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SCNpilot_expt_1000_bf_scaffold_2955_curated_8

Organism: scnpilot_dereplicated_Rhizobiales_12

near complete RP 44 / 55 MC: 2 BSCG 46 / 51 MC: 5 ASCG 10 / 38 MC: 2
Location: comp(5862..6269)

Top 3 Functional Annotations

Value Algorithm Source
DNA-directed RNA polymerase subunit omega {ECO:0000256|HAMAP-Rule:MF_00366, ECO:0000256|SAAS:SAAS00054253}; Short=RNAP omega subunit {ECO:0000256|HAMAP-Rule:MF_00366};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_00366, ECO:0000256|SAAS:SAAS00094401};; RNA polymerase omega subunit {ECO:0000256|HAMAP-Rule:MF_00366}; Transcriptase subunit omega {ECO:0000256|HAMAP-Rule:MF_00366}; TaxID=1532558 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium. similarity UNIPROT
DB: UniProtKB
  • Identity: 88.9
  • Coverage: 135.0
  • Bit_score: 237
  • Evalue 1.20e-59
rpoZ; DNA-directed RNA polymerase subunit omega (EC:2.7.7.6); K03060 DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] similarity KEGG
DB: KEGG
  • Identity: 89.6
  • Coverage: 135.0
  • Bit_score: 235
  • Evalue 7.70e-60
DNA-directed RNA polymerase subunit omega n=1 Tax=Rhizobium sp. CF122 RepID=J2ILS0_9RHIZ similarity UNIREF
DB: UNIREF100
  • Identity: 89.6
  • Coverage: 135.0
  • Bit_score: 236
  • Evalue 1.90e-59

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Taxonomy

Rhizobium sp. YS-1r → Rhizobium → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 408
ATGGCCCGCGTCACGGTAGAAGACTGCATTGATAAGGTGGACAATCGTTTCGAGCTGGTTCTGCTCGCGAGCCATCGCGCCCGCCAGATCTCGCAGGGCGCCTCCATCACCATCGACCGCGACAACGACAAGAACCCCGTCGTCGCGCTTCGCGAAATCGCCGACGAGACGCTGTCGCCCGACGATCTGAAGGAAGACCTGATCCATTCGCTGCAGAAGCATGTCGAGGTCGACGAGCCCGAACACGATCTGGCCTCGGCCATCGGCGTTTCCGGCGCGGCCGCGTCCGAAGCCGGCGAGGAGGAAGAGGATCTGCCCGAGACCATCACCTTCGACCAGATGTCGGAAGAAGAACTGCTGGCCGGCATCGAAGGCCTGGTGCCGCCGGAAAAGAGCGACGATTATTGA
PROTEIN sequence
Length: 136
MARVTVEDCIDKVDNRFELVLLASHRARQISQGASITIDRDNDKNPVVALREIADETLSPDDLKEDLIHSLQKHVEVDEPEHDLASAIGVSGAAASEAGEEEEDLPETITFDQMSEEELLAGIEGLVPPEKSDDY*