ggKbase home page

SCNpilot_expt_1000_bf_scaffold_2167_curated_6

Organism: scnpilot_dereplicated_Rhizobiales_12

near complete RP 44 / 55 MC: 2 BSCG 46 / 51 MC: 5 ASCG 10 / 38 MC: 2
Location: 4495..5091

Top 3 Functional Annotations

Value Algorithm Source
Putative transcriptional regulator, TetR family n=1 Tax=Agrobacterium tumefaciens F2 RepID=F7UDF8_RHIRD similarity UNIREF
DB: UNIREF100
  • Identity: 90.9
  • Coverage: 198.0
  • Bit_score: 358
  • Evalue 3.70e-96
Putative transcriptional regulator, TetR family {ECO:0000313|EMBL:EYR78755.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 94.4
  • Coverage: 197.0
  • Bit_score: 366
  • Evalue 2.50e-98
transcriptional regulator, TetR family similarity KEGG
DB: KEGG
  • Identity: 86.9
  • Coverage: 198.0
  • Bit_score: 341
  • Evalue 1.50e-91

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Shinella sp. DD12 → Shinella → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 597
ATGGCACGCACACGCGCAGTCGATTTCGAGGAAAAACAGCGTGGCATTCTGGCGAGTGCCGCGGCGGTGTTCGCCGAGATAGGCATGGAGAAGGCGTCCATGTCGATGATCGCCTCGCACAGCAATGTCTCCAAGGCGCTGCTTTACCATTATTATCCGAGCAAGGACGCGCTGATCTTCGACATCGTGCGCACGCATCTCACGGAACTGCAAGGGGCCATCGAAGCCGCCGACAGGCTGGACCTTGCACCGCAGGAGCGGCTGCGCCTGCTGGTGAAGGCCGTGCTCGCCAATTACGAGGGGCGCGACAACGAGCACAAGGTGCAGCTCAACGGCACCAGCGCGCTTTCGCCCGAGCAGCTTTCCGAATTGCAGGCGATCGAGCGACAGATCGTCAAGCGCTTCTCCGGCGTTATCCGCGATATCAACCCGGATCTCGCCGGGGAACGGCCATTGCTGATGCCCGTCACCATGTCGCTGTTCGGCATGATGAACTGGGTTTATATGTGGTTTCGCCCGAACGGGCCGATCACCCGCGACGAATATGCCGATATCGCCACCACATTGATCCTCGAAGGCGTCAAGGCGGTCCGGTAA
PROTEIN sequence
Length: 199
MARTRAVDFEEKQRGILASAAAVFAEIGMEKASMSMIASHSNVSKALLYHYYPSKDALIFDIVRTHLTELQGAIEAADRLDLAPQERLRLLVKAVLANYEGRDNEHKVQLNGTSALSPEQLSELQAIERQIVKRFSGVIRDINPDLAGERPLLMPVTMSLFGMMNWVYMWFRPNGPITRDEYADIATTLILEGVKAVR*