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SCNpilot_expt_1000_bf_scaffold_1782_curated_7

Organism: scnpilot_dereplicated_Rhizobiales_12

near complete RP 44 / 55 MC: 2 BSCG 46 / 51 MC: 5 ASCG 10 / 38 MC: 2
Location: 5521..6372

Top 3 Functional Annotations

Value Algorithm Source
ABC transporter permease (EC:3.6.3.31); K11074 putrescine transport system permease protein similarity KEGG
DB: KEGG
  • Identity: 40.2
  • Coverage: 286.0
  • Bit_score: 198
  • Evalue 2.20e-48
Putrescine ABC transporter, permease protein PotI n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D1C0_9RHIZ similarity UNIREF
DB: UNIREF100
  • Identity: 97.2
  • Coverage: 283.0
  • Bit_score: 528
  • Evalue 3.80e-147
Putrescine ABC transporter, permease protein PotI {ECO:0000313|EMBL:EYR79410.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 97.2
  • Coverage: 283.0
  • Bit_score: 528
  • Evalue 5.30e-147

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Taxonomy

Shinella sp. DD12 → Shinella → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 852
ATGAGCACGTTCCGTCTATTCTCGGCAAAGTCCGCCCTGCTTGGCGCCTGGTCGCTGTTCGTCGTCTTCTTCCTGTTGCTTCCCATCGTGACGGTCCTGGTTTACTCATTCAACACCGGCAATTATCTGATCGCGTGGAAGGCGACAGGGTGGCGCTGGTACTGGCGTATTCTCGAGGACGGCAACATCCTCGCCACATTGCGCACCAGCCTGAGCGTCGCCGTTCTCTCCACGCTTCTCAGCCTTGTCGTCGGAGGAATGAGCGGTCTGATCCTCGGACGCCGGCCGGCGGCCATCGCCTATCCCTTGAGCCTGCTGCTGCTCACGATTATTTCCTTTCCCGAGATCGTGAAGGCGGTCGCCTATCTGACCTGGTTCGTCAAGATCGACCTGCAGATCGGAATCCTGCGTATCGCCATATCTCACGCGCTGTTCGGCAGCGCCATCGTCGCGTTCATCGTTCGCGCGCGGCTTTCCGGAATGGATGGCAGGATCGAGGAGGCGTCGGCCGATCTGGGCGCCACGCCCATGGTCACTTTCTTCACCGTGACGCTTCCCCTGCTCATGCCGGCTTTTCTGGTCGGTGGTCTTCTCGCCTTCACGCTGTCCTTCGACGACGTGATCGTCTCCCTGTTCGTTGGCACGGCCAACAGTACGACCTTGCCCGTCTATATCCTTGCCTCGGTCAGGCAGGGCCTGAAGGGCGATATTGCCGCCGTCTCGGCCGTCATGTTCTGTCTCACGATTCTCGCCTTCACCTGCGCGGGCATCTATCTCGCCCGCACCGGCGCATCCCGGCGCGACACCGTCCTGATGCTCGCGGGCCAGAACGATGCGCATGCCGGACAATAA
PROTEIN sequence
Length: 284
MSTFRLFSAKSALLGAWSLFVVFFLLLPIVTVLVYSFNTGNYLIAWKATGWRWYWRILEDGNILATLRTSLSVAVLSTLLSLVVGGMSGLILGRRPAAIAYPLSLLLLTIISFPEIVKAVAYLTWFVKIDLQIGILRIAISHALFGSAIVAFIVRARLSGMDGRIEEASADLGATPMVTFFTVTLPLLMPAFLVGGLLAFTLSFDDVIVSLFVGTANSTTLPVYILASVRQGLKGDIAAVSAVMFCLTILAFTCAGIYLARTGASRRDTVLMLAGQNDAHAGQ*