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SCNpilot_expt_1000_bf_scaffold_2167_curated

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Displaying 29 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_2167_curated_1
Rhizobium sp. AP16, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3..428
DNA (426bp) protein (142aa)
Beta-glucanase/beta-glucan synthetase n=1 Tax=Rhizobium sp. AP16 RepID=J2LIX0_9RHIZ
Beta-glucanase/beta-glucan synthetase {ECO:0000313|EMBL:EJK87516.1}; Flags: Precursor;; TaxID=1144306 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. AP16.;"
exsH; endo-1,3-1,4-beta-glycanase
SCNpilot_expt_1000_bf_scaffold_2167_curated_2
Agrobacterium rhizogenes, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

425..1705
DNA (1281bp) protein (427aa)
Exopolysaccharide biosynthesis protein (OMA family outer membrane saccharide export protein) n=1 Tax=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) RepID=B9JNF0_AGRRK
exoF2; exopolysaccharide biosynthesis protein (OMA family outer membrane saccharide export protein); K01991 polysaccharide export outer membrane protein
Exopolysaccharide biosynthesis protein {ECO:0000313|EMBL:KEA03411.1}; TaxID=359 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium rhizogenes.;"
SCNpilot_expt_1000_bf_scaffold_2167_curated_3
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1830..2618
DNA (789bp) protein (263aa)
Enoyl-CoA hydratase n=1 Tax=Agrobacterium tumefaciens F2 RepID=F7UDG1_RHIRD
Enoyl-CoA hydratase {ECO:0000313|EMBL:EGP55489.1}; TaxID=1050720 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium tumefaciens F2.;"
paaB; enoyl-CoA hydratase PaaB
SCNpilot_expt_1000_bf_scaffold_2167_curated_4
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2615..3055
DNA (441bp) protein (147aa)
Acyl-coenzyme A thioesterase PaaI {ECO:0000313|EMBL:EYR78757.1}; EC=3.1.2.- {ECO:0000313|EMBL:EYR78757.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
Acyl-coenzyme A thioesterase PaaI n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CXR1_9RHIZ
paaD; phenylacetic acid degradation protein PaaD
SCNpilot_expt_1000_bf_scaffold_2167_curated_5
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3097..4407
DNA (1311bp) protein (437aa)
Phenylacetate-coenzyme A ligase {ECO:0000256|PIRNR:PIRNR006444}; EC=6.2.1.30 {ECO:0000256|PIRNR:PIRNR006444};; Phenylacetyl-CoA ligase {ECO:0000256|PIRNR:PIRNR006444}; TaxID=358 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Rhizobium radiobacter (Agrobacterium tumefaciens) (Agrobacterium; radiobacter).;"
paaK2; phenylacetate-coenzyme A ligase PaaK (EC:6.2.1.30)
Phenylacetate-CoA ligase PaaF n=1 Tax=Agrobacterium tumefaciens F2 RepID=F7UDF9_RHIRD
SCNpilot_expt_1000_bf_scaffold_2167_curated_6
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4495..5091
DNA (597bp) protein (199aa)
Putative transcriptional regulator, TetR family n=1 Tax=Agrobacterium tumefaciens F2 RepID=F7UDF8_RHIRD
Putative transcriptional regulator, TetR family {ECO:0000313|EMBL:EYR78755.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
transcriptional regulator, TetR family
SCNpilot_expt_1000_bf_scaffold_2167_curated_7
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5099..5617)
DNA (519bp) protein (173aa)
Protein VdlD n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CWY0_9RHIZ
Acyl-CoA hydrolase {ECO:0000313|EMBL:EYR78754.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
thioesterase superfamily protein
SCNpilot_expt_1000_bf_scaffold_2167_curated_8
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5622..7679)
DNA (2058bp) protein (686aa)
Phenylacetic acid degradation protein PaaZ {ECO:0000313|EMBL:EYR78753.1}; EC=1.17.1.7 {ECO:0000313|EMBL:EYR78753.1};; EC=3.3.2.12 {ECO:0000313|EMBL:EYR78753.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
Bifunctional protein PaaZ n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CS92_9RHIZ
paaN; phenylacetic acid degradation protein PaaN
SCNpilot_expt_1000_bf_scaffold_2167_curated_9
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7681..8442)
DNA (762bp) protein (254aa)
Phenylacetic acid catabolic family protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EPQ7_9RHIZ
Phenylacetic acid catabolic family protein {ECO:0000313|EMBL:EYR78752.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
phenylacetic acid catabolic family protein
SCNpilot_expt_1000_bf_scaffold_2167_curated_10
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8453..9571)
DNA (1119bp) protein (373aa)
1,2-phenylacetyl-CoA epoxidase, subunit E {ECO:0000313|EMBL:EYR78751.1}; EC=1.-.-.- {ECO:0000313|EMBL:EYR78751.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
1,2-phenylacetyl-CoA epoxidase, subunit E n=1 Tax=Shinella zoogloeoides DD12 RepID=V5C705_9RHIZ
paaK; phenylacetate-CoA oxygenase/reductase, PaaK subunit
SCNpilot_expt_1000_bf_scaffold_2167_curated_11
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9612..10136)
DNA (525bp) protein (175aa)
Putative 1,2-phenylacetyl-CoA epoxidase, subunit D n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CMT0_9RHIZ
Putative 1,2-phenylacetyl-CoA epoxidase, subunit D {ECO:0000313|EMBL:EYR78750.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
paaJ; phenylacetate-CoA oxygenase, PaaJ subunit
SCNpilot_expt_1000_bf_scaffold_2167_curated_12
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10146..10901)
DNA (756bp) protein (252aa)
1,2-phenylacetyl-CoA epoxidase, subunit C n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CWX5_9RHIZ
1,2-phenylacetyl-CoA epoxidase, subunit C {ECO:0000313|EMBL:EYR78749.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
paaI; phenylacetate-CoA oxygenase, PaaI subunit
SCNpilot_expt_1000_bf_scaffold_2167_curated_13
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10901..11185)
DNA (285bp) protein (95aa)
1,2-phenylacetyl-CoA epoxidase, subunit B n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CS86_9RHIZ
1,2-phenylacetyl-CoA epoxidase, subunit B {ECO:0000313|EMBL:EYR78748.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
paaH; phenylacetate-CoA oxygenase, PaaH subunit
SCNpilot_expt_1000_bf_scaffold_2167_curated_14
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11202..12191)
DNA (990bp) protein (330aa)
1,2-phenylacetyl-CoA epoxidase, subunit A {ECO:0000313|EMBL:EYR78747.1}; EC=1.14.13.149 {ECO:0000313|EMBL:EYR78747.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
Phenylacetate-CoA oxygenase, PaaG subunit n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LU96_RHITR
paaG; phenylacetate-CoA oxygenase, PaaG subunit
SCNpilot_expt_1000_bf_scaffold_2167_curated_15
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12488..13348)
DNA (861bp) protein (287aa)
Putative regulator of phenylacetic acid degradation, ArsR family protein PaaX n=1 Tax=Shinella zoogloeoides DD12 RepID=V5ETS6_9RHIZ
Putative regulator of phenylacetic acid degradation, ArsR family protein PaaX {ECO:0000313|EMBL:EYR78745.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
paaX; putative regulator of phenylacetic acid degradation, ArsR family protein; K02616 phenylacetic acid degradation operon negative regulatory protein
SCNpilot_expt_1000_bf_scaffold_2167_curated_16
Rhizobium freirei, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13512..15080)
DNA (1569bp) protein (523aa)
D-aminopeptidase (EC:3.4.11.19)
Beta-lactamase n=1 Tax=Rhizobium freirei PRF 81 RepID=N6U3P8_9RHIZ
Beta-lactamase {ECO:0000313|EMBL:ENN84943.1}; TaxID=363754 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium freirei PRF 81.;"
SCNpilot_expt_1000_bf_scaffold_2167_curated_17
Rhizobium freirei, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15083..15592)
DNA (510bp) protein (170aa)
Uncharacterized protein n=1 Tax=Rhizobium freirei PRF 81 RepID=N6V1E0_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:ENN84942.1}; TaxID=363754 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium freirei PRF 81.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2167_curated_18
Rhodobacter sp. SW2, Rhodobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15604..16578)
DNA (975bp) protein (325aa)
Oligopeptide/dipeptide ABC transporter, ATPase subunit n=1 Tax=Rhodobacter sp. SW2 RepID=C8S551_9RHOB
Oligopeptide/dipeptide ABC transporter, ATPase subunit {ECO:0000313|EMBL:EEW23916.1}; TaxID=371731 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodobacter.;" source="Rhodobacter sp. SW2.;"
oligopeptide/dipeptide ABC transporter, ATP-binding protein
SCNpilot_expt_1000_bf_scaffold_2167_curated_19
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16575..17591)
DNA (1017bp) protein (339aa)
peptide ABC transporter ATP-binding protein n=1 Tax=Rhizobium sp. 42MFCr.1 RepID=UPI00036DBB1B
Putative peptide ABC transporter ATP-binding protein y4tR {ECO:0000313|EMBL:AHK47627.1}; TaxID=1416753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens OV14.;"
oligopeptide/dipeptide ABC transporter ATPase; K02031 peptide/nickel transport system ATP-binding protein
SCNpilot_expt_1000_bf_scaffold_2167_curated_20
Ochrobactrum sp. EGD-AQ16, Ochrobactrum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17596..18492)
DNA (897bp) protein (299aa)
Dipeptide transport system permease protein dppC n=3 Tax=Ochrobactrum RepID=C4WPT8_9RHIZ
Peptide ABC transporter permease {ECO:0000313|EMBL:ERI11986.1}; TaxID=1390361 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Ochrobactrum.;" source="Ochrobactrum sp. EGD-AQ16.;"
oligopeptide ABC transporter permease; K02034 peptide/nickel transport system permease protein
SCNpilot_expt_1000_bf_scaffold_2167_curated_21
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18492..19427)
DNA (936bp) protein (312aa)
glutathione ABC transporter permease n=1 Tax=Rhizobium sp. 42MFCr.1 RepID=UPI0003689542
Dipeptide ABC transport system permease protein DppB {ECO:0000313|EMBL:AHK47625.1}; TaxID=1416753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens OV14.;"
binding-protein-dependent transport systems inner membrane component; K02033 peptide/nickel transport system permease protein
SCNpilot_expt_1000_bf_scaffold_2167_curated_22
unknown

Not on your lists

19641..21185
DNA (1545bp) protein (515aa)
hypothetical protein id=3368254 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
SCNpilot_expt_1000_bf_scaffold_2167_curated_23
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21246..22583)
DNA (1338bp) protein (446aa)
Diaminopimelate decarboxylase {ECO:0000256|HAMAP-Rule:MF_02120, ECO:0000256|RuleBase:RU003738}; Short=DAP decarboxylase {ECO:0000256|HAMAP-Rule:MF_02120};; Short=DAPDC {ECO:0000256|HAMAP-Rule:MF_02120};; EC=4.1.1.20 {ECO:0000256|HAMAP-Rule:MF_02120, ECO:0000256|RuleBase:RU003738};; TaxID=1416753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens OV14.;"
diaminopimelate decarboxylase (EC:4.1.1.20)
hypothetical protein n=1 Tax=Rhizobium sp. 42MFCr.1 RepID=UPI00037807E6
SCNpilot_expt_1000_bf_scaffold_2167_curated_24
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22702..23622
DNA (921bp) protein (307aa)
hypothetical protein n=1 Tax=Rhizobium sp. 42MFCr.1 RepID=UPI00037FF66E
Putative transcriptional regulatory protein, LysR family {ECO:0000313|EMBL:AHK47621.1}; TaxID=1416753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens OV14.;"
LysR family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_2167_curated_25
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23927..24901)
DNA (975bp) protein (325aa)
Thiamine biosynthesis lipoprotein ApbE n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D5T2_9RHIZ
Thiamine biosynthesis lipoprotein ApbE {ECO:0000313|EMBL:EYR79381.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
thiamine biosynthesis lipoprotein ApbE; K03734 thiamine biosynthesis lipoprotein
SCNpilot_expt_1000_bf_scaffold_2167_curated_26
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24882..27089)
DNA (2208bp) protein (736aa)
oxidoreductase FAD-binding subunit; K00380 sulfite reductase (NADPH) flavoprotein alpha-component [EC:1.8.1.2]
Oxidoreductase n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CWX2_9RHIZ
Oxidoreductase {ECO:0000313|EMBL:EYR79382.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
SCNpilot_expt_1000_bf_scaffold_2167_curated_27
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27102..27569)
DNA (468bp) protein (156aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CGU9_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EYR79383.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
Tat (Twin-arginine translocation) pathway signal sequence domain-containing protein
SCNpilot_expt_1000_bf_scaffold_2167_curated_28
Devosia sp. 17-2-E-8, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27836..28351)
DNA (516bp) protein (172aa)
Cytochrome B561 n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EXU8_9RHIZ
Cytochrome B561 {ECO:0000313|EMBL:KFL24909.1}; TaxID=1535287 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. 17-2-E-8.;"
cytochrome b561 family protein
SCNpilot_expt_1000_bf_scaffold_2167_curated_29
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28406..28681)
DNA (276bp) protein (92aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D198_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EYR79385.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
Displaying 29 items

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