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SCNpilot_expt_1000_bf_scaffold_6970_curated

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Displaying 15 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_6970_curated_1
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3..716)
DNA (714bp) protein (238aa)
Alpha/beta superfamily hydrolase n=1 Tax=Rhizobium leguminosarum bv. trifolii WSM597 RepID=J0H9Z6_RHILT
Uncharacterized protein {ECO:0000313|EMBL:KAJ32893.1}; TaxID=358 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Rhizobium radiobacter (Agrobacterium tumefaciens) (Agrobacterium; radiobacter).;"
putative S15 family serine protease
SCNpilot_expt_1000_bf_scaffold_6970_curated_2
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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857..1756
DNA (900bp) protein (300aa)
Transcriptional regulator, LysR family {ECO:0000313|EMBL:ACI56198.1}; EC=4.2.1.1 {ECO:0000313|EMBL:ACI56198.1};; TaxID=395492 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii (strain WSM2304).;"
Transcriptional regulator, LysR family n=1 Tax=Rhizobium leguminosarum bv. trifolii (strain WSM2304) RepID=B5ZZF0_RHILW
LysR family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_6970_curated_3
Paracoccus versutus, Paracoccus, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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1758..2039
DNA (282bp) protein (94aa)
TRAP transporter, DctM subunit n=1 Tax=Bradyrhizobium sp. DFCI-1 RepID=U1HMJ2_9BRAD
C4-dicarboxylate ABC transporter permease {ECO:0000313|EMBL:KGJ01416.1}; Flags: Fragment;; TaxID=34007 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Paracoccus.;" source="Paracoccus versutus (Thiobacillus versutus).;"
TRAP dicarboxylate transporter subunit DctM
SCNpilot_expt_1000_bf_scaffold_6970_curated_4
Agrobacterium albertimagni, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2679..2882)
DNA (204bp) protein (68aa)
Bile acid:sodium symporter n=1 Tax=Agrobacterium albertimagni AOL15 RepID=K2QXZ0_9RHIZ
Bile acid:sodium symporter {ECO:0000313|EMBL:EKF60342.1}; TaxID=1156935 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium albertimagni AOL15.;"
Na+/bile acid cotransporter protein; K14347 solute carrier family 10 (sodium/bile acid cotransporter), member 7
SCNpilot_expt_1000_bf_scaffold_6970_curated_5
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3011..4354)
DNA (1344bp) protein (448aa)
Histidinol dehydrogenase {ECO:0000256|HAMAP-Rule:MF_01024, ECO:0000256|PIRNR:PIRNR000099}; Short=HDH {ECO:0000256|HAMAP-Rule:MF_01024, ECO:0000256|PIRNR:PIRNR000099};; EC=1.1.1.23 {ECO:0000256|HAMAP-Rule:MF_01024, ECO:0000256|PIRNR:PIRNR000099};; TaxID=754522 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii WSM2012.;"
hisD; histidinol dehydrogenase (EC:1.1.1.23); K00013 histidinol dehydrogenase [EC:1.1.1.23]
Histidinol dehydrogenase n=1 Tax=Rhizobium leguminosarum bv. trifolii WSM2012 RepID=J0C7I4_RHILT
SCNpilot_expt_1000_bf_scaffold_6970_curated_6
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4366..4776)
DNA (411bp) protein (137aa)
FAD dependent oxidoreductase; K00285 D-amino-acid dehydrogenase [EC:1.4.99.1]
Glycine/D-amino acid oxidase, deaminating n=1 Tax=Rhizobium leguminosarum bv. trifolii WSM2012 RepID=J0KBS6_RHILT
Glycine/D-amino acid oxidase, deaminating {ECO:0000313|EMBL:EJC74979.1}; TaxID=754522 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii WSM2012.;"
SCNpilot_expt_1000_bf_scaffold_6970_curated_7
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4766..5614)
DNA (849bp) protein (283aa)
FAD dependent oxidoreductase; K00285 D-amino-acid dehydrogenase [EC:1.4.99.1]
Glycine/D-amino acid oxidase, deaminating n=1 Tax=Rhizobium leguminosarum bv. trifolii WSM2012 RepID=J0KBS6_RHILT
Glycine/D-amino acid oxidase, deaminating {ECO:0000313|EMBL:EJC74979.1}; TaxID=754522 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii WSM2012.;"
SCNpilot_expt_1000_bf_scaffold_6970_curated_8
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5618..7198)
DNA (1581bp) protein (527aa)
Gamma-glutamyltransferase n=1 Tax=Rhizobium leguminosarum bv. trifolii WSM2012 RepID=J0VQ91_RHILT
Gamma-glutamyltransferase {ECO:0000313|EMBL:EJC74978.1}; TaxID=754522 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii WSM2012.;"
gamma-glutamyltranspeptidase
SCNpilot_expt_1000_bf_scaffold_6970_curated_9
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7195..7491)
DNA (297bp) protein (99aa)
ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component n=1 Tax=Rhizobium leguminosarum bv. trifolii WSM2012 RepID=J0BX66_RHILT
ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component {ECO:0000313|EMBL:EJC74977.1}; TaxID=754522 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii WSM2012.;"
ABC transporter; K02049 NitT/TauT family transport system ATP-binding protein
SCNpilot_expt_1000_bf_scaffold_6970_curated_10
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(8878..9606)
DNA (729bp) protein (243aa)
Transcriptional regulator n=1 Tax=Rhizobium leguminosarum bv. trifolii WSM2012 RepID=J0C7I0_RHILT
Transcriptional regulator {ECO:0000313|EMBL:EJC74975.1}; TaxID=754522 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii WSM2012.;"
GntR family transcriptional regulator; K05836 GntR family transcriptional regulator, histidine utilization repressor
SCNpilot_expt_1000_bf_scaffold_6970_curated_11
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(9656..10651)
DNA (996bp) protein (332aa)
ABC-type nitrate/sulfonate/bicarbonate transport system, periplasmic component n=1 Tax=Rhizobium leguminosarum bv. trifolii WSM2012 RepID=J0KBR9_RHILT
ABC-type nitrate/sulfonate/bicarbonate transport system, periplasmic component {ECO:0000313|EMBL:EJC74974.1}; Flags: Precursor;; TaxID=754522 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii WSM2012.;"
NMT1/THI5 like domain-containing protein; K02051 NitT/TauT family transport system substrate-binding protein
SCNpilot_expt_1000_bf_scaffold_6970_curated_12
unknown

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11060..11980
DNA (921bp) protein (307aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_6970_curated_13
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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12921..13724
DNA (804bp) protein (268aa)
Transcriptional regulator, LuxR family n=1 Tax=Rhizobium leguminosarum bv. trifolii (strain WSM2304) RepID=B6A0U1_RHILW
LuxR family transcriptional regulator
Transcriptional regulator, LuxR family {ECO:0000313|EMBL:ACI58225.1}; TaxID=395492 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii (strain WSM2304).;"
SCNpilot_expt_1000_bf_scaffold_6970_curated_14
Ochrobactrum anthropi, Ochrobactrum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(13890..14816)
DNA (927bp) protein (309aa)
alpha/beta hydrolase n=1 Tax=Ochrobactrum anthropi RepID=UPI0002888E9A
Alpha/beta hydrolase {ECO:0000313|EMBL:EXL03345.1}; TaxID=529 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Ochrobactrum.;" source="Ochrobactrum anthropi.;"
alpha/beta superfamily hydrolase; K06889
SCNpilot_expt_1000_bf_scaffold_6970_curated_15
Ochrobactrum anthropi, Ochrobactrum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(14876..15454)
DNA (579bp) protein (193aa)
NAD-dependent dehydratase n=1 Tax=Pseudochrobactrum sp. AO18b RepID=UPI0003A8E59F
NAD-dependent dehydratase {ECO:0000313|EMBL:EXL03344.1}; TaxID=529 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Ochrobactrum.;" source="Ochrobactrum anthropi.;"
NAD-dependent epimerase/dehydratase
Displaying 15 items

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