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SCNpilot_cont_500_bf_scaffold_482_curated

Search features with annotation key words

Displaying items 61-90 of 107 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_500_bf_scaffold_482_curated_58
Bradyrhizobium sp. STM 3843, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(51427..52959)
-----------------
DNA (1533bp)
protein (511aa)
Putative propionyl-CoA carboxylase beta chain {ECO:0000313|EMBL:CCE09906.1}; EC=6.4.1.3 {ECO:0000313|EMBL:CCE09906.1};; TaxID=551947 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. STM 3843.;"
propionyl-CoA carboxylase; K01966 propionyl-CoA carboxylase beta chain [EC:6.4.1.3] rbh
methylmalonyl-CoA carboxyltransferase n=1 Tax=Bradyrhizobium japonicum RepID=UPI00037A3BFD
SCNpilot_cont_500_bf_scaffold_482_curated_59
Nitrobacter winogradskyi, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(52956..53927)
-----------------
DNA (972bp)
protein (324aa)
Putative uncharacterized protein n=1 Tax=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) RepID=Q3SPG2_NITWN
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABA05829.1}; TaxID=323098 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391).;"
SCNpilot_cont_500_bf_scaffold_482_curated_60
Caulobacter sp. AP07, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(54057..54332)
-----------------
DNA (276bp)
protein (92aa)
Uncharacterized protein n=1 Tax=Caulobacter sp. AP07 RepID=J3A5C1_9CAUL
Uncharacterized protein {ECO:0000313|EMBL:EJL26234.1}; TaxID=1144304 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter sp. AP07.;"
FlhB-like protein; K04061 flagellar biosynthesis protein
SCNpilot_cont_500_bf_scaffold_482_curated_61
Rhodovulum sp. PH10, Rhodovulum, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(54329..55342)
-----------------
DNA (1014bp)
protein (338aa)
Uncharacterized protein n=1 Tax=Rhodovulum sp. PH10 RepID=J9A0G4_9RHOB
Uncharacterized protein {ECO:0000313|EMBL:EJW09265.1}; TaxID=1187851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodovulum.;" source="Rhodovulum sp. PH10.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_482_curated_62
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(55412..56176)
-----------------
DNA (765bp)
protein (255aa)
Uncharacterized protein n=1 Tax=Rhodopseudomonas palustris (strain ATCC BAA-98 / CGA009) RepID=Q6N4X6_RHOPA
ATP12 ATPase
Uncharacterized protein {ECO:0000313|EMBL:CAE28648.1}; TaxID=258594 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain ATCC BAA-98 / CGA009).;"
SCNpilot_cont_500_bf_scaffold_482_curated_63
bacterium YEK0313, Bacteria

Not on your lists

comp(56169..56879)
-----------------
DNA (711bp)
protein (237aa)
HAD superfamily hydrolase; K01091 phosphoglycolate phosphatase [EC:3.1.3.18]
HAD family hydrolase n=1 Tax=Xanthobacteraceae RepID=UPI00037EFC73
Pyrophosphatase PpaX {ECO:0000313|EMBL:CEJ13240.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
SCNpilot_cont_500_bf_scaffold_482_curated_64
Afipia sp. P52-10, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

57146..58948
-----------------
DNA (1803bp)
protein (601aa)
NADPH-dependent glutamate synthase beta chain-like oxidoreductase n=1 Tax=Bradyrhizobium sp. WSM1253 RepID=I2QFH7_9BRAD
Glutamate synthase {ECO:0000313|EMBL:ETR75540.1}; TaxID=1429916 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. P52-10.;"
putative glutamate synthase small subunit
SCNpilot_cont_500_bf_scaffold_482_curated_65
Bradyrhizobium sp. WSM471, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

58918..60759
-----------------
DNA (1842bp)
protein (614aa)
ferredoxin oxidoreductase subunit alpha; K00174 2-oxoglutarate ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3] rbh
ferredoxin oxidoreductase n=1 Tax=Bradyrhizobium japonicum RepID=UPI0003780BB4
2-oxoacid:acceptor oxidoreductase, alpha subunit {ECO:0000313|EMBL:EHR05239.1}; TaxID=319017 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. WSM471.;"
SCNpilot_cont_500_bf_scaffold_482_curated_66
Bradyrhizobium sp. BTAi1, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

60786..61841
-----------------
DNA (1056bp)
protein (352aa)
2-oxoglutarate ferredoxin oxidoreductase subunit beta (EC:1.2.7.3); K00175 2-oxoglutarate ferredoxin oxidoreductase subunit beta [EC:1.2.7.3]
Putative 2-oxoglutarate synthase subunit B {ECO:0000313|EMBL:ABQ38227.1}; EC=1.2.7.3 {ECO:0000313|EMBL:ABQ38227.1};; TaxID=288000 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182).;"
Putative 2-oxoglutarate synthase subunit B n=1 Tax=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) RepID=A5EPY3_BRASB
SCNpilot_cont_500_bf_scaffold_482_curated_67
Mesorhizobium sp. LSHC420B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(61838..62332)
-----------------
DNA (495bp)
protein (165aa)
Uncharacterized protein n=1 Tax=Mesorhizobium sp. LSHC420B00 RepID=V7FBQ4_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:ESX66026.1}; TaxID=1287292 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSHC420B00.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_482_curated_68
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(62430..62966)
-----------------
DNA (537bp)
protein (179aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8P867_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS36984.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_482_curated_69
Mesorhizobium sp. LNJC391B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(62990..63430)
-----------------
DNA (441bp)
protein (147aa)
UPI0003CEE72F related cluster n=1 Tax=unknown RepID=UPI0003CEE72F
Activator of HSP90 ATPase {ECO:0000313|EMBL:ESY20956.1}; TaxID=1287273 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNJC391B00.;"
ArsR family toxin-antitoxin system, antitoxin component
SCNpilot_cont_500_bf_scaffold_482_curated_70
Mesorhizobium opportunistum, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(63481..63789)
-----------------
DNA (309bp)
protein (103aa)
Transcriptional regulator, ArsR family n=1 Tax=Mesorhizobium opportunistum (strain LMG 24607 / HAMBI 3007 / WSM2075) RepID=F7YB35_MESOW
ArsR family transcriptional regulator
Transcriptional regulator, ArsR family {ECO:0000313|EMBL:AEH85441.1}; TaxID=536019 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium opportunistum (strain LMG 24607 / HAMBI 3007 / WSM2075).;"
SCNpilot_cont_500_bf_scaffold_482_curated_71
unknown

Not on your lists

comp(63864..64316)
-----------------
DNA (453bp)
protein (151aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_482_curated_72
Rhodovulum sp. PH10, Rhodovulum, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(64321..65925)
-----------------
DNA (1605bp)
protein (535aa)
Pseudouridine synthase n=1 Tax=Rhodovulum sp. PH10 RepID=J6J914_9RHOB
Ribosomal large subunit pseudouridine synthase C {ECO:0000313|EMBL:EJW12230.1}; TaxID=1187851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodovulum.;" source="Rhodovulum sp. PH10.;"
ribosomal large subunit pseudouridine synthase C
SCNpilot_cont_500_bf_scaffold_482_curated_73
unknown

Not on your lists

comp(65951..66316)
-----------------
DNA (366bp)
protein (122aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_482_curated_74
Bradyrhizobium sp. ORS 285, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(66313..67650)
-----------------
DNA (1338bp)
protein (446aa)
Putative polynucleotide enzyme with nucleotide triphosphate hydrolase domain n=1 Tax=Bradyrhizobium sp. ORS 285 RepID=H0RP80_9BRAD
Putative polynucleotide enzyme with nucleotide triphosphate hydrolase domain {ECO:0000313|EMBL:CCD83757.1}; TaxID=115808 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. ORS 285.;"
rarA; recombination factor protein RarA; K07478 putative ATPase
SCNpilot_cont_500_bf_scaffold_482_curated_75
Bradyrhizobiaceae bacterium SG-6C, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(67668..69071)
-----------------
DNA (1404bp)
protein (468aa)
peptidase S1C Do; K01362 [EC:3.4.21.-] rbh
serine protease n=1 Tax=Afipia birgiae RepID=UPI0002DDF444
Serine protease MucD/AlgY {ECO:0000313|EMBL:EGP06736.1}; TaxID=709797 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae.;" source="Bradyrhizobiaceae bacterium SG-6C.;"
SCNpilot_cont_500_bf_scaffold_482_curated_76
Bradyrhizobium japonicum, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(69188..70030)
-----------------
DNA (843bp)
protein (281aa)
hypothetical protein n=1 Tax=Bradyrhizobium elkanii RepID=UPI0003741A69
Phosphomannomutase {ECO:0000313|EMBL:KGT74670.1}; TaxID=375 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium japonicum.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_482_curated_77
Oligotropha carboxidovorans, Oligotropha, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(70132..70755)
-----------------
DNA (624bp)
protein (208aa)
Ankyrin repeat protein n=3 Tax=Oligotropha carboxidovorans RepID=F8BIE6_OLICM
ankyrin
Ankyrin repeat protein {ECO:0000313|EMBL:AEI07004.1}; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
SCNpilot_cont_500_bf_scaffold_482_curated_78
Rhodovulum sp. PH10, Rhodovulum, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(70839..71267)
-----------------
DNA (429bp)
protein (143aa)
50S ribosomal protein L17 n=1 Tax=Rhodovulum sp. PH10 RepID=J6J923_9RHOB
50S ribosomal protein L17 {ECO:0000256|HAMAP-Rule:MF_01368, ECO:0000256|RuleBase:RU000661}; TaxID=1187851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodovulum.;" source="Rhodovulum sp. PH10.;"
50S ribosomal protein L17; K02879 large subunit ribosomal protein L17
SCNpilot_cont_500_bf_scaffold_482_curated_79
Bradyrhizobium oligotrophicum, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(71396..72427)
-----------------
DNA (1032bp)
protein (344aa)
DNA-directed RNA polymerase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; Short=RNAP subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_00059};; RNA polymerase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; Transcriptase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; TaxID=1245469 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium oligotrophicum S58.;"
DNA-directed RNA polymerase subunit alpha n=2 Tax=Bradyrhizobium RepID=M4Z9W0_9BRAD
DNA-directed RNA polymerase alpha chain
SCNpilot_cont_500_bf_scaffold_482_curated_80
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(72519..72917)
-----------------
DNA (399bp)
protein (133aa)
30S ribosomal protein S11 n=1 Tax=Methylobacterium RepID=UPI000381A167
30S ribosomal protein S11; K02948 small subunit ribosomal protein S11
30S ribosomal protein S11 {ECO:0000256|HAMAP-Rule:MF_01310}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
SCNpilot_cont_500_bf_scaffold_482_curated_81
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(72983..73357)
-----------------
DNA (375bp)
protein (125aa)
30S ribosomal protein S13 n=1 Tax=Afipia birgiae RepID=UPI0002DF70F4
rpsM; 30S ribosomal protein S13; K02952 small subunit ribosomal protein S13
30S ribosomal protein S13 {ECO:0000256|HAMAP-Rule:MF_01315}; TaxID=1035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis (Cat scratch disease bacillus).;"
SCNpilot_cont_500_bf_scaffold_482_curated_82
Afipia sp. P52-10, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(73569..74465)
-----------------
DNA (897bp)
protein (299aa)
Adenylate kinase {ECO:0000256|HAMAP-Rule:MF_00235, ECO:0000256|RuleBase:RU003331}; Short=AK {ECO:0000256|HAMAP-Rule:MF_00235};; EC=2.7.4.3 {ECO:0000256|HAMAP-Rule:MF_00235, ECO:0000256|RuleBase:RU003331};; ATP-AMP transphosphorylase {ECO:0000256|HAMAP-Rule:MF_00235}; ATP:AMP phosphotransferase {ECO:0000256|HAMAP-Rule:MF_00235}; Adenylate monophosphate kinase {ECO:0000256|HAMAP-Rule:MF_00235}; TaxID=1429916 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" sour
adk; adenylate kinase; K00939 adenylate kinase [EC:2.7.4.3]
Adenylate kinase n=1 Tax=Rhodopseudomonas palustris (strain HaA2) RepID=Q2IXN9_RHOP2
SCNpilot_cont_500_bf_scaffold_482_curated_83
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(74462..75793)
-----------------
DNA (1332bp)
protein (444aa)
Protein translocase subunit SecY n=2 Tax=Bradyrhizobiaceae RepID=F7QPX6_9BRAD
Protein translocase subunit SecY {ECO:0000256|HAMAP-Rule:MF_01465}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
preprotein translocase SECY subunit; K03076 preprotein translocase subunit SecY
SCNpilot_cont_500_bf_scaffold_482_curated_84
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(75834..76409)
-----------------
DNA (576bp)
protein (192aa)
50S ribosomal protein L15 n=1 Tax=Afipia birgiae RepID=UPI0002EE55E7
rplO; 50S ribosomal protein L15; K02876 large subunit ribosomal protein L15
50S ribosomal protein L15 {ECO:0000255|HAMAP-Rule:MF_01341}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCNpilot_cont_500_bf_scaffold_482_curated_85
Chelatococcus sp. BSN60, Chelatococcus, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(76543..76737)
-----------------
DNA (195bp)
protein (65aa)
50S ribosomal protein L30 n=1 Tax=Chelatococcus sp. BSN60 RepID=L0MXX1_9RHIZ
50S ribosomal protein L30 {ECO:0000256|HAMAP-Rule:MF_01371, ECO:0000256|SAAS:SAAS00082687}; TaxID=1095349 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Beijerinckiaceae; Chelatococcus.;" source="Chelatococcus sp. BSN60.;"
50S ribosomal subunit protein L30
SCNpilot_cont_500_bf_scaffold_482_curated_86
Bradyrhizobium oligotrophicum, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(76785..77351)
-----------------
DNA (567bp)
protein (189aa)
30S ribosomal protein S5 n=7 Tax=Bradyrhizobium RepID=RS5_BRASB
rpsE; 30S ribosomal protein S5; K02988 small subunit ribosomal protein S5
30S ribosomal protein S5 {ECO:0000256|HAMAP-Rule:MF_01307, ECO:0000256|SAAS:SAAS00085406}; TaxID=1245469 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium oligotrophicum S58.;"
SCNpilot_cont_500_bf_scaffold_482_curated_87
Rhodovulum sp. PH10, Rhodovulum, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(77369..77725)
-----------------
DNA (357bp)
protein (119aa)
50S ribosomal protein L18 n=1 Tax=Rhodovulum sp. PH10 RepID=J6UG19_9RHOB
50S ribosomal protein L18 {ECO:0000256|HAMAP-Rule:MF_01337}; TaxID=1187851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodovulum.;" source="Rhodovulum sp. PH10.;"
rplR; 50S ribosomal protein L18; K02881 large subunit ribosomal protein L18
Displaying items 61-90 of 107 in total

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