ggKbase home page

SCNpilot_expt_1000_bf_scaffold_1782_curated_4

Organism: scnpilot_dereplicated_Rhizobiales_12

near complete RP 44 / 55 MC: 2 BSCG 46 / 51 MC: 5 ASCG 10 / 38 MC: 2
Location: 3269..4306

Top 3 Functional Annotations

Value Algorithm Source
Spermidine/putrescine-binding periplasmic protein 1 n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CWZ3_9RHIZ similarity UNIREF
DB: UNIREF100
  • Identity: 96.7
  • Coverage: 331.0
  • Bit_score: 654
  • Evalue 4.30e-185
Spermidine/putrescine-binding periplasmic protein 1 {ECO:0000313|EMBL:EYR79412.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 96.7
  • Coverage: 331.0
  • Bit_score: 654
  • Evalue 6.00e-185
ABC transporter substrate-binding protein; K11069 spermidine/putrescine transport system substrate-binding protein similarity KEGG
DB: KEGG
  • Identity: 37.2
  • Coverage: 301.0
  • Bit_score: 211
  • Evalue 3.90e-52

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Shinella sp. DD12 → Shinella → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 1038
ATGACTGATAATCACAATCATATCCGCGTGCTTGCCTCCGCAGACTGGACCCGGCGCAATTTCTTGCGCCTAGCGGCCTTTGCGGGAGGTGTGGCCGCCCTGTCCGTCAACGGCGTTGCCATCGCCGCGGATAAGGGCGATCTCGCCGAAAAAGCGCGCAACCTGAAGGGTGATGCCGCACTGGGCGACACGCTATTCATCTATTCCTGGGCGGACTACGCCAACCCGGACGTGCTCGACGCCTTTTCGAAGGGCGCCGGTCCGCGCATTGAAATCGCCACCTTCGATTCCGTCGAAGCGGCCATCGCCAAGCTGGAAATCTCAGGCGGCTCCGCCGGCTACGACATCGTCGTCGTGGGCGATGCCTATGTGGAACAGATGATCAATCGCAAGCTGATCCAGAAGCTGGACCATTCGAAGATTCCGAATCTTGGAAACTTGCGCGACGAATTCCACAAGCTGCCATTCGATCCGGGCAATCAGTACACGGTTATGAAGAATTTCGGCACCATCGGCATTCTCTACAACAACACCGTGATCAAGGAGCCGATCAAGTCCTGGGACGATTTCTTCCGGGTGGGCGCCTCCGAGGTTGCAAGCCACCGTCTCTCCGTCCTCAACGACCAGCCGAGCGTCTTCGGTCTCGTCTTCTGGCGCGAAGGCAAGGACTACAATACGGGTGACGAGAAGCGCCTGAACGAAGCCAAGGATGTGCTGATTAAGGACCTCATCCCGCACCTCAAGGCCTTCGACGCCAACCCTGTGCAGGGACTGCTGAACGGCGACTACGTGCTTAGCCAAGGCTATCTCGGCAGCTCGCGCCATATTTTCGAGCAGGATCCCGACAGCTACACCTGGGTCTATCCGGAGCCGCAATGCGTGCTGTGGAGCGATCATTACGCGGTGCCGTCCGGGTCCAGGCACACAGACGCCGCCCATGCCTTCATCAACTATATGCTGGATCCAGATGTAGCCGCAGCCGAAGTGGCCCATANNNNNNNNCACCGGCGTAAAGGGTGTCATCGAGAAGCTGCCTGA
PROTEIN sequence
Length: 346
MTDNHNHIRVLASADWTRRNFLRLAAFAGGVAALSVNGVAIAADKGDLAEKARNLKGDAALGDTLFIYSWADYANPDVLDAFSKGAGPRIEIATFDSVEAAIAKLEISGGSAGYDIVVVGDAYVEQMINRKLIQKLDHSKIPNLGNLRDEFHKLPFDPGNQYTVMKNFGTIGILYNNTVIKEPIKSWDDFFRVGASEVASHRLSVLNDQPSVFGLVFWREGKDYNTGDEKRLNEAKDVLIKDLIPHLKAFDANPVQGLLNGDYVLSQGYLGSSRHIFEQDPDSYTWVYPEPQCVLWSDHYAVPSGSRHTDAAHAFINYMLDPDVAAAEVAHXXXHRRKGCHREAA*