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SCNpilot_expt_1000_bf_scaffold_951_curated

Search features with annotation key words

Displaying items 1-30 of 62 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_951_curated_1
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3..1181)
DNA (1179bp) protein (393aa)
Uncharacterized protein n=1 Tax=Agrobacterium tumefaciens CCNWGS0286 RepID=G6XRL0_RHIRD
Uncharacterized protein {ECO:0000313|EMBL:EHH07556.1}; TaxID=1082932 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium tumefaciens CCNWGS0286.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_951_curated_2
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1479..1715)
DNA (237bp) protein (79aa)
hypothetical protein n=1 Tax=Agrobacterium sp. 10MFCol1.1 RepID=UPI000377328A
Uncharacterized protein {ECO:0000313|EMBL:CDN91355.1}; TaxID=358 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Rhizobium radiobacter (Agrobacterium tumefaciens) (Agrobacterium; radiobacter).;"
SCNpilot_expt_1000_bf_scaffold_951_curated_3
Rhizobium sp. CF080, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1815..2093)
DNA (279bp) protein (93aa)
Uncharacterized protein n=1 Tax=Rhizobium sp. CF080 RepID=J3BW38_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EUB95589.1}; TaxID=1144310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF080.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_951_curated_4
Xanthobacter autotrophicus, Xanthobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2086..3144)
DNA (1059bp) protein (353aa)
Uncharacterized protein n=1 Tax=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) RepID=A7IKX1_XANP2
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABS68664.1}; TaxID=78245 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Xanthobacter.;" source="Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2).;"
SCNpilot_expt_1000_bf_scaffold_951_curated_5
unknown

Not on your lists

comp(3144..3338)
DNA (195bp) protein (65aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_951_curated_6
Methylobacterium extorquens, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3335..4261)
DNA (927bp) protein (309aa)
Uncharacterized protein n=1 Tax=Methylobacterium extorquens (strain PA1) RepID=A9W3W7_METEP
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABY30273.1}; TaxID=419610 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium extorquens (strain PA1).;"
SCNpilot_expt_1000_bf_scaffold_951_curated_7
Rhizobium sp. AP16, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4254..5699)
DNA (1446bp) protein (482aa)
Replicative DNA helicase n=1 Tax=Rhizobium sp. AP16 RepID=J2WMX2_9RHIZ
Replicative DNA helicase {ECO:0000313|EMBL:EJK83555.1}; TaxID=1144306 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. AP16.;"
replicative DNA helicase
SCNpilot_expt_1000_bf_scaffold_951_curated_8
Mesorhizobium sp. L103C565B0, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5696..5998)
DNA (303bp) protein (101aa)
UPI0003D04B9A related cluster n=1 Tax=unknown RepID=UPI0003D04B9A
Uncharacterized protein {ECO:0000313|EMBL:ESZ50448.1}; TaxID=1287094 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L103C565B0.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_951_curated_9
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5995..6213)
DNA (219bp) protein (73aa)
Uncharacterized protein {ECO:0000313|EMBL:EYR84233.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
SCNpilot_expt_1000_bf_scaffold_951_curated_10
Haematobacter missouriensis, Haematobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6224..6418)
DNA (195bp) protein (65aa)
Uncharacterized protein n=1 Tax=Sinorhizobium meliloti (strain AK83) RepID=F6DX95_SINMK
hypothetical protein
Prophage CP4-57 regulatory protein {ECO:0000313|EMBL:KFI33172.1}; TaxID=366616 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Haematobacter.;" source="Haematobacter missouriensis.;"
SCNpilot_expt_1000_bf_scaffold_951_curated_11
unknown

Not on your lists

comp(6533..7423)
DNA (891bp) protein (297aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_951_curated_12
Sinorhizobium fredii, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7420..8619)
DNA (1200bp) protein (400aa)
Phage integrase-like protein contains catalytic core domain n=1 Tax=Rhizobium sp. (strain NGR234) RepID=C3MF92_RHISN
phage integrase-like protein contains catalytic core domain
Phage integrase-like protein contains catalytic core domain {ECO:0000313|EMBL:ACP23929.1}; TaxID=394 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Rhizobium sp. (strain NGR234).;"
SCNpilot_expt_1000_bf_scaffold_951_curated_13
Sphingomonas sanxanigenens, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9110..9589
DNA (480bp) protein (160aa)
Alkyl hydroperoxide reductase AhpD {ECO:0000256|SAAS:SAAS00088523}; EC=1.11.1.15 {ECO:0000256|SAAS:SAAS00088503};; TaxID=1123269 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sanxanigenens DSM 19645 = NX02.;"
Uncharacterized protein n=1 Tax=Novosphingobium lindaniclasticum LE124 RepID=T0ITQ1_9SPHN
alkylhydroperoxidase
SCNpilot_expt_1000_bf_scaffold_951_curated_14
Rhizobium grahamii, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9678..10166)
DNA (489bp) protein (163aa)
Putative RF2 family protein n=1 Tax=Rhizobium grahamii CCGE 502 RepID=S3HDG5_9RHIZ
Putative RF2 family protein {ECO:0000313|EMBL:EPE96872.1}; TaxID=990285 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium grahamii CCGE 502.;"
BadM/Rrf2 family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_951_curated_15
Sinorhizobium meliloti, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10685..11476)
DNA (792bp) protein (264aa)
ion transporter n=1 Tax=Rhizobium meliloti RepID=UPI000318E83C
putative ionic voltage-gated channel protein
Putative ionic voltage-gated channel protein {ECO:0000313|EMBL:AEH84084.1}; TaxID=707241 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium meliloti (strain SM11).;"
SCNpilot_expt_1000_bf_scaffold_951_curated_16
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11521..12714)
DNA (1194bp) protein (398aa)
Uncharacterized protein n=1 Tax=Rhizobium leguminosarum bv. viciae (strain 3841) RepID=Q1M783_RHIL3
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CAK10649.1}; TaxID=216596 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. viciae (strain 3841).;"
SCNpilot_expt_1000_bf_scaffold_951_curated_17
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12824..14266)
DNA (1443bp) protein (481aa)
NAD(P) transhydrogenase subunit beta {ECO:0000256|PIRNR:PIRNR000204}; EC=1.6.1.2 {ECO:0000256|PIRNR:PIRNR000204};; Nicotinamide nucleotide transhydrogenase subunit beta {ECO:0000256|PIRNR:PIRNR000204}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
pntB; NAD/NADP transhydrogenase subunit beta (EC:1.6.1.2); K00325 NAD(P) transhydrogenase subunit beta [EC:1.6.1.2]
NAD(P) transhydrogenase subunit beta n=2 Tax=Agrobacterium RepID=F0L2B5_AGRSH
SCNpilot_expt_1000_bf_scaffold_951_curated_18
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14283..15857)
DNA (1575bp) protein (525aa)
NAD(P) transhydrogenase subunit alpha {ECO:0000256|PIRNR:PIRNR000203}; EC=1.6.1.2 {ECO:0000256|PIRNR:PIRNR000203};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
pntA; NAD/NADP transhydrogenase, subunit alpha (EC:1.6.1.2); K00324 NAD(P) transhydrogenase subunit alpha [EC:1.6.1.2]
NAD(P) transhydrogenase subunit alpha n=1 Tax=Shinella zoogloeoides DD12 RepID=V5ESH5_9RHIZ
SCNpilot_expt_1000_bf_scaffold_951_curated_19
Sinorhizobium meliloti, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16086..16610
DNA (525bp) protein (175aa)
L-2-amino-thiazoline-4-carboxylic acid hydrolase n=1 Tax=Sinorhizobium meliloti CCNWSX0020 RepID=H0FYE6_RHIML
L-2-amino-thiazoline-4-carboxylic acid hydrolase {ECO:0000313|EMBL:EHK78000.1}; TaxID=1107881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium meliloti CCNWSX0020.;"
atcB; ATC hydrolase
SCNpilot_expt_1000_bf_scaffold_951_curated_20
Sinorhizobium medicae, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16751..17893
DNA (1143bp) protein (381aa)
HPP family protein n=1 Tax=Sinorhizobium medicae (strain WSM419) RepID=A6UKF5_SINMW
hypothetical protein; K07168 CBS domain-containing membrane protein
HPP family protein {ECO:0000313|EMBL:ABR64135.1}; TaxID=366394 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium medicae (strain WSM419) (Ensifer medicae).;"
SCNpilot_expt_1000_bf_scaffold_951_curated_21
Sinorhizobium meliloti, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17913..19208)
DNA (1296bp) protein (432aa)
sugar isomerase (EC:5.3.1.-)
Sugar isomerase n=2 Tax=Rhizobium meliloti RepID=K0P3C8_RHIML
L-rhamnose catabolism isomerase {ECO:0000313|EMBL:EHK76424.1}; TaxID=1107881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium meliloti CCNWSX0020.;"
SCNpilot_expt_1000_bf_scaffold_951_curated_22
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19260..19673)
DNA (414bp) protein (138aa)
Short chain dehydrogenase RhaD {ECO:0000313|EMBL:EYR82047.1}; EC=1.-.-.- {ECO:0000313|EMBL:EYR82047.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
Short chain dehydrogenase RhaD n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CM21_9RHIZ
rhaD; short chain dehydrogenase
SCNpilot_expt_1000_bf_scaffold_951_curated_23
unknown

Not on your lists

19749..19892
DNA (144bp) protein (48aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_951_curated_24
Rhizobium freirei, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20535..21473
DNA (939bp) protein (313aa)
Uncharacterized protein n=1 Tax=Rhizobium freirei PRF 81 RepID=N6UWQ8_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:ENN85181.1}; TaxID=363754 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium freirei PRF 81.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_951_curated_25
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21957..22337
DNA (381bp) protein (127aa)
Transcriptional regulator, DeoR family n=1 Tax=Sinorhizobium medicae (strain WSM419) RepID=A6U603_SINMW
Transcriptional regulator, DeoR family {ECO:0000313|EMBL:AHK43379.1}; TaxID=1416753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens OV14.;"
DeoR family transcriptional regulator; K03477 DeoR family transcriptional regulator, ulaG and ulaABCDEF operon transcriptional repressor
SCNpilot_expt_1000_bf_scaffold_951_curated_26
Sinorhizobium meliloti, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22371..23741
DNA (1371bp) protein (457aa)
carbohydrate kinase n=1 Tax=Rhizobium meliloti RepID=UPI0002DC226D
Carbohydrate kinase, FGGY
Carbohydrate kinase, FGGY {ECO:0000313|EMBL:AEG03184.1}; TaxID=698936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium meliloti (strain BL225C).;"
SCNpilot_expt_1000_bf_scaffold_951_curated_27
unknown

Not on your lists

comp(23885..23998)
DNA (114bp) protein (38aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_951_curated_28
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24420..26033
DNA (1614bp) protein (538aa)
Methyl-accepting chemotaxis protein n=2 Tax=Rhizobium/Agrobacterium group RepID=B9J942_AGRRK
mcpE; methyl-accepting chemotaxis protein; K03406 methyl-accepting chemotaxis protein
Methyl-accepting chemotaxis protein {ECO:0000313|EMBL:ACM25444.1}; TaxID=311403 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium radiobacter (strain K84 / ATCC BAA-868).;"
SCNpilot_expt_1000_bf_scaffold_951_curated_29
unknown

Not on your lists

26030..26131
DNA (102bp) protein (34aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_951_curated_30
Rhizobium sp. CF080, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26168..26464
DNA (297bp) protein (99aa)
Anti-anti-sigma regulatory factor (Antagonist of anti-sigma factor) n=1 Tax=Rhizobium sp. CF080 RepID=J3CQT0_9RHIZ
Sulfate transporter/antisigma-factor antagonist STAS {ECO:0000313|EMBL:EUC00329.1}; TaxID=1144310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF080.;"
hypothetical protein; K03409 chemotaxis protein CheX
Displaying items 1-30 of 62 in total

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