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SCNpilot_expt_1000_bf_scaffold_4257_curated

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Displaying 16 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_4257_curated_1
Rhizobium sp. PDO1-076, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3..347)
DNA (345bp) protein (115aa)
Uncharacterized protein n=1 Tax=Rhizobium sp. PDO1-076 RepID=H4FAW9_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EHS50036.1}; TaxID=1125979 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. PDO1-076.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_4257_curated_2
Rhizobium sp. PDO1-076, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(419..1279)
DNA (861bp) protein (287aa)
hypothetical protein n=1 Tax=Martelella mediterranea RepID=UPI000375C382
Alcohol dehydrogenase zinc-binding domain protein {ECO:0000313|EMBL:EHS53120.1}; TaxID=1125979 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. PDO1-076.;"
Threonine dehydrogenase and related Zn-dependent dehydrogenase
SCNpilot_expt_1000_bf_scaffold_4257_curated_3
Agrobacterium albertimagni, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1582..2643
DNA (1062bp) protein (354aa)
GTP cyclohydrolase II {ECO:0000256|SAAS:SAAS00129532}; EC=3.5.4.25 {ECO:0000256|SAAS:SAAS00129532};; TaxID=1156935 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium albertimagni AOL15.;"
RibA; GTP cyclohydrolase II; K01497 GTP cyclohydrolase II [EC:3.5.4.25]
GTP cyclohydrolase n=1 Tax=Agrobacterium albertimagni AOL15 RepID=K2Q703_9RHIZ
SCNpilot_expt_1000_bf_scaffold_4257_curated_4
Martelella endophytica, Martelella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2662..3435
DNA (774bp) protein (258aa)
hypothetical protein n=1 Tax=Pannonibacter phragmitetus RepID=UPI000365D0C9
Uncharacterized protein {ECO:0000313|EMBL:AJY48092.1}; TaxID=1486262 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Aurantimonadaceae; Martelella.;" source="Martelella endophytica.;"
CDP-alcohol phosphatidyltransferase
SCNpilot_expt_1000_bf_scaffold_4257_curated_5
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3461..4621
DNA (1161bp) protein (387aa)
Sulfatase n=1 Tax=Rhizobium sp. PDO1-076 RepID=H4FAW3_9RHIZ
Strain MEJ076 contig_8, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ03429.1}; TaxID=358 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Rhizobium radiobacter (Agrobacterium tumefaciens) (Agrobacterium; radiobacter).;"
sulfatase
SCNpilot_expt_1000_bf_scaffold_4257_curated_6
Rhizobium sp., Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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4621..5073
DNA (453bp) protein (151aa)
Uncharacterized protein n=1 Tax=Rhizobium sp. RepID=L0NE42_RHISP
Uncharacterized protein {ECO:0000313|EMBL:CCF19071.1}; TaxID=391 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_4257_curated_7
unknown

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comp(5837..6016)
DNA (180bp) protein (60aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_4257_curated_8
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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6605..7645
DNA (1041bp) protein (347aa)
chemotaxis protein n=1 Tax=Rhizobium leguminosarum RepID=UPI00035F51B6
Methyl-accepting chemotaxis protein {ECO:0000313|EMBL:EJC70117.1}; Flags: Precursor;; TaxID=755176 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. viciae WSM1455.;"
methyl-accepting chemotaxis protein; K05874 methyl-accepting chemotaxis protein I, serine sensor receptor
SCNpilot_expt_1000_bf_scaffold_4257_curated_9
Rhizobium sp. CF142, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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7791..8573
DNA (783bp) protein (261aa)
Probable DNA repair protein PMI11_04307 n=1 Tax=Rhizobium sp. CF142 RepID=J2AV43_9RHIZ
Non-homologous end joining protein Ku {ECO:0000256|HAMAP-Rule:MF_01875}; Flags: Precursor;; TaxID=1144314 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF142.;"
ATP-dependent DNA helicase Ku-type protein
SCNpilot_expt_1000_bf_scaffold_4257_curated_10
Rhizobium sp. UR51a, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(8574..11072)
DNA (2499bp) protein (833aa)
ATP-dependent DNA ligase clustered with Ku protein, LigD {ECO:0000313|EMBL:KIV67229.1}; EC=6.5.1.1 {ECO:0000313|EMBL:KIV67229.1};; TaxID=1604021 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. UR51a.;"
ATP-dependent DNA ligase (EC:6.5.1.1); K01971 DNA ligase (ATP) [EC:6.5.1.1]
ATP-dependent DNA ligase n=1 Tax=Agrobacterium tumefaciens CCNWGS0286 RepID=G6XUH1_RHIRD
SCNpilot_expt_1000_bf_scaffold_4257_curated_11
Agrobacterium arsenijevicii, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(11076..11891)
DNA (816bp) protein (272aa)
DNA helicase n=1 Tax=Rhizobium leguminosarum RepID=UPI000380FF61
Non-homologous end joining protein Ku {ECO:0000256|HAMAP-Rule:MF_01875}; TaxID=1585697 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium sp. KFB 330.;"
putative DNA repair protein
SCNpilot_expt_1000_bf_scaffold_4257_curated_12
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(11908..12156)
DNA (249bp) protein (83aa)
hypothetical protein n=1 Tax=Rhizobium giardinii RepID=UPI000364F946
Uncharacterized protein {ECO:0000313|EMBL:CDN94620.1}; TaxID=358 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Rhizobium radiobacter (Agrobacterium tumefaciens) (Agrobacterium; radiobacter).;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_4257_curated_13
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12308..12925
DNA (618bp) protein (206aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CYQ3_9RHIZ
Transcriptional regulator XRE family {ECO:0000313|EMBL:EYR79311.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
cupin
SCNpilot_expt_1000_bf_scaffold_4257_curated_14
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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13676..14044
DNA (369bp) protein (123aa)
ABC transporter, binding protein component n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EVW3_9RHIZ
ABC transporter, binding protein component {ECO:0000313|EMBL:EYR79312.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
ABC transporter binding protein component; K02055 putative spermidine/putrescine transport system substrate-binding protein
SCNpilot_expt_1000_bf_scaffold_4257_curated_15
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14159..15025
DNA (867bp) protein (289aa)
Spermidine/putrescine transport system permease protein PotB n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CEH3_9RHIZ
Spermidine/putrescine transport system permease protein PotB {ECO:0000313|EMBL:EYR79313.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
binding-protein-dependent transport system inner membrane protein
SCNpilot_expt_1000_bf_scaffold_4257_curated_16
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15030..15812
DNA (783bp) protein (261aa)
ABC transporter, permease protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CUF1_9RHIZ
ABC transporter, permease protein {ECO:0000313|EMBL:EYR79314.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
binding-protein-dependent transport system inner membrane protein; K02053 putative spermidine/putrescine transport system permease protein
Displaying 16 items

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