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SCNpilot_expt_1000_bf_scaffold_1782_curated

Search features with annotation key words

Displaying items 1-30 of 56 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_1782_curated_1
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3..1136
DNA (1134bp) protein (378aa)
5-methylthioadenosine/S-adenosylhomocysteine deaminase {ECO:0000313|EMBL:EYR79415.1}; EC=3.5.4.28 {ECO:0000313|EMBL:EYR79415.1};; EC=3.5.4.31 {ECO:0000313|EMBL:EYR79415.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
5-methylthioadenosine/S-adenosylhomocysteine deaminase n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D1C5_9RHIZ
amidohydrolase
SCNpilot_expt_1000_bf_scaffold_1782_curated_2
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1232..1981
DNA (750bp) protein (250aa)
3-oxoacyl-[acyl-carrier-protein] reductase FabG {ECO:0000313|EMBL:EYR79414.1}; EC=1.1.1.100 {ECO:0000313|EMBL:EYR79414.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
3-oxoacyl-[acyl-carrier-protein] reductase FabG n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EXW5_9RHIZ
short-chain dehydrogenase/reductase SDR
SCNpilot_expt_1000_bf_scaffold_1782_curated_3
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1984..3120
DNA (1137bp) protein (379aa)
Polyamine-transporting ATPase {ECO:0000256|SAAS:SAAS00083160}; EC=3.6.3.31 {ECO:0000256|SAAS:SAAS00083160};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
spermidine/putrescine ABC transporter ATPase; K11072 spermidine/putrescine transport system ATP-binding protein [EC:3.6.3.31]
Spermidine/putrescine import ATP-binding protein PotA n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CGY4_9RHIZ
SCNpilot_expt_1000_bf_scaffold_1782_curated_4
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3269..4306
DNA (1038bp) protein (346aa)
Spermidine/putrescine-binding periplasmic protein 1 n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CWZ3_9RHIZ
Spermidine/putrescine-binding periplasmic protein 1 {ECO:0000313|EMBL:EYR79412.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
ABC transporter substrate-binding protein; K11069 spermidine/putrescine transport system substrate-binding protein
SCNpilot_expt_1000_bf_scaffold_1782_curated_5
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4332..4445
DNA (114bp) protein (38aa)
Spermidine/putrescine-binding periplasmic protein 1 n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CWZ3_9RHIZ
Spermidine/putrescine-binding periplasmic protein 1 {ECO:0000313|EMBL:EYR79412.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
SCNpilot_expt_1000_bf_scaffold_1782_curated_6
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4592..5524
DNA (933bp) protein (311aa)
Spermidine/putrescine transport system permease protein PotB n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D5V6_9RHIZ
Spermidine/putrescine transport system permease protein PotB {ECO:0000313|EMBL:EYR79411.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
putative spermidine/putrescine ABC transporter permease
SCNpilot_expt_1000_bf_scaffold_1782_curated_7
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5521..6372
DNA (852bp) protein (284aa)
ABC transporter permease (EC:3.6.3.31); K11074 putrescine transport system permease protein
Putrescine ABC transporter, permease protein PotI n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D1C0_9RHIZ
Putrescine ABC transporter, permease protein PotI {ECO:0000313|EMBL:EYR79410.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
SCNpilot_expt_1000_bf_scaffold_1782_curated_8
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6402..7139
DNA (738bp) protein (246aa)
3-oxoacyl-[acyl-carrier-protein] reductase FabG {ECO:0000313|EMBL:EYR79409.1}; EC=1.1.1.100 {ECO:0000313|EMBL:EYR79409.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
3-oxoacyl-[acyl-carrier-protein] reductase FabG n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EXW2_9RHIZ
short-chain dehydrogenase/reductase SDR
SCNpilot_expt_1000_bf_scaffold_1782_curated_9
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7197..8591
DNA (1395bp) protein (465aa)
D-hydantoinase HyuA {ECO:0000313|EMBL:EYR79408.1}; EC=3.5.2.- {ECO:0000313|EMBL:EYR79408.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
phenylhydantoinase; K01464 dihydropyrimidinase [EC:3.5.2.2]
D-hydantoinase HyuA n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CGY0_9RHIZ
SCNpilot_expt_1000_bf_scaffold_1782_curated_10
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8608..9501)
DNA (894bp) protein (298aa)
Transcriptional regulator, IclR family n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CWZ0_9RHIZ
Transcriptional regulator, IclR family {ECO:0000313|EMBL:EYR79407.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
IclR family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_1782_curated_11
unknown

Not on your lists

comp(10047..10751)
DNA (705bp) protein (235aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1782_curated_12
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10751..12049)
DNA (1299bp) protein (433aa)
Transcriptional regulator, GntR family n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CUB4_9RHIZ
Transcriptional regulator, GntR family {ECO:0000313|EMBL:EYR79274.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
aspartate transaminase; K00375 GntR family transcriptional regulator / MocR family aminotransferase
SCNpilot_expt_1000_bf_scaffold_1782_curated_13
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12572..13177
DNA (606bp) protein (202aa)
taurine ABC transporter substrate-binding protein n=1 Tax=Hoeflea sp. 108 RepID=UPI00036103DB
Taurine-binding periplasmic protein TauA {ECO:0000313|EMBL:EYR79273.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
taurine ABC transporter periplasmic binding protein; K15551 taurine transport system substrate-binding protein
SCNpilot_expt_1000_bf_scaffold_1782_curated_14
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13334..14146
DNA (813bp) protein (271aa)
Taurine import ATP-binding protein TauB {ECO:0000256|HAMAP-Rule:MF_01714}; EC=3.6.3.36 {ECO:0000256|HAMAP-Rule:MF_01714};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
taurine-transporting ATPase (EC:3.6.3.36)
Taurine import ATP-binding protein TauB n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CUM3_9RHIZ
SCNpilot_expt_1000_bf_scaffold_1782_curated_15
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14596..14985
DNA (390bp) protein (130aa)
Taurine transport system permease protein TauC n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D3L9_9RHIZ
Taurine ABC transporter permease {ECO:0000313|EMBL:KDP75649.1}; TaxID=106592 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens (Sinorhizobium morelense).;"
binding-protein-dependent transport system inner membrane protein; K15552 taurine transport system permease protein
SCNpilot_expt_1000_bf_scaffold_1782_curated_16
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15085..15471
DNA (387bp) protein (129aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CYX3_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EYR79270.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1782_curated_17
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15488..16888
DNA (1401bp) protein (467aa)
Gamma-glutamylputrescine oxidoreductase PuuB n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EW24_9RHIZ
FAD-dependent oxidoreductase {ECO:0000313|EMBL:KDP75647.1}; TaxID=106592 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens (Sinorhizobium morelense).;"
FAD dependent oxidoreductase
SCNpilot_expt_1000_bf_scaffold_1782_curated_18
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16925..18700
DNA (1776bp) protein (592aa)
Putative sulfoacetaldehyde acetyltransferase Xsc {ECO:0000313|EMBL:EYR79268.1}; EC=2.3.3.15 {ECO:0000313|EMBL:EYR79268.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
ilvB2; sulfoacetaldehyde acetyltransferase; K03852 sulfoacetaldehyde acetyltransferase [EC:2.3.3.15]
Putative sulfoacetaldehyde acetyltransferase Xsc n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CEN6_9RHIZ
SCNpilot_expt_1000_bf_scaffold_1782_curated_19
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18774..19736
DNA (963bp) protein (321aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CUL7_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EYR79267.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1782_curated_20
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19794..20792
DNA (999bp) protein (333aa)
Phosphate acetyltransferase Pta {ECO:0000313|EMBL:EYR79266.1}; EC=2.3.1.8 {ECO:0000313|EMBL:EYR79266.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
pta2; putative phosphate acetyltransferase protein; K00625 phosphate acetyltransferase [EC:2.3.1.8]
Phosphate acetyltransferase Pta n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D3L4_9RHIZ
SCNpilot_expt_1000_bf_scaffold_1782_curated_21
unknown

Not on your lists

22052..22387
DNA (336bp) protein (112aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1782_curated_22
Devosia riboflavina, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22734..23789)
DNA (1056bp) protein (352aa)
Acyltransferase/acetyltransferase n=1 Tax=Pelagibaca bermudensis (strain JCM 13377 / KCTC 12554 / HTCC2601) RepID=Q0FNZ3_PELBH
Uncharacterized protein {ECO:0000313|EMBL:KFL31622.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
acyltransferase, putative
SCNpilot_expt_1000_bf_scaffold_1782_curated_23
Paracoccus halophilus, Paracoccus, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23879..25327)
DNA (1449bp) protein (483aa)
UDP-N-acetylglucosamine 1-carboxyvinyltransferase n=1 Tax=Bradyrhizobium sp. DFCI-1 RepID=U1HKL5_9BRAD
GntR family transcriptional regulator {ECO:0000313|EMBL:KGJ02912.1}; TaxID=376733 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Paracoccus.;" source="Paracoccus halophilus.;"
HTH-type transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_1782_curated_24
Bradyrhizobium sp. DFCI-1, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25444..26304
DNA (861bp) protein (287aa)
transporter n=1 Tax=Bradyrhizobium elkanii RepID=UPI00037EC147
Dihydroorotate dehydrogenase (Fumarate) {ECO:0000313|EMBL:ERF84990.1}; TaxID=1230476 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. DFCI-1.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1782_curated_25
Devosia limi, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26322..26921)
DNA (600bp) protein (200aa)
hypothetical protein n=1 Tax=Aureimonas ureilytica RepID=UPI00036FA558
LuxR family transcriptional regulator {ECO:0000313|EMBL:KKB76843.1}; TaxID=1121477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia limi DSM 17137.;"
LuxR family transcriptional regulator/sensory box protein
SCNpilot_expt_1000_bf_scaffold_1782_curated_26
Methylobacterium nodulans, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26998..27714
DNA (717bp) protein (239aa)
3-oxoacid CoA-transferase subunit A (EC:2.8.3.5); K01028 3-oxoacid CoA-transferase subunit A [EC:2.8.3.5]
3-oxoacid CoA-transferase, A subunit {ECO:0000313|EMBL:ACL61151.1}; EC=2.8.3.5 {ECO:0000313|EMBL:ACL61151.1};; TaxID=460265 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium nodulans (strain ORS2060 / LMG 21967).;"
3-oxoacid CoA-transferase, A subunit n=1 Tax=Methylobacterium nodulans (strain ORS2060 / LMG 21967) RepID=B8IBW9_METNO
SCNpilot_expt_1000_bf_scaffold_1782_curated_27
Devosia sp. LC5, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27714..28361
DNA (648bp) protein (216aa)
Acetyl-CoA:acetoacetyl-CoA transferase, beta subunit {ECO:0000313|EMBL:KFC66241.1}; EC=2.8.3.- {ECO:0000313|EMBL:KFC66241.1};; TaxID=1502724 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. LC5.;"
3-oxoacid CoA-transferase subunit B; K01029 3-oxoacid CoA-transferase subunit B [EC:2.8.3.5]
succinyl-CoA:3-ketoacid-CoA transferase n=1 Tax=Aureimonas ureilytica RepID=UPI00035CE51C
SCNpilot_expt_1000_bf_scaffold_1782_curated_28
Yersinia similis, Yersinia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28634..29395)
DNA (762bp) protein (254aa)
3-oxoacyl-ACP reductase n=1 Tax=Paracoccus sp. TRP RepID=UPI000225FCC2
3-oxoacyl-ACP reductase {ECO:0000313|EMBL:AHK20563.1}; TaxID=367190 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Yersinia.;" source="Yersinia similis.;"
short chain dehydrogenase/reductase family oxidoreductase
SCNpilot_expt_1000_bf_scaffold_1782_curated_29
Yersinia similis, Yersinia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29406..30194)
DNA (789bp) protein (263aa)
D-isomer specific 2-hydroxyacid dehydrogenase family protein; K00058 D-3-phosphoglycerate dehydrogenase [EC:1.1.1.95]
D-lactate dehydrogenase n=1 Tax=Pseudomonas tolaasii RepID=UPI0003169F48
Dihydrofolate reductase {ECO:0000313|EMBL:AHK20564.1}; TaxID=367190 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Yersinia.;" source="Yersinia similis.;"
SCNpilot_expt_1000_bf_scaffold_1782_curated_30
Acinetobacter guillouiae, Acinetobacter, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30374..31519)
DNA (1146bp) protein (382aa)
fumarylacetoacetate hydrolase n=1 Tax=Paracoccus sp. TRP RepID=UPI000225FCC0
Uncharacterized protein {ECO:0000313|EMBL:ENU58131.1}; TaxID=1217655 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Moraxellaceae; Acinetobacter.;" source="Acinetobacter guillouiae CIP 63.46.;"
hypothetical protein
Displaying items 1-30 of 56 in total

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