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SCNpilot_expt_1000_bf_scaffold_6335_curated_6

Organism: scnpilot_dereplicated_Rhizobiales_12

near complete RP 44 / 55 MC: 2 BSCG 46 / 51 MC: 5 ASCG 10 / 38 MC: 2
Location: 5235..6005

Top 3 Functional Annotations

Value Algorithm Source
L-arabinose 1-dehydrogenase {ECO:0000313|EMBL:EYR78800.1}; EC=1.1.1.120 {ECO:0000313|EMBL:EYR78800.1};; EC=1.1.1.46 {ECO:0000313|EMBL:EYR78800.1};; EC=1.1.1.48 {ECO:0000313|EMBL:EYR78800.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 92.2
  • Coverage: 256.0
  • Bit_score: 493
  • Evalue 2.20e-136
gal; putative D-galactose 1-dehydrogenase protein; K00035 D-galactose 1-dehydrogenase [EC:1.1.1.48] similarity KEGG
DB: KEGG
  • Identity: 86.7
  • Coverage: 256.0
  • Bit_score: 463
  • Evalue 3.30e-128
L-arabinose 1-dehydrogenase n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CYZ2_9RHIZ similarity UNIREF
DB: UNIREF100
  • Identity: 92.2
  • Coverage: 256.0
  • Bit_score: 493
  • Evalue 1.60e-136

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Taxonomy

Shinella sp. DD12 → Shinella → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 771
ATGATCGCCGCCGTGCCGGCCATCGATGCCGTGTCGCTCTGCATGCCGCCGCAGTATCGCTACGAGGCCGCCGAGAAGGCGCTGTCGGCTGGCAAGCACGTCTTCCTGGAAAAGCCGCCGGGCGCGACGCTCTCCGAGGTCGCCGACCTCGAGGCGCTCGCCGCCTCCAAGGGGCTTTCGCTCTTTGCAAGCTGGCACTCGCGCTATGCGCCGGCCGTCGAGGCCGCCAGGGAATTCCTTGCCGGCACGACCATCCGCTCGATGCGCGTGATCTGGAAGGAAGACGTGCGCCACTGGCACCCGAATCAGGAATGGATCTGGCAGGCCGGCGGCCTCGGCGTGTTCGACCCGGGCATCAACGCGCTCTCCATCGTGACGCACATCCTGCCCCGCCCCGTCTTCATCACCGCCGCGACGCTGGAGTTCCCGGAAAACCGCGACGCCCCCATCGCCGCCTCGATGACATTCTCGGACGCCAAGGGGCTCGATCTTGCCGCCGAATTCGACTGGCGCCAGACGGGCAAGCAGAGCTGGGACATCGTGGCGAAGACGGATGCCGGCGAGATGGTGCTGTCGGAAGGCGGCGCCAAGCTTTCCATCGACGGCAAGCTGGTGCACGAGGAGCCGGAGCAGGAATACCCGATGCTCTACAGGCGCTTCGCCGAGATCATCAGGGCCGGCAGGTCCGACGTCGACCTCGCGCCGCTCCGCCACGTCGCGGATGCCTTCATGCTCGGCCGGCGGAAGTTCGTCGATTCGTTTTACGATTGA
PROTEIN sequence
Length: 257
MIAAVPAIDAVSLCMPPQYRYEAAEKALSAGKHVFLEKPPGATLSEVADLEALAASKGLSLFASWHSRYAPAVEAAREFLAGTTIRSMRVIWKEDVRHWHPNQEWIWQAGGLGVFDPGINALSIVTHILPRPVFITAATLEFPENRDAPIAASMTFSDAKGLDLAAEFDWRQTGKQSWDIVAKTDAGEMVLSEGGAKLSIDGKLVHEEPEQEYPMLYRRFAEIIRAGRSDVDLAPLRHVADAFMLGRRKFVDSFYD*