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SCNpilot_expt_1000_bf_scaffold_2766_curated_14

Organism: scnpilot_dereplicated_Rhizobiales_12

near complete RP 44 / 55 MC: 2 BSCG 46 / 51 MC: 5 ASCG 10 / 38 MC: 2
Location: 13557..14597

Top 3 Functional Annotations

Value Algorithm Source
L-threonine dehydratase catabolic TdcB {ECO:0000313|EMBL:EYR77399.1}; EC=4.3.1.19 {ECO:0000313|EMBL:EYR77399.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 84.3
  • Coverage: 324.0
  • Bit_score: 542
  • Evalue 3.30e-151
pyridoxal-5'-phosphate-dependent protein subunit beta; K01754 threonine dehydratase [EC:4.3.1.19] similarity KEGG
DB: KEGG
  • Identity: 80.9
  • Coverage: 324.0
  • Bit_score: 522
  • Evalue 8.00e-146
L-threonine dehydratase catabolic TdcB n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CX21_9RHIZ similarity UNIREF
DB: UNIREF100
  • Identity: 84.3
  • Coverage: 324.0
  • Bit_score: 542
  • Evalue 2.40e-151

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Taxonomy

Shinella sp. DD12 → Shinella → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 1041
ATGCACATTCCCACGGATGCGACGGTGATCTATGGATTGGGCAGCAAACAGCCCGGAAGCGTGTTTATGACATCCATCGAAATGATCGCCGCCGCCCGCGCCCGCCTGCAGGGCCATATCCGCCGCACGCCATTATTGTCGTCGCCGTTCTTCGACGAGATGGCCGGGCGGCGCGTCTTCGTAAAGGCGGAATGCCTGCAGCATACCGGTTCGTTCAAGTTTCGGGGCGGCTGGTCCGCGCTTTCGGGGCTGGGGCCGCAGGTTCGCAGCCGTGGCGTGATCGCGTTTTCCTCGGGAAACCATGCGCAAGGGGTCGCCCTTGCCGCAAAGCGGCACGACGTTCCCTCGGTGATCATCATGCCCGCCGACGCGCCCCGGCTGAAAATCGAGAATACGCGCGCCTTCGGCGCGGATGTCGTTCTCTACGACCGCGAAAAGGAAGATCGTGACGCCATCGGCGCCCGTTTGTCCGAGGAGCGTGATCTCACCTTGATAAAGCCGTTCGACGACCCGCTGGTCATCGCCGGCCAAGGCACGACCGGCCTCGAAATCGCCGCGCAGGCGGATGAGGAAGGCATTCGGGCGGCCGAGGTTCTGGTGCCCTGCGGCGGCGGCGGACTGAGCGCCGGCATCGCGCTCGCCTTGGAAGCGCACGCGCCGCATTTCACCCTCCGCACCTGCGAGCCCGAGCATTTCGACGATACCGCCCGCTCGCTGCGCTCCGGGACGACCACGCGAAACGCCGCCATCTCCGGCTCCATCTGCGATGCGATATTGACGCCGGAACCCGGCAAGCTCACCTTTCCCATCCTCAAGCGTCTCGCGGCCGCCGGGATCGCGGTGACGGACGAGGAAGCCTTGCGCGCCATGGCGCTCGCCTTCAAGCGTCTGAAAATCGTCGTCGAGCCCGGCGGCGCCGTCGCGTTGGCCGCCGCCTTGTTCCACGGCAAGGCGTTGGAAAGCGACACTGTCATCGCCGTCGCTTCCGGCGGCAATGTCGATACGGCGGTGTTCTCGATGGCGCTCGAACGCTTCGGCTGA
PROTEIN sequence
Length: 347
MHIPTDATVIYGLGSKQPGSVFMTSIEMIAAARARLQGHIRRTPLLSSPFFDEMAGRRVFVKAECLQHTGSFKFRGGWSALSGLGPQVRSRGVIAFSSGNHAQGVALAAKRHDVPSVIIMPADAPRLKIENTRAFGADVVLYDREKEDRDAIGARLSEERDLTLIKPFDDPLVIAGQGTTGLEIAAQADEEGIRAAEVLVPCGGGGLSAGIALALEAHAPHFTLRTCEPEHFDDTARSLRSGTTTRNAAISGSICDAILTPEPGKLTFPILKRLAAAGIAVTDEEALRAMALAFKRLKIVVEPGGAVALAAALFHGKALESDTVIAVASGGNVDTAVFSMALERFG*