMAP-Rule:MF_00836}; EC=2.7.4.23 {ECO:0000256|HAMAP-Rule:MF_00836};; Ribose 1,5-bisphosphokinase {ECO:0000256|HAMAP-Rule:MF_00836}; TaxID=287752 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Aurantimonadaceae; Aurantimonas.;" source="Manganese-oxidizing bacterium (strain SI85-9A1).;"
phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN; K05774 ribose 1,5-bisphosphokinase [EC:2.7.4.23]
Ribose 1,5-bisphosphate phosphokinase PhnN n=1 Tax=Manganese-oxidizing bacterium (strain SI85-9A1) RepID=Q1YEY5_MOBAS
SCNpilot_expt_1000_bf_scaffold_1396_curated_71
Microvirga lotononidis, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(80971..81804)
DNA (834bp) protein (278aa)
Phosphonate ABC transporter, permease protein PhnE n=1 Tax=Microvirga sp. WSM3557 RepID=I4YSU6_9RHIZ
Phosphonate ABC transporter, permease protein PhnE {ECO:0000313|EMBL:EIM27038.1}; TaxID=864069 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga lotononidis.;"
phosphonate ABC transporter permease; K02042 phosphonate transport system permease protein
SCNpilot_expt_1000_bf_scaffold_1396_curated_72
Microvirga lotononidis, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(81978..82964)
DNA (987bp) protein (329aa)
Phosphonate ABC transporter, periplasmic phosphonate binding protein n=1 Tax=Microvirga sp. WSM3557 RepID=I4YSU5_9RHIZ
Phosphonate ABC transporter, periplasmic phosphonate binding protein {ECO:0000313|EMBL:EIM27037.1}; Flags: Precursor;; TaxID=864069 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga lotononidis.;"
phosphonate ABC transporter periplasmic phosphonate binding protein; K02044 phosphonate transport system substrate-binding protein
SCNpilot_expt_1000_bf_scaffold_1396_curated_73
Microvirga lotononidis, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(82990..83829)
DNA (840bp) protein (280aa)
Phosphonates import ATP-binding protein PhnC {ECO:0000256|HAMAP-Rule:MF_01713}; EC=3.6.3.28 {ECO:0000256|HAMAP-Rule:MF_01713};; TaxID=864069 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga lotononidis.;"
phosphonate ABC transporter ATPase; K02041 phosphonate transport system ATP-binding protein [EC:3.6.3.28]
Phosphonate ABC transporter, ATP-binding protein n=1 Tax=Microvirga sp. WSM3557 RepID=I4YSU4_9RHIZ
SCNpilot_expt_1000_bf_scaffold_1396_curated_74
Microvirga lotononidis, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(83860..84525)
DNA (666bp) protein (222aa)
Phosphonate metabolim protein, transferase hexapeptide repeat family n=1 Tax=Microvirga sp. WSM3557 RepID=I4YSU3_9RHIZ
Phosphonate metabolim protein, transferase hexapeptide repeat family {ECO:0000313|EMBL:EIM27035.1}; TaxID=864069 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga lotononidis.;"
putative acetyltransferase protein
SCNpilot_expt_1000_bf_scaffold_1396_curated_75
Microvirga lotononidis, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(84525..85253)
DNA (729bp) protein (243aa)
hypothetical protein n=1 Tax=Aureimonas ureilytica RepID=UPI0003757900
Phosphonate C-P lyase system protein PhnL {ECO:0000313|EMBL:EIM27034.1}; TaxID=864069 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga lotononidis.;"
phosphonate ABC transporter ATP-binding protein; K05780 putative phosphonate transport system ATP-binding protein
SCNpilot_expt_1000_bf_scaffold_1396_curated_76
Agrobacterium rubi, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(85256..86032)
DNA (777bp) protein (259aa)
Phosphonate C-P lyase system protein PhnK n=1 Tax=Microvirga sp. WSM3557 RepID=I4YSU1_9RHIZ
Carbon-phosphorus lyase complex subunit PhnK {ECO:0000313|EMBL:GAK69642.1}; TaxID=1220582 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Rhizobium rubi NBRC 13261.;"
phnK; phosphonate C-P lyase system protein PhnK; K05781 putative phosphonate transport system ATP-binding protein
SCNpilot_expt_1000_bf_scaffold_1396_curated_77
Microvirga lotononidis, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(86029..86925)
DNA (897bp) protein (299aa)
Putative enzyme of phosphonate metabolism n=1 Tax=Microvirga sp. WSM3557 RepID=I4YSU0_9RHIZ
Putative enzyme of phosphonate metabolism {ECO:0000313|EMBL:EIM27032.1}; TaxID=864069 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga lotononidis.;"
phnJ; Protein phnJ; K06163 PhnJ protein
SCNpilot_expt_1000_bf_scaffold_1396_curated_78
Microvirga lotononidis, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(86922..88022)
DNA (1101bp) protein (367aa)
Putative enzyme of phosphonate metabolism n=1 Tax=Microvirga sp. WSM3557 RepID=I4YST9_9RHIZ
Putative enzyme of phosphonate metabolism {ECO:0000313|EMBL:EIM27031.1}; TaxID=864069 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga lotononidis.;"
phnI; phosphonate metabolism protein PhnI
SCNpilot_expt_1000_bf_scaffold_1396_curated_79
Microvirga lotononidis, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(88026..88631)
DNA (606bp) protein (202aa)
Phosphonate C-P lyase system protein PhnH n=1 Tax=Microvirga sp. WSM3557 RepID=I4YST8_9RHIZ
Phosphonate C-P lyase system protein PhnH {ECO:0000313|EMBL:EIM27030.1}; TaxID=864069 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga lotononidis.;"
phnH; carbon-phosphorus lyase complex subunit; K06165 PhnH protein
SCNpilot_expt_1000_bf_scaffold_1396_curated_80
Microvirga lotononidis, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(88631..89083)
DNA (453bp) protein (151aa)
Phosphonate C-P lyase system protein PhnG n=1 Tax=Microvirga sp. WSM3557 RepID=I4YST7_9RHIZ
Phosphonate C-P lyase system protein PhnG {ECO:0000313|EMBL:EIM27029.1}; TaxID=864069 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga lotononidis.;"
phnG; phosphonate metabolism protein; K06166 PhnG protein
SCNpilot_expt_1000_bf_scaffold_1396_curated_81
Microvirga lotononidis, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

89186..89926
DNA (741bp) protein (247aa)
Phosphonates metabolism transcriptional regulator PhnF n=1 Tax=Microvirga sp. WSM3557 RepID=I4YST6_9RHIZ
Phosphonates metabolism transcriptional regulator PhnF {ECO:0000313|EMBL:EIM27028.1}; TaxID=864069 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga lotononidis.;"
phosphonates metabolism transcriptional regulator PhnF; K02043 GntR family transcriptional regulator, phosphonate transport system regulatory protein
SCNpilot_expt_1000_bf_scaffold_1396_curated_82
Rhizobium sp. CF080, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

90212..90691
DNA (480bp) protein (160aa)
hypothetical protein n=1 Tax=Rhizobium giardinii RepID=UPI00037AD51A
Uncharacterized protein {ECO:0000313|EMBL:EUC00463.1}; Flags: Precursor;; TaxID=1144310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF080.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1396_curated_83
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(90712..91209)
DNA (498bp) protein (166aa)
Free methionine-R-sulfoxide reductase MsrC {ECO:0000313|EMBL:EYR84423.1}; EC=1.8.4.14 {ECO:0000313|EMBL:EYR84423.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
Free methionine-R-sulfoxide reductase MsrC n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CWM8_9RHIZ
putative GAF sensor protein; K07170 GAF domain-containing protein
SCNpilot_expt_1000_bf_scaffold_1396_curated_84
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(91289..91795)
DNA (507bp) protein (169aa)
Putative uncharacterized protein n=1 Tax=Mesorhizobium amorphae CCNWGS0123 RepID=G6Y8I1_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:CDX17822.1}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1396_curated_85
Mesorhizobium sp. L103C105A0, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(92079..92537)
DNA (459bp) protein (153aa)
Transposase IS5 n=2 Tax=Mesorhizobium sp. LNJC394B00 RepID=V7G7A3_9RHIZ
tnp; IS5 family transposase
Transposase IS5 {ECO:0000313|EMBL:ESZ74269.1}; TaxID=1287074 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L103C105A0.;"
SCNpilot_expt_1000_bf_scaffold_1396_curated_86
Rhizobium sp. CF122, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(92603..93181)
DNA (579bp) protein (193aa)
Nicotinamidase-like amidase n=1 Tax=Rhizobium sp. CF122 RepID=J2RCY7_9RHIZ
Nicotinamidase-like amidase {ECO:0000313|EMBL:EJL50552.1}; TaxID=1144312 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF122.;"
isochorismatase hydrolase
SCNpilot_expt_1000_bf_scaffold_1396_curated_87
Agrobacterium rhizogenes, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(93178..94245)
DNA (1068bp) protein (356aa)
spermidine/putrescine ABC transporter ATPase n=1 Tax=Rhizobium leguminosarum RepID=UPI00037A2C97
Spermidine/putrescine ABC transporter ATP-binding protein {ECO:0000313|EMBL:KEA07718.1}; TaxID=359 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium rhizogenes.;"
putative polyamine ABC transporter, ATP-binding protein
SCNpilot_expt_1000_bf_scaffold_1396_curated_88
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(94232..94468)
DNA (237bp) protein (79aa)
Putative polyamine ABC transporter, permease protein n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LZE4_RHITR
putative polyamine ABC transporter, permease protein
Putative polyamine ABC transporter, permease protein {ECO:0000313|EMBL:AGB75514.1}; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
Displaying items 61-88 of 88 in total

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