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SCNpilot_expt_1000_bf_scaffold_1601_curated

Search features with annotation key words

Displaying items 1-30 of 39 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_1601_curated_1
Sinorhizobium fredii, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2..664
DNA (663bp) protein (221aa)
Uncharacterized protein n=1 Tax=Rhizobium fredii (strain HH103) RepID=G9AA61_RHIFH
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCE94652.1}; TaxID=1117943 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Rhizobium fredii (strain HH103) (Sinorhizobium fredii).;"
SCNpilot_expt_1000_bf_scaffold_1601_curated_2
Sinorhizobium fredii, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

664..2679
DNA (2016bp) protein (672aa)
Uncharacterized protein n=1 Tax=Rhizobium fredii (strain HH103) RepID=G9AA62_RHIFH
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCE94653.1}; TaxID=1117943 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Rhizobium fredii (strain HH103) (Sinorhizobium fredii).;"
SCNpilot_expt_1000_bf_scaffold_1601_curated_3
unknown

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comp(2653..2868)
DNA (216bp) protein (72aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1601_curated_4
unknown

Not on your lists

2995..3246
DNA (252bp) protein (84aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1601_curated_5
unknown

Not on your lists

3264..3374
DNA (111bp) protein (37aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1601_curated_6
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3643..3885)
DNA (243bp) protein (81aa)
DNA-binding protein n=1 Tax=Rhizobium meliloti RepID=UPI00036772CA
XRE family transcriptional regulator
Putative transcriptional regulator {ECO:0000313|EMBL:EJC71259.1}; TaxID=755176 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. viciae WSM1455.;"
SCNpilot_expt_1000_bf_scaffold_1601_curated_7
Rhizobium sp. AP16, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3975..4322
DNA (348bp) protein (116aa)
hypothetical protein n=1 Tax=Agrobacterium sp. 10MFCol1.1 RepID=UPI00035ED006
Uncharacterized protein {ECO:0000313|EMBL:EJK79457.1}; TaxID=1144306 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. AP16.;"
SCNpilot_expt_1000_bf_scaffold_1601_curated_8
unknown

Not on your lists

4373..5011
DNA (639bp) protein (213aa)
hypothetical protein n=1 Tax=Agrobacterium sp. 10MFCol1.1 RepID=UPI00035DCE46
SCNpilot_expt_1000_bf_scaffold_1601_curated_9
Rhizobium sp. H41, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5008..5649
DNA (642bp) protein (214aa)
Uncharacterized protein {ECO:0000313|EMBL:KGE80388.1}; TaxID=1510041 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. H41.;"
SCNpilot_expt_1000_bf_scaffold_1601_curated_10
unknown

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5646..5864
DNA (219bp) protein (73aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1601_curated_11
unknown

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5857..6063
DNA (207bp) protein (69aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1601_curated_12
Mesorhizobium sp. L2C067A000, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6092..6541
DNA (450bp) protein (150aa)
UPI0003CDD1FC related cluster n=1 Tax=unknown RepID=UPI0003CDD1FC
Uncharacterized protein {ECO:0000313|EMBL:ESZ37546.1}; TaxID=1287106 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L2C067A000.;"
SCNpilot_expt_1000_bf_scaffold_1601_curated_13
Rhizobium etli, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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6686..6922
DNA (237bp) protein (79aa)
Hypothetical conserved protein n=1 Tax=Rhizobium etli (strain CIAT 652) RepID=B3PUH3_RHIE6
hypothetical protein
Hypothetical conserved protein {ECO:0000313|EMBL:ACE92054.1}; TaxID=491916 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium etli (strain CIAT 652).;"
SCNpilot_expt_1000_bf_scaffold_1601_curated_14
Rhizobium gallicum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7404..7667)
DNA (264bp) protein (88aa)
hypothetical protein n=1 Tax=Rhizobium mongolense RepID=UPI0003B66D02
Uncharacterized protein {ECO:0000313|EMBL:AJD45793.1}; TaxID=1418105 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium gallicum bv. gallicum R602.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1601_curated_15
unknown

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8287..8583
DNA (297bp) protein (99aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1601_curated_16
unknown

Not on your lists

8815..9087
DNA (273bp) protein (91aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1601_curated_17
Methylobacterium mesophilicum, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9108..9461)
DNA (354bp) protein (118aa)
hypothetical protein n=1 Tax=Methylobacterium sp. 285MFTsu5.1 RepID=UPI0003812518
Uncharacterized protein {ECO:0000313|EMBL:EMS41032.1}; TaxID=908290 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium mesophilicum SR1.6/6.;"
signal transduction histidine kinase
SCNpilot_expt_1000_bf_scaffold_1601_curated_18
Neorhizobium galegae, Neorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10974..11189)
DNA (216bp) protein (72aa)
DNA gyrase inhibitor YacG n=1 Tax=Agrobacterium tumefaciens str. Cherry 2E-2-2 RepID=M8AGD2_RHIRD
DNA gyrase inhibitor YacG {ECO:0000256|HAMAP-Rule:MF_00649, ECO:0000256|SAAS:SAAS00085446}; TaxID=399 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Neorhizobium.;" source="Rhizobium galegae.;"
hypothetical protein; K09862 hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1601_curated_19
Rhizobium freirei, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11186..11803)
DNA (618bp) protein (206aa)
Maf-like protein RHSP_44294 n=1 Tax=Rhizobium freirei PRF 81 RepID=N6UBI7_9RHIZ
Maf-like protein RHSP_44294 {ECO:0000256|HAMAP-Rule:MF_00528}; TaxID=363754 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium freirei PRF 81.;"
maf; Maf-like protein; K06287 septum formation protein
SCNpilot_expt_1000_bf_scaffold_1601_curated_20
Agrobacterium rhizogenes, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11835..12053)
DNA (219bp) protein (73aa)
Translation initiation factor IF-1 n=4 Tax=Rhizobium/Agrobacterium group RepID=B9JB05_AGRRK
infA; translation initiation factor IF-1
Translation initiation factor IF-1 {ECO:0000256|HAMAP-Rule:MF_00075}; TaxID=359 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium rhizogenes.;"
SCNpilot_expt_1000_bf_scaffold_1601_curated_21
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12195..12587)
DNA (393bp) protein (131aa)
arsenate reductase (EC:1.20.4.1)
phosphotyrosine protein phosphatase n=1 Tax=Rhizobium mongolense RepID=UPI0003B32B2B
Putative low molecular weight tyrosine phosphatase protein {ECO:0000313|EMBL:AHK43369.1}; TaxID=1416753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens OV14.;"
SCNpilot_expt_1000_bf_scaffold_1601_curated_22
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12673..13149)
DNA (477bp) protein (159aa)
UPF0262 protein Rleg2_0240 n=2 Tax=Rhizobium leguminosarum bv. trifolii RepID=Y240_RHILW
hypothetical protein
UPF0262 protein Rleg2_0240 {ECO:0000255|HAMAP-Rule:MF_00678}; TaxID=395492 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii (strain WSM2304).;"
SCNpilot_expt_1000_bf_scaffold_1601_curated_23
Rhizobium sp. H41, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13154..14452)
DNA (1299bp) protein (433aa)
Histidinol dehydrogenase {ECO:0000256|HAMAP-Rule:MF_01024, ECO:0000256|PIRNR:PIRNR000099}; Short=HDH {ECO:0000256|HAMAP-Rule:MF_01024, ECO:0000256|PIRNR:PIRNR000099};; EC=1.1.1.23 {ECO:0000256|HAMAP-Rule:MF_01024, ECO:0000256|PIRNR:PIRNR000099};; TaxID=1510041 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. H41.;"
hisD; histidinol dehydrogenase (HDH) (EC:1.1.1.23)
Histidinol dehydrogenase n=1 Tax=Rhizobium sp. IRBG74 RepID=U4Q145_9RHIZ
SCNpilot_expt_1000_bf_scaffold_1601_curated_24
Rhizobium mesoamericanum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14503..14943)
DNA (441bp) protein (147aa)
Uncharacterized protein n=1 Tax=Rhizobium mesoamericanum STM3625 RepID=K0PSK0_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:CCM74370.1}; TaxID=1211777 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium mesoamericanum STM3625.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1601_curated_25
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15108..16400)
DNA (1293bp) protein (431aa)
UDP-N-acetylglucosamine 1-carboxyvinyltransferase {ECO:0000256|HAMAP-Rule:MF_00111, ECO:0000256|SAAS:SAAS00085344}; EC=2.5.1.7 {ECO:0000256|HAMAP-Rule:MF_00111, ECO:0000256|SAAS:SAAS00085344};; Enoylpyruvate transferase {ECO:0000256|HAMAP-Rule:MF_00111}; UDP-N-acetylglucosamine enolpyruvyl transferase {ECO:0000256|HAMAP-Rule:MF_00111}; TaxID=1281779 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens compl
murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase (Enoylpyruvate transferase 1) (UDP-N-acetylglucosamine enolpyruvyl transferase 1) (EPT 1) (EC:2.5.1.7)
UDP-N-acetylglucosamine 1-carboxyvinyltransferase n=2 Tax=Rhizobium radiobacter RepID=M8B9Z2_RHIRD
SCNpilot_expt_1000_bf_scaffold_1601_curated_26
Nitratireductor pacificus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17245..18075
DNA (831bp) protein (277aa)
esterase n=1 Tax=Hoeflea sp. 108 RepID=UPI000379BEA9
Uncharacterized protein {ECO:0000313|EMBL:EKF19097.1}; TaxID=391937 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor pacificus pht-3B.;"
esterase/lipase
SCNpilot_expt_1000_bf_scaffold_1601_curated_27
unknown

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comp(18129..18452)
DNA (324bp) protein (108aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1601_curated_28
Agrobacterium sp. ATCC 31749, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18628..19680
DNA (1053bp) protein (351aa)
Dipeptidase n=1 Tax=Agrobacterium sp. ATCC 31749 RepID=F5JHR0_9RHIZ
Dipeptidase {ECO:0000313|EMBL:EGL62618.1}; TaxID=82789 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium sp. ATCC 31749.;"
dipeptidase rbh
SCNpilot_expt_1000_bf_scaffold_1601_curated_29
Agrobacterium vitis, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19791..20822
DNA (1032bp) protein (344aa)
Glycosyltransferase protein n=1 Tax=Agrobacterium vitis (strain S4 / ATCC BAA-846) RepID=B9JX72_AGRVS
glycosyltransferase
Glycosyltransferase protein {ECO:0000313|EMBL:ACM36850.1}; TaxID=311402 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium vitis (strain S4 / ATCC BAA-846) (Rhizobium vitis; (strain S4)).;"
SCNpilot_expt_1000_bf_scaffold_1601_curated_30
Hoeflea sp. BAL378, Hoeflea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20919..22082)
DNA (1164bp) protein (388aa)
hypothetical protein n=1 Tax=Rhizobium giardinii RepID=UPI00036E315D
Uncharacterized protein {ECO:0000313|EMBL:KGF70489.1}; TaxID=1547437 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Hoeflea.;" source="Hoeflea sp. BAL378.;"
glycosyltransferase
Displaying items 1-30 of 39 in total

View Taxonomy