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SCNpilot_expt_1000_bf_scaffold_2071_curated_18

Organism: scnpilot_dereplicated_Rhizobiales_12

near complete RP 44 / 55 MC: 2 BSCG 46 / 51 MC: 5 ASCG 10 / 38 MC: 2
Location: comp(18632..19120)

Top 3 Functional Annotations

Value Algorithm Source
Leucine-responsive regulatory protein Lrp n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CN04_9RHIZ similarity UNIREF
DB: UNIREF100
  • Identity: 82.5
  • Coverage: 160.0
  • Bit_score: 259
  • Evalue 3.20e-66
Leucine-responsive regulatory protein Lrp {ECO:0000313|EMBL:EYR83093.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 82.5
  • Coverage: 160.0
  • Bit_score: 259
  • Evalue 4.50e-66
putative transcriptional regulator; K15782 Lrp/AsnC family transcriptional regulator, regulator of ectoine-degradation genes similarity KEGG
DB: KEGG
  • Identity: 77.3
  • Coverage: 163.0
  • Bit_score: 250
  • Evalue 4.70e-64

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Taxonomy

Shinella sp. DD12 → Shinella → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 489
ATGAAACTCGACGCCATCGACCTGCGCATCCTCGAAGCCATCCAGGCGGACGGGCGCATCACCAAGCTGGCGCTGGCGGAAAAGGCGGGCCTTTCCCCCACTCCCTGCTGGCTCAGGCTGCGCAAGCTGGAAAAGGCCGGCATCGTCACCGGCTATCACGCCCGCGTCGCCATGCGGCGCCTTGCGCCAGTGGCCAGCGTGATGATGGAGGTGACGCTCGCCAACCATCGGCAGGCGGATTTCGAGCGCTTCGAAAAAGTCGTGGCGGCAACGCCCGAGATCGTCGCCTGCTGGTCGGTCGGCGGCGGTGTCGATTATATCCTGAAGATCATGGCGGCCGATATCGACGCCTATCAGCGCCTCGTCGACAGCATGCTCGACCGCGAACTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAAGGAGGAGATCGTTCTGCCGCTCGCGACCCTGCTCCCCTCCCCTAGTAGCGAAACCCGATAG
PROTEIN sequence
Length: 163
MKLDAIDLRILEAIQADGRITKLALAEKAGLSPTPCWLRLRKLEKAGIVTGYHARVAMRRLAPVASVMMEVTLANHRQADFERFEKVVAATPEIVACWSVGGGVDYILKIMAADIDAYQRLVDSMLDREXXXXXXXXXXXXXKEEIVLPLATLLPSPSSETR*