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SCNpilot_expt_1000_bf_scaffold_2766_curated

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Displaying 19 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_2766_curated_1
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2..790
DNA (789bp) protein (263aa)
Putative amino acid uptake ABC transporter permease protein n=1 Tax=Rhizobium grahamii CCGE 502 RepID=S3HJU8_9RHIZ
Amino acid ABC transporter permease {ECO:0000313|EMBL:KDP70569.1}; TaxID=106592 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens (Sinorhizobium morelense).;"
polar amino acid ABC transporter inner membrane subunit
SCNpilot_expt_1000_bf_scaffold_2766_curated_2
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

771..1457
DNA (687bp) protein (229aa)
Putative oxidoreductase protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CGQ8_9RHIZ
Oxidoreductase {ECO:0000313|EMBL:KDP70570.1}; TaxID=106592 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens (Sinorhizobium morelense).;"
short-chain dehydrogenase/reductase SDR
SCNpilot_expt_1000_bf_scaffold_2766_curated_3
Rhizobium grahamii, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1466..2500
DNA (1035bp) protein (345aa)
LacI family transcriptional regulator n=1 Tax=Rhizobium grahamii CCGE 502 RepID=S3HHI6_9RHIZ
LacI family transcriptional regulator {ECO:0000313|EMBL:EPE98297.1}; TaxID=990285 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium grahamii CCGE 502.;"
LacI family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_2766_curated_4
Rhizobium grahamii, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2526..4526
DNA (2001bp) protein (667aa)
Beta-galactosidase {ECO:0000256|PIRNR:PIRNR001084}; Short=Beta-gal {ECO:0000256|PIRNR:PIRNR001084};; EC=3.2.1.23 {ECO:0000256|PIRNR:PIRNR001084};; TaxID=990285 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium grahamii CCGE 502.;"
Beta-galactosidase (EC:3.2.1.23)
Beta-galactosidase n=1 Tax=Rhizobium grahamii CCGE 502 RepID=S3HZ35_9RHIZ
SCNpilot_expt_1000_bf_scaffold_2766_curated_5
RBG_16_Betaproteobacteria_64_18_curated, Betaproteobacteria, Proteobacteria, Bacteria

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comp(4676..5398)
DNA (723bp) protein (241aa)
amidase; K02433 aspartyl-tRNA(Asn)/glutamyl-tRNA (Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7]
Putative Glu-tRNA amidotransferase n=1 Tax=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) RepID=A8HSI8_AZOC5
Tax=RBG_16_Betaproteobacteria_64_18_curated
SCNpilot_expt_1000_bf_scaffold_2766_curated_6
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5395..6024)
DNA (630bp) protein (210aa)
putative Glu-tRNA amidotransferase; K02433 aspartyl-tRNA(Asn)/glutamyl-tRNA (Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7]
amidase n=1 Tax=Mesorhizobium sp. WSM4349 RepID=UPI000362C228
Amidase, Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit {ECO:0000313|EMBL:KFC68472.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
SCNpilot_expt_1000_bf_scaffold_2766_curated_7
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6108..7034)
DNA (927bp) protein (309aa)
LysR family transcriptional regulator n=1 Tax=Rhizobium freirei PRF 81 RepID=N6U301_9RHIZ
LysR family transcriptional regulator {ECO:0000313|EMBL:KDP71724.1}; TaxID=106592 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens (Sinorhizobium morelense).;"
gcvA6; glycine cleavage system transcriptional activator
SCNpilot_expt_1000_bf_scaffold_2766_curated_8
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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7159..8412
DNA (1254bp) protein (418aa)
Uncharacterized protein n=1 Tax=Rhizobium freirei PRF 81 RepID=N6TW93_9RHIZ
(Fe-S)-binding protein {ECO:0000313|EMBL:KDP71725.1}; TaxID=106592 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens (Sinorhizobium morelense).;"
ring-hydroxylating dioxygenase protein
SCNpilot_expt_1000_bf_scaffold_2766_curated_9
Neorhizobium galegae, Neorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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8832..9491
DNA (660bp) protein (220aa)
Oxidoreductase FAD-binding protein domain protein n=1 Tax=Rhizobium freirei PRF 81 RepID=N6USP9_9RHIZ
Putative ferredoxin oxidoreductase, NAD/FAD-binding {ECO:0000313|EMBL:CDN58306.1}; TaxID=399 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Neorhizobium.;" source="Rhizobium galegae.;"
oxidoreductase FAD-binding domain-containing protein
SCNpilot_expt_1000_bf_scaffold_2766_curated_10
Ochrobactrum sp. EGD-AQ16, Ochrobactrum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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10280..10711
DNA (432bp) protein (144aa)
Membrane protein n=1 Tax=Ochrobactrum sp. EGD-AQ16 RepID=U1YWK5_9RHIZ
Membrane protein {ECO:0000313|EMBL:ERI15066.1}; TaxID=1390361 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Ochrobactrum.;" source="Ochrobactrum sp. EGD-AQ16.;"
hypothetical protein; K15270 S-adenosylmethionine uptake transporter
SCNpilot_expt_1000_bf_scaffold_2766_curated_11
Neorhizobium galegae, Neorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10878..11972
DNA (1095bp) protein (365aa)
Methionine import ATP-binding protein MetN {ECO:0000256|HAMAP-Rule:MF_01719}; EC=3.6.3.- {ECO:0000256|HAMAP-Rule:MF_01719};; TaxID=399 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Neorhizobium.;" source="Rhizobium galegae.;"
hypothetical protein n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI0003092CF6
metN; D-and L-methionine ABC transporter, ATP binding protein
SCNpilot_expt_1000_bf_scaffold_2766_curated_12
Agrobacterium rubi, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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11962..12630
DNA (669bp) protein (223aa)
methionine ABC transporter permease n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI00036E5E2F
D-methionine ABC transporter permease protein {ECO:0000313|EMBL:GAK68713.1}; TaxID=1220582 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Rhizobium rubi NBRC 13261.;"
binding-protein-dependent transport system inner membrane protein; K02072 D-methionine transport system permease protein
SCNpilot_expt_1000_bf_scaffold_2766_curated_13
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12673..13449
DNA (777bp) protein (259aa)
methionine ABC transporter substrate-binding protein n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI0002FA65E5
Dioxygenase {ECO:0000313|EMBL:KDP76701.1}; TaxID=106592 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens (Sinorhizobium morelense).;"
metQ; probabable D-methionine-binding lipoprotein metQ; K02073 D-methionine transport system substrate-binding protein
SCNpilot_expt_1000_bf_scaffold_2766_curated_14
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13557..14597
DNA (1041bp) protein (347aa)
L-threonine dehydratase catabolic TdcB {ECO:0000313|EMBL:EYR77399.1}; EC=4.3.1.19 {ECO:0000313|EMBL:EYR77399.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
pyridoxal-5'-phosphate-dependent protein subunit beta; K01754 threonine dehydratase [EC:4.3.1.19]
L-threonine dehydratase catabolic TdcB n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CX21_9RHIZ
SCNpilot_expt_1000_bf_scaffold_2766_curated_15
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14682..15797)
DNA (1116bp) protein (372aa)
Leu/Ile/Val-binding protein 1 n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CZZ2_9RHIZ
ABC-type branched-chain amino acid transport system periplasmic component {ECO:0000313|EMBL:EYR81545.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
extracellular ligand-binding receptor; K01999 branched-chain amino acid transport system substrate-binding protein
SCNpilot_expt_1000_bf_scaffold_2766_curated_16
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15859..16404)
DNA (546bp) protein (182aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D8P8_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EYR81546.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2766_curated_17
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16397..19204)
DNA (2808bp) protein (936aa)
Sarcosine oxidase subunit alpha {ECO:0000313|EMBL:EYR81547.1}; EC=1.5.3.1 {ECO:0000313|EMBL:EYR81547.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
sarcosine oxidase subunit alpha family protein; K00302 sarcosine oxidase, subunit alpha [EC:1.5.3.1]
Sarcosine oxidase subunit alpha n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D4C7_9RHIZ
SCNpilot_expt_1000_bf_scaffold_2766_curated_18
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19185..19469)
DNA (285bp) protein (95aa)
sarcosine oxidase subunit delta family protein; K00304 sarcosine oxidase, subunit delta [EC:1.5.3.1]
Sarcosine oxidase delta subunit n=1 Tax=Shinella zoogloeoides DD12 RepID=V5F030_9RHIZ
Sarcosine oxidase delta subunit {ECO:0000313|EMBL:EYR81548.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
SCNpilot_expt_1000_bf_scaffold_2766_curated_19
unknown

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comp(19479..19550)
DNA (72bp) protein (24aa)

This feature has no annotations

Displaying 19 items

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