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SCNpilot_expt_1000_bf_scaffold_6335_curated

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Displaying 9 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_6335_curated_1
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(35..724)
DNA (690bp) protein (230aa)
Beta-etherase LigE n=1 Tax=Shinella zoogloeoides DD12 RepID=V5ERS9_9RHIZ
Beta-etherase LigE {ECO:0000313|EMBL:EYR78789.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
putative lignin beta-ether hydrolase
SCNpilot_expt_1000_bf_scaffold_6335_curated_2
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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858..1379
DNA (522bp) protein (174aa)
DinB family protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5C9Y3_9RHIZ
DinB family protein {ECO:0000313|EMBL:EYR78790.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_6335_curated_3
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1495..1782
DNA (288bp) protein (96aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CPS6_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EYR78791.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
SCNpilot_expt_1000_bf_scaffold_6335_curated_4
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2011..3036
DNA (1026bp) protein (342aa)
Diguanylate cyclase n=1 Tax=Shinella zoogloeoides DD12 RepID=V5C6H2_9RHIZ
Diguanylate cyclase {ECO:0000313|EMBL:EYR78792.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
diguanylate cyclase
SCNpilot_expt_1000_bf_scaffold_6335_curated_5
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3078..4961
DNA (1884bp) protein (628aa)
putative ABC transporter, ATP-binding protein with duplicated ATPase domains (EC:3.6.3.-)
ABC transporter permease n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CMA4_9RHIZ
ABC transporter permease {ECO:0000313|EMBL:EYR78793.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
SCNpilot_expt_1000_bf_scaffold_6335_curated_6
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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5235..6005
DNA (771bp) protein (257aa)
L-arabinose 1-dehydrogenase {ECO:0000313|EMBL:EYR78800.1}; EC=1.1.1.120 {ECO:0000313|EMBL:EYR78800.1};; EC=1.1.1.46 {ECO:0000313|EMBL:EYR78800.1};; EC=1.1.1.48 {ECO:0000313|EMBL:EYR78800.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
gal; putative D-galactose 1-dehydrogenase protein; K00035 D-galactose 1-dehydrogenase [EC:1.1.1.48]
L-arabinose 1-dehydrogenase n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CYZ2_9RHIZ
SCNpilot_expt_1000_bf_scaffold_6335_curated_7
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(6173..6622)
DNA (450bp) protein (150aa)
DNA polymerase III, chi subunit protein {ECO:0000313|EMBL:EYR78803.1}; EC=2.7.7.7 {ECO:0000313|EMBL:EYR78803.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
DNA polymerase III subunit chi (EC:2.7.7.7); K02339 DNA polymerase III subunit chi [EC:2.7.7.7]
DNA polymerase III, chi subunit protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D3B6_9RHIZ
SCNpilot_expt_1000_bf_scaffold_6335_curated_8
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(6630..8126)
DNA (1497bp) protein (499aa)
Probable cytosol aminopeptidase n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LKR4_RHITR
cytosol aminopeptidase (leucine aminopeptidase)
Probable cytosol aminopeptidase {ECO:0000256|HAMAP-Rule:MF_00181}; Leucine aminopeptidase {ECO:0000256|HAMAP-Rule:MF_00181}; Leucyl aminopeptidase {ECO:0000256|HAMAP-Rule:MF_00181}; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
SCNpilot_expt_1000_bf_scaffold_6335_curated_9
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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8331..9113
DNA (783bp) protein (261aa)
Lipid A 4'-phosphatase n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LKM9_RHITR
lpxF; lipid A 4'-phosphatase
Lipid A 4'-phosphatase {ECO:0000313|EMBL:AGB70644.1}; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
Displaying 9 items

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