ggKbase home page

SCNpilot_expt_1000_bf_scaffold_4257_curated_10

Organism: scnpilot_dereplicated_Rhizobiales_12

near complete RP 44 / 55 MC: 2 BSCG 46 / 51 MC: 5 ASCG 10 / 38 MC: 2
Location: comp(8574..11072)

Top 3 Functional Annotations

Value Algorithm Source
ATP-dependent DNA ligase clustered with Ku protein, LigD {ECO:0000313|EMBL:KIV67229.1}; EC=6.5.1.1 {ECO:0000313|EMBL:KIV67229.1};; TaxID=1604021 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. UR51a.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 72.1
  • Coverage: 829.0
  • Bit_score: 1239
  • Evalue 0.0
ATP-dependent DNA ligase (EC:6.5.1.1); K01971 DNA ligase (ATP) [EC:6.5.1.1] similarity KEGG
DB: KEGG
  • Identity: 70.4
  • Coverage: 829.0
  • Bit_score: 1229
  • Evalue 0.0
ATP-dependent DNA ligase n=1 Tax=Agrobacterium tumefaciens CCNWGS0286 RepID=G6XUH1_RHIRD similarity UNIREF
DB: UNIREF100
  • Identity: 71.7
  • Coverage: 829.0
  • Bit_score: 1235
  • Evalue 0.0

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Rhizobium sp. UR51a → Rhizobium → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 2499
ATGGACGAGCTGAAGACCTACAACAGCAAGCGCCGTTTCGACCGCACGCCGGAACCGGAGGGCAAGCGGGCGGCAAGCGGCGGCTTCAGCTTCGTCATCCAGAAGCACGATGCCCGCCGGCTGCATTACGATTTCCGGCTGGAGCTGGACGGCGTGTTGAAAAGCTGGGCGGTGACGCGCGGCCCCAGCATCGATCCCGGCGAAAAGCGGCTTGCCGTGCATGTCGAGGACCATCCGCTCTCCTATGGCGATTTCGAGGGCGCCATTCCCAAGGGGCAATATGGCGGCGGCACCGTCATCGTCTGGGATCGCGGCACCTGGAAACCGCTGGAGGATCCGCACAGGGGCTATCGCAAGGGCCATCTCGAATTCGAGCTGGAGGGCGAAAAGCTGCATGGCCGCTGGCATCTGGTGCGCATGAAGGGCCGGGCCGAGGAAAAGCGCGACAACTGGCTGCTGATCAAGAGCGAGGACGAGGCCGCCGATCCCGATGGCGACATCCTGAAGAAGCTGCCGGATTCGGTGAAATCGGGCCGCTCCATCGAGGAGGTGGCGCGCGCGCCCGGCGATAGCTGGAATTCGCGGCCCGTCGGCAAGGCGGCAAAGGCGGCACCCGCCAGGGCGCGGAAACCGCAGGTGCATGACTGGCCGAAGGGCGCGCGCAAACGCAAGCTGCCGGATTTCCTGCCGCCGGCGCTCGCCACCCTGAAGCCCAGCCCGCCGCGCGGGGAAAAATGGCTGCACGAAATCAAGTTCGACGGCTATCGCCTGCAGGCCCGCATCGACCACGGCGCGGTGAGGCTGCTGACCCGCAGCGGCCTCGACTGGACCGCGAAATTCGGGGACGCCATCCTCGACGCCCTGAAGGCGCTGCCGGTTTCCGAAGCGCTGATCGATGGCGAGGTGGTGGTGGAAAAGGCCAGCGGCTCCTCCGATTTCTCGCTGCTGCAGCAGGATTTGAGCGAGGGCCGCAAGGATCGTTTCACCTTCTATGCCTTCGACCTGATGCATCTCGACGGGCACGATCTCTGCCCGTCGCCACTGGAGGAACGCAAGGCGCTGCTCGAAAAGCTGCTGCCTGCGGCCACGCCGGCCCTGCGCTACAGCGAGCATTTCGGCGAAAGCGGCGATCTCGTGCTCGAACATGCCTGCCGTCTCAGACTCGAAGGCGTGGTTTCCAAGGATCGAACCGGCAAATATGTGTCGGGGCGCAAGGGAAGCTGGGTCAAGTCGAAATGTTCCGAAAGGCAGGAACTGGTGATCGGCGGCTTCGCACCGTCCTCGGTCTCGCCGCATGCCATCGGCTCGCTGGCGCTCGGCGTCTTCGAAAAAGAGGGCCTGCGGCATGTGGGCCGGGTCGGCACCGGTTTTACCCAGGCGGTCGCCGAGCAGCTTTTCGAACGCCTTAATGCGTTGCGCCAGGACGAAAGCCCGTTCGCCGACAGGCTGACGGCGCTGGAGCGCCGCGATCTCGTCTATGTCAGGCCGGAGCTGATCGCGGAAATCGAGTTTCGCGGGTGGTCGGCGGATGGCAATCTGCGCCATGCCTCTTTTCGGGGCCTGCGCGAGGACAAGGAGGCCGGCGAGGTGAAGCGGGAGTCGCCAGAAACCATGGAAGCGAAGACGCCTGTGGCGCGCAGCTCGGTCAAGCTCAGTCATCCCGACCGCATCTATTGGCCGGAGGAGGGGGTCACCAAGCAGGGGCTTGCCGATTATTATGCCGAGGTCTGGCCGCTGATGGCGCCCTTCGTCGTCGACCGGCCGCTGGCGCTGCTGCGCTGCCCGGAAGGCATCGGCGGACAACGCTTCTTCCAGAAGCATGCCTGGCGCGGCATGAACAAGACCATCGCCCGCATCGCCGATCCCAAGGATAAGGGCGGCGAGCCGCTGGTGCGCATCCTCGATTTCGACGGCCTCATCGGACTGGTGCAGGCCGCCGTGCTCGAAATCCACCCCTGGGGCACGACCACGAAGACCTGGGAAAGCCCCGACATGATCACCCTCGACCTCGACCCCGGCGAGGACGTCGCCTGGAGCGCGGTGATCGAGGCGGCGCTGAAACTCAAGGAGAAGATCGAGGCCGCCGGTCTCGTGCCTTTCGTCAAGACCTCCGGCGGCAAGGGCCTGCATGTGGTCATTCCGCTGAAGCCGCAGGCGCGCTGGCCGGCGGTGAAGGCTTTCGCGAAGAAAATGGCCGAAACCCTGTCGCGCGAGGAGCCCGACCGCTATCTCTCCGTCGCCACCAAGGCGAAGCGCAACGGCCGCATCTTCATCGATTACCTGCGCAACGGCCGCGGCAACACCGCCGTCGCGCCCTATTCGACACGGGCGCGGCCGGGCGCGGCGGTCTCGATGCCGCTCGCCTGGAACGAGCTGACGGAGGAGATCGGCCCGACCAGCTTCACCGTCGAAAATGCCGGCCGGCGCATCGCCGCGCTCGAGCGCGATCCCTGGGGCGATTTCTTCGATTCCGCACGCCCTCTGCCGAAAGCGAAATGA
PROTEIN sequence
Length: 833
MDELKTYNSKRRFDRTPEPEGKRAASGGFSFVIQKHDARRLHYDFRLELDGVLKSWAVTRGPSIDPGEKRLAVHVEDHPLSYGDFEGAIPKGQYGGGTVIVWDRGTWKPLEDPHRGYRKGHLEFELEGEKLHGRWHLVRMKGRAEEKRDNWLLIKSEDEAADPDGDILKKLPDSVKSGRSIEEVARAPGDSWNSRPVGKAAKAAPARARKPQVHDWPKGARKRKLPDFLPPALATLKPSPPRGEKWLHEIKFDGYRLQARIDHGAVRLLTRSGLDWTAKFGDAILDALKALPVSEALIDGEVVVEKASGSSDFSLLQQDLSEGRKDRFTFYAFDLMHLDGHDLCPSPLEERKALLEKLLPAATPALRYSEHFGESGDLVLEHACRLRLEGVVSKDRTGKYVSGRKGSWVKSKCSERQELVIGGFAPSSVSPHAIGSLALGVFEKEGLRHVGRVGTGFTQAVAEQLFERLNALRQDESPFADRLTALERRDLVYVRPELIAEIEFRGWSADGNLRHASFRGLREDKEAGEVKRESPETMEAKTPVARSSVKLSHPDRIYWPEEGVTKQGLADYYAEVWPLMAPFVVDRPLALLRCPEGIGGQRFFQKHAWRGMNKTIARIADPKDKGGEPLVRILDFDGLIGLVQAAVLEIHPWGTTTKTWESPDMITLDLDPGEDVAWSAVIEAALKLKEKIEAAGLVPFVKTSGGKGLHVVIPLKPQARWPAVKAFAKKMAETLSREEPDRYLSVATKAKRNGRIFIDYLRNGRGNTAVAPYSTRARPGAAVSMPLAWNELTEEIGPTSFTVENAGRRIAALERDPWGDFFDSARPLPKAK*