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SCNpilot_expt_1000_bf_scaffold_2955_curated

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Displaying 11 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_2955_curated_1
Rhizobium sp. YS-1r, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1..570)
DNA (570bp) protein (190aa)
GTPase Era n=2 Tax=Rhizobium/Agrobacterium group RepID=B9JC74_AGRRK
GTPase Era {ECO:0000256|HAMAP-Rule:MF_00367, ECO:0000256|SAAS:SAAS00085723}; TaxID=1532558 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. YS-1r.;"
era; GTP-binding protein Era; K03595 GTP-binding protein Era
SCNpilot_expt_1000_bf_scaffold_2955_curated_2
Rhizobium gallicum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(543..1262)
DNA (720bp) protein (240aa)
Ribonuclease 3 {ECO:0000256|HAMAP-Rule:MF_00104, ECO:0000256|SAAS:SAAS00231299}; EC=3.1.26.3 {ECO:0000256|HAMAP-Rule:MF_00104, ECO:0000256|SAAS:SAAS00231445};; Ribonuclease 3; Ribonuclease III {ECO:0000256|HAMAP-Rule:MF_00104}; TaxID=1418105 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium gallicum bv. gallicum R602.;"
ribonuclease III n=1 Tax=Rhizobium mongolense RepID=UPI0003B39A2A
rnc; ribonuclease III
SCNpilot_expt_1000_bf_scaffold_2955_curated_3
Rhizobium sp. CF142, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1259..2020)
DNA (762bp) protein (254aa)
Signal peptidase I {ECO:0000256|RuleBase:RU003993}; EC=3.4.21.89 {ECO:0000256|RuleBase:RU003993};; Flags: Precursor;; TaxID=1144314 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF142.;"
lepB; signal peptidase I protein (EC:3.4.21.89); K03100 signal peptidase I [EC:3.4.21.89]
Signal peptidase I n=1 Tax=Rhizobium sp. CF142 RepID=J2L453_9RHIZ
SCNpilot_expt_1000_bf_scaffold_2955_curated_4
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2090..2506)
DNA (417bp) protein (139aa)
Holo-[acyl-carrier-protein] synthase {ECO:0000256|HAMAP-Rule:MF_00101, ECO:0000256|SAAS:SAAS00071085}; Short=Holo-ACP synthase {ECO:0000256|HAMAP-Rule:MF_00101};; EC=2.7.8.7 {ECO:0000256|HAMAP-Rule:MF_00101, ECO:0000256|SAAS:SAAS00071082};; 4'-phosphopantetheinyl transferase AcpS {ECO:0000256|HAMAP-Rule:MF_00101}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
Holo-[acyl-carrier-protein] synthase n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CUG4_9RHIZ
acpS; holo-(acyl-carrier-protein) synthase
SCNpilot_expt_1000_bf_scaffold_2955_curated_5
Rhizobium etli, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2517..3062)
DNA (546bp) protein (182aa)
Hypothetical conserved protein n=1 Tax=Rhizobium etli (strain CFN 42 / ATCC 51251) RepID=Q2KAE6_RHIEC
hypothetical protein; K09928 hypothetical protein
Hypothetical conserved protein {ECO:0000313|EMBL:ABC90190.1}; TaxID=347834 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium etli (strain CFN 42 / ATCC 51251).;"
SCNpilot_expt_1000_bf_scaffold_2955_curated_6
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3196..3348)
DNA (153bp) protein (51aa)
Uncharacterized protein n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LH76_RHITR
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGB70567.1}; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
SCNpilot_expt_1000_bf_scaffold_2955_curated_7
Rhizobium sp. CF142, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3539..5767)
DNA (2229bp) protein (743aa)
(P)ppGpp synthetase, RelA/SpoT family n=1 Tax=Rhizobium sp. CF142 RepID=J2AWH9_9RHIZ
(P)ppGpp synthetase, RelA/SpoT family {ECO:0000313|EMBL:EJJ27830.1}; TaxID=1144314 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF142.;"
GTP pyrophosphokinase
SCNpilot_expt_1000_bf_scaffold_2955_curated_8
Rhizobium sp. YS-1r, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5862..6269)
DNA (408bp) protein (136aa)
DNA-directed RNA polymerase subunit omega {ECO:0000256|HAMAP-Rule:MF_00366, ECO:0000256|SAAS:SAAS00054253}; Short=RNAP omega subunit {ECO:0000256|HAMAP-Rule:MF_00366};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_00366, ECO:0000256|SAAS:SAAS00094401};; RNA polymerase omega subunit {ECO:0000256|HAMAP-Rule:MF_00366}; Transcriptase subunit omega {ECO:0000256|HAMAP-Rule:MF_00366}; TaxID=1532558 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.
rpoZ; DNA-directed RNA polymerase subunit omega (EC:2.7.7.6); K03060 DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
DNA-directed RNA polymerase subunit omega n=1 Tax=Rhizobium sp. CF122 RepID=J2ILS0_9RHIZ
SCNpilot_expt_1000_bf_scaffold_2955_curated_9
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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6571..7149
DNA (579bp) protein (193aa)
Uncharacterized protein n=2 Tax=Rhizobium/Agrobacterium group RepID=B9JC67_AGRRK
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACM25988.1}; TaxID=311403 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium radiobacter (strain K84 / ATCC BAA-868).;"
SCNpilot_expt_1000_bf_scaffold_2955_curated_10
R_Phenylobacterium_70_10, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(7107..7703)
DNA (597bp) protein (199aa)
Tax=RIFCSPHIGHO2_01_FULL_Phenylobacterium_70_10_curated
SCNpilot_expt_1000_bf_scaffold_2955_curated_11
Bordetella pertussis, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(7808..8599)
DNA (792bp) protein (264aa)
Uncharacterized protein n=1 Tax=Burkholderia ambifaria IOP40-10 RepID=B1FRF3_9BURK
Uncharacterised protein {ECO:0000313|EMBL:CRE07182.1}; TaxID=520 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella pertussis.;"
TBLA0E05020; hypothetical protein
Displaying 11 items

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