ggKbase home page

SCNpilot_expt_1000_bf_scaffold_3260_curated

Search features with annotation key words

Displaying 13 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_3260_curated_1
unknown

Not on your lists

comp(73..177)
DNA (105bp) protein (35aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_3260_curated_2
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

500..2260
DNA (1761bp) protein (587aa)
Threonine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00184, ECO:0000256|SAAS:SAAS00106033}; EC=6.1.1.3 {ECO:0000256|HAMAP-Rule:MF_00184, ECO:0000256|SAAS:SAAS00106033};; Threonyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00184}; TaxID=1408223 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. phaseoli CCGM1.;"
thrS; threonyl-tRNA synthetase (EC:6.1.1.3); K01868 threonyl-tRNA synthetase [EC:6.1.1.3]
Threonine--tRNA ligase n=1 Tax=Rhizobium etli CNPAF512 RepID=F2AJ15_RHIET
SCNpilot_expt_1000_bf_scaffold_3260_curated_3
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2446..3282
DNA (837bp) protein (279aa)
Phospholipid/glycerol acyltransferase n=1 Tax=Rhizobium sp. PDO1-076 RepID=H4EZS3_9RHIZ
Putative acyltransferase {ECO:0000313|EMBL:AHK44162.1}; TaxID=1416753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens OV14.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_3260_curated_4
Rhizobium sp. Pop5, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3318..4298)
DNA (981bp) protein (327aa)
hypothetical protein n=1 Tax=Rhizobium sp. 42MFCr.1 RepID=UPI00035DEBAB
Uncharacterized protein {ECO:0000313|EMBL:EJZ21640.1}; TaxID=1223565 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. Pop5.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_3260_curated_5
Rhizobium sp. AP16, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4400..4984
DNA (585bp) protein (195aa)
Nitroreductase n=1 Tax=Rhizobium sp. AP16 RepID=J2L3B4_9RHIZ
Nitroreductase {ECO:0000313|EMBL:EJK81856.1}; TaxID=1144306 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. AP16.;"
nitroreductase
SCNpilot_expt_1000_bf_scaffold_3260_curated_6
Microvirga lotononidis, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5005..5892)
DNA (888bp) protein (296aa)
HpcH/HpaI aldolase; K01644 citrate lyase subunit beta / citryl-CoA lyase [EC:4.1.3.6 4.1.3.34]
Citrate lyase beta subunit n=1 Tax=Microvirga sp. WSM3557 RepID=I4YW76_9RHIZ
Citrate lyase beta subunit {ECO:0000313|EMBL:EIM28218.1}; TaxID=864069 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga lotononidis.;"
SCNpilot_expt_1000_bf_scaffold_3260_curated_7
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6101..7216
DNA (1116bp) protein (372aa)
Uncharacterized protein n=1 Tax=Rhizobium leguminosarum bv. trifolii WSM597 RepID=I9N7A9_RHILT
Uncharacterized protein {ECO:0000313|EMBL:EJB02572.1}; TaxID=754764 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii WSM597.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_3260_curated_8
Rhizobium sp. UR51a, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7217..8392)
DNA (1176bp) protein (392aa)
Permease n=1 Tax=Rhizobium lupini HPC(L) RepID=K5D1B0_RHILU
Membrane protein, putative {ECO:0000313|EMBL:KIV68345.1}; TaxID=1604021 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. UR51a.;"
Permease
SCNpilot_expt_1000_bf_scaffold_3260_curated_9
Candidatus Accumulibacter sp. SK-11, Candidatus Accumulibacter, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8976..9290
DNA (315bp) protein (105aa)
Uncharacterized protein n=1 Tax=Erythrobacter sp. NAP1 RepID=A3WH30_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EXI74902.1}; TaxID=1454000 species="Bacteria; Proteobacteria; Betaproteobacteria; Candidatus Accumulibacter.;" source="Candidatus Accumulibacter sp. SK-11.;"
SCNpilot_expt_1000_bf_scaffold_3260_curated_10
Haloferax lucentense, Haloferax, Haloferacales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

9774..10967
DNA (1194bp) protein (398aa)
Uncharacterized 80.2 kDa protein in the 5'region of gyrA and gyrB n=1 Tax=Haloferax lucentense (strain DSM 14919 / JCM 9276 / NCIMB 13854 / Aa 2.2) RepID=YGY4_HALL2
Uncharacterized 80.2 kDa protein in the 5'region of gyrA and gyrB; ORF 4; TaxID=1230452 species="Archaea; Euryarchaeota; Halobacteria; Haloferacales; Haloferacaceae; Haloferax.;" source="Haloferax lucentense (strain DSM 14919 / JCM 9276 / NCIMB 13854 / Aa; 2.2) (Haloferax alicantei).;"
SCNpilot_expt_1000_bf_scaffold_3260_curated_11
Rhizobium sp. PDO1-076, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10976..11854
DNA (879bp) protein (293aa)
Uncharacterized protein n=1 Tax=Rhizobium sp. PDO1-076 RepID=H4F0F5_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EHS53839.1}; Flags: Precursor;; TaxID=1125979 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. PDO1-076.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_3260_curated_12
Rhizobium grahamii, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12186..12956
DNA (771bp) protein (257aa)
Triosephosphate isomerase {ECO:0000256|HAMAP-Rule:MF_00147, ECO:0000256|RuleBase:RU000517}; Short=TIM {ECO:0000256|HAMAP-Rule:MF_00147};; EC=5.3.1.1 {ECO:0000256|HAMAP-Rule:MF_00147, ECO:0000256|RuleBase:RU000517};; Triose-phosphate isomerase {ECO:0000256|HAMAP-Rule:MF_00147}; TaxID=990285 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium grahamii CCGE 502.;"
tpiA; triosephosphate isomerase; K01803 triosephosphate isomerase (TIM) [EC:5.3.1.1]
Triosephosphate isomerase n=1 Tax=Rhizobium grahamii CCGE 502 RepID=S3HIZ0_9RHIZ
SCNpilot_expt_1000_bf_scaffold_3260_curated_13
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13055..13546
DNA (492bp) protein (164aa)
Preprotein translocase subunit SecG n=2 Tax=Rhizobium radiobacter RepID=M8AVD1_RHIRD
Preprotein translocase subunit SecG {ECO:0000313|EMBL:KDR90084.1}; TaxID=1315272 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium tumefaciens GW4.;"
secG; Protein-export membrane protein secG; K03075 preprotein translocase subunit SecG
Displaying 13 items

View Taxonomy