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SCNpilot_expt_1000_bf_scaffold_1782_curated_6

Organism: scnpilot_dereplicated_Rhizobiales_12

near complete RP 44 / 55 MC: 2 BSCG 46 / 51 MC: 5 ASCG 10 / 38 MC: 2
Location: 4592..5524

Top 3 Functional Annotations

Value Algorithm Source
Spermidine/putrescine transport system permease protein PotB n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D5V6_9RHIZ similarity UNIREF
DB: UNIREF100
  • Identity: 93.9
  • Coverage: 310.0
  • Bit_score: 572
  • Evalue 3.30e-160
Spermidine/putrescine transport system permease protein PotB {ECO:0000313|EMBL:EYR79411.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 93.9
  • Coverage: 310.0
  • Bit_score: 572
  • Evalue 4.60e-160
putative spermidine/putrescine ABC transporter permease similarity KEGG
DB: KEGG
  • Identity: 38.9
  • Coverage: 288.0
  • Bit_score: 211
  • Evalue 4.60e-52

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Taxonomy

Shinella sp. DD12 → Shinella → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 933
TTGACCTCGACAACGGTCCAGGCGAATACATCCACCACTCCTGGAGGGCGGAAGGCAGCAAGCTTCGGCTTCGCCGTGGTGCTTCTACCGTTCTTGCTGTACGCCGCCTTTTTCACCGCTCCTGTGGTCTTGATCGCCGTGCAGAGCCTGACGCCCTATGTCGTGGGCAGCAATGGCGGACTGTCGGGCGCTGGAGGCCTGACGCTCGACAACTATGCCGGCGTCTTCTCTCCCACCTTCCGTTCGGTCTTTGCAGACAGCCTGCGCAATGCGCTGGCGGGGTCGCTGTTGTGCCTGTTGATCGGCTACCCGGTCGCCTATTTCATCAGCACCCGCTGCTCTGAACGCCTGAAGCCCTGGTTTCTCGTGCTGGTCATCCTGCCGTTTTGGACGAGCTACCTGCTTCGCATGCTCGGCTGGCGCATTCTTCTTGGCGCCAATGGCGATATTTCCGCCGCTCTCCAGAACCTGCACCTGCTTGCCCCCGGCCAAGGTCTGCTCTTTACCCAGGCTGCCGTCCTGCTCGGGCTTGTCTACAATTTCCTGCCGGTGATGATCCTGCCAATCTATGTCTCGATCGAGCGCCTTTCACGCGATCACCGGGACGCCAGCCGTGATCTCTACGCCCGACCCTGGCAAACCTTCCTCAGTATCACGCTGCCGCTCACCTATCCCGGCATCATGGCCGGGATAACTGTGGTCTTCATCATGATGACCGGCGACTACGTCACGCCGGAGCTGATGGGCGGGGCCAAAGGCATGATGGTCGGTACCCTGATCTATTCGCAGTTCCTGCAGGGAGAAAACTGGCCTCTGGCTTCCGCCATGTCGCTTTCGCTGGTTTTCGTTCTGGTGGTCGCGGTCCTGGTGATGAGCGCCGTGGGATCGGGTCTTAACCGGCTTCCGACGCTCTTCAGAAGGGCGACCCGATGA
PROTEIN sequence
Length: 311
LTSTTVQANTSTTPGGRKAASFGFAVVLLPFLLYAAFFTAPVVLIAVQSLTPYVVGSNGGLSGAGGLTLDNYAGVFSPTFRSVFADSLRNALAGSLLCLLIGYPVAYFISTRCSERLKPWFLVLVILPFWTSYLLRMLGWRILLGANGDISAALQNLHLLAPGQGLLFTQAAVLLGLVYNFLPVMILPIYVSIERLSRDHRDASRDLYARPWQTFLSITLPLTYPGIMAGITVVFIMMTGDYVTPELMGGAKGMMVGTLIYSQFLQGENWPLASAMSLSLVFVLVVAVLVMSAVGSGLNRLPTLFRRATR*