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SCNpilot_cont_500_bf_scaffold_482_curated

Search features with annotation key words

Displaying items 1-30 of 107 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_500_bf_scaffold_482_curated_1
Rhodovulum sp. PH10, Rhodovulum, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1..99)
DNA (99bp) protein (33aa)
Putative outer membrane protein n=1 Tax=Rhodovulum sp. PH10 RepID=J6J419_9RHOB
Putative outer membrane protein {ECO:0000313|EMBL:EJW11285.1}; TaxID=1187851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodovulum.;" source="Rhodovulum sp. PH10.;"
SCNpilot_cont_500_bf_scaffold_482_curated_2
delta proteobacterium MLMS-1, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(374..1576)
DNA (1203bp) protein (401aa)
Phage integrase n=1 Tax=delta proteobacterium MLMS-1 RepID=Q1NPW4_9DELT
Phage integrase {ECO:0000313|EMBL:EAT03747.1}; TaxID=262489 species="Bacteria; Proteobacteria; Deltaproteobacteria.;" source="delta proteobacterium MLMS-1.;"
integrase family protein
SCNpilot_cont_500_bf_scaffold_482_curated_trna_3
unknown

Not on your lists

comp(2048..2121)
DNA (74bp)
transferRNA
SCNpilot_cont_500_bf_scaffold_482_curated_3
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2201..2701)
DNA (501bp) protein (167aa)
Putative uncharacterized protein n=1 Tax=Rhodopseudomonas palustris (strain BisB5) RepID=Q137H8_RHOPS
hypothetical protein; K09005 hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABE39761.1}; Flags: Precursor;; TaxID=316057 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisB5).;"
SCNpilot_cont_500_bf_scaffold_482_curated_4
Rhodovulum sp. PH10, Rhodovulum, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2726..3307)
DNA (582bp) protein (194aa)
Cold shock protein CspB n=1 Tax=Rhodovulum sp. PH10 RepID=J5PCZ1_9RHOB
Cold shock protein CspB {ECO:0000313|EMBL:EJW09867.1}; TaxID=1187851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodovulum.;" source="Rhodovulum sp. PH10.;"
cold-shock DNA-binding domain-containing protein; K03704 cold shock protein (beta-ribbon, CspA family)
SCNpilot_cont_500_bf_scaffold_482_curated_5
Bradyrhizobium elkanii, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3491..4252)
DNA (762bp) protein (254aa)
NAD-dependent protein deacetylase {ECO:0000256|HAMAP-Rule:MF_01968}; EC=3.5.1.- {ECO:0000256|HAMAP-Rule:MF_01968};; Regulatory protein SIR2 homolog {ECO:0000256|HAMAP-Rule:MF_01968}; TaxID=29448 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium elkanii.;"
hypothetical protein; K12410 NAD-dependent deacetylase [EC:3.5.1.-]
NAD-dependent protein deacetylase n=1 Tax=Rhodovulum sp. PH10 RepID=J6L8Q6_9RHOB
SCNpilot_cont_500_bf_scaffold_482_curated_6
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4330..4788
DNA (459bp) protein (153aa)
glyoxalase/bleomycin resistance protein/dioxygenase; K01759 lactoylglutathione lyase [EC:4.4.1.5]
Lactoylglutathione lyase n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PJV4_9BRAD
Lactoylglutathione lyase {ECO:0000313|EMBL:CEG08148.1}; TaxID=1035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis (Cat scratch disease bacillus).;"
SCNpilot_cont_500_bf_scaffold_482_curated_trna_1
unknown

Not on your lists

4854..4925
DNA (72bp)
transferRNA
SCNpilot_cont_500_bf_scaffold_482_curated_7
unknown

Not on your lists

5081..5221
DNA (141bp) protein (47aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_482_curated_8
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5224..6279)
DNA (1056bp) protein (352aa)
lysine 2,3-aminomutase YodO family protein; K01843 lysine 2,3-aminomutase [EC:5.4.3.2]
Lysine 2,3-aminomutase YodO family protein {ECO:0000313|EMBL:ACF01303.1}; EC=5.4.3.2 {ECO:0000313|EMBL:ACF01303.1};; TaxID=395960 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain TIE-1).;"
Lysine 2,3-aminomutase YodO family protein n=1 Tax=Rhodopseudomonas palustris (strain TIE-1) RepID=B3QHV6_RHOPT
SCNpilot_cont_500_bf_scaffold_482_curated_9
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6318..7367)
DNA (1050bp) protein (350aa)
Putative lysyl-tRNA synthetase (Lysine--tRNA ligase) {ECO:0000313|EMBL:KFC75553.1}; EC=6.1.1.6 {ECO:0000313|EMBL:KFC75553.1};; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
lysine--tRNA ligase (EC:6.1.1.6); K04568 lysyl-tRNA synthetase, class II [EC:6.1.1.6]
Lysine--tRNA ligase n=1 Tax=Caulobacter sp. (strain K31) RepID=B0SUL5_CAUSK
SCNpilot_cont_500_bf_scaffold_482_curated_10
Starkeya novella, Starkeya, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7491..8057
DNA (567bp) protein (189aa)
Elongation factor P n=1 Tax=Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIB 9113) RepID=D7AAC7_STAND
translation elongation factor P; K02356 elongation factor P
Elongation factor P {ECO:0000256|HAMAP-Rule:MF_00141}; Short=EF-P {ECO:0000256|HAMAP-Rule:MF_00141};; TaxID=639283 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Starkeya.;" source="Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 /; NBRC 12443 / NCIB 9113).;"
SCNpilot_cont_500_bf_scaffold_482_curated_11
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8116..9777
DNA (1662bp) protein (554aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PDZ1_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS39756.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
peptidase M23B
SCNpilot_cont_500_bf_scaffold_482_curated_12
Rhodomicrobium udaipurense, Rhodomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9871..11118
DNA (1248bp) protein (416aa)
Lytic murein transglycosylase n=1 Tax=Rhodomicrobium vannielii (strain ATCC 17100 / ATH 3.1.1 / DSM 162 / LMG 4299) RepID=E3I1V9_RHOVT
lytic murein transglycosylase
Lytic transglycosylase {ECO:0000313|EMBL:KAI95695.1}; TaxID=858455 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Rhodomicrobium.;" source="Rhodomicrobium udaipurense JA643.;"
SCNpilot_cont_500_bf_scaffold_482_curated_13
Rubellimicrobium thermophilum, Rubellimicrobium, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11138..12076)
DNA (939bp) protein (313aa)
Transcriptional regulator n=1 Tax=Rubellimicrobium thermophilum DSM 16684 RepID=S9S9E5_9RHOB
Transcriptional regulator {ECO:0000313|EMBL:EPX82889.1}; TaxID=1123069 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rubellimicrobium.;" source="Rubellimicrobium thermophilum DSM 16684.;"
LysR family transcriptional regulator
SCNpilot_cont_500_bf_scaffold_482_curated_14
Rhizobium sp. AP16, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12218..13990
DNA (1773bp) protein (591aa)
Thiamine pyrophosphate-dependent enzyme, possible carboligase or decarboxylase n=1 Tax=Rhizobium sp. AP16 RepID=J2DDR9_9RHIZ
Thiamine pyrophosphate-dependent enzyme, possible carboligase or decarboxylase {ECO:0000313|EMBL:EJK88069.1}; TaxID=1144306 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. AP16.;"
ilvG; acetolactate synthase II
SCNpilot_cont_500_bf_scaffold_482_curated_15
Aurantimonas manganoxydans, Aurantimonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14028..14891
DNA (864bp) protein (288aa)
Putative ATP-binding protein, ABC-type nitrate/sulfonate/taurine/bicarbonate transporter n=1 Tax=Manganese-oxidizing bacterium (strain SI85-9A1) RepID=Q1YKX7_MOBAS
Putative ATP-binding protein, ABC-type nitrate/sulfonate/taurine/bicarbonate transporter {ECO:0000313|EMBL:EAS50396.1}; TaxID=287752 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Aurantimonadaceae; Aurantimonas.;" source="Manganese-oxidizing bacterium (strain SI85-9A1).;"
amino acid ABC transporter; K02049 NitT/TauT family transport system ATP-binding protein
SCNpilot_cont_500_bf_scaffold_482_curated_16
Aurantimonas manganoxydans, Aurantimonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14888..15655
DNA (768bp) protein (256aa)
Possible permease protein, ABC-type transporter n=1 Tax=Manganese-oxidizing bacterium (strain SI85-9A1) RepID=Q1YKX6_MOBAS
Possible permease protein, ABC-type transporter {ECO:0000313|EMBL:EAS50397.1}; TaxID=287752 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Aurantimonadaceae; Aurantimonas.;" source="Manganese-oxidizing bacterium (strain SI85-9A1).;"
aliphatic sulphonate ABC transporter
SCNpilot_cont_500_bf_scaffold_482_curated_17
Rhizobium sp. CF080, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15634..16428
DNA (795bp) protein (265aa)
ABC-type nitrate/sulfonate/bicarbonate transport system, permease component n=1 Tax=Rhizobium sp. CF080 RepID=J3BBD4_9RHIZ
ABC-type transporter, integral membrane subunit {ECO:0000313|EMBL:EUB99158.1}; TaxID=1144310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF080.;"
tauC; taurine uptake ABC transporter; K02050 NitT/TauT family transport system permease protein
SCNpilot_cont_500_bf_scaffold_482_curated_18
Bradyrhizobiaceae bacterium SG-6C, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16786..17223)
DNA (438bp) protein (146aa)
Putative uncharacterized protein n=1 Tax=Bradyrhizobiaceae bacterium SG-6C RepID=F7QP75_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EGP07158.1}; TaxID=709797 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae.;" source="Bradyrhizobiaceae bacterium SG-6C.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_482_curated_19
bacterium YEK0313, Bacteria

Not on your lists

comp(17234..19210)
DNA (1977bp) protein (659aa)
carbamoyl-phosphate synthase L chain ATP-binding; K01968 3-methylcrotonyl-CoA carboxylase alpha subunit [EC:6.4.1.4]
Acetyl/propionyl-CoA carboxylase, alpha subunit n=1 Tax=Microvirga sp. WSM3557 RepID=I4YL97_9RHIZ
Acetyl-/propionyl-coenzyme A carboxylase alpha chain {ECO:0000313|EMBL:CEJ13554.1}; Flags: Precursor;; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
SCNpilot_cont_500_bf_scaffold_482_curated_20
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19235..20053)
DNA (819bp) protein (273aa)
Uncharacterized protein n=1 Tax=Afipia felis ATCC 53690 RepID=K8NJX9_AFIFE
Uncharacterized protein {ECO:0000313|EMBL:EKS27860.1}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53690.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_482_curated_21
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20091..21071)
DNA (981bp) protein (327aa)
hypothetical protein n=1 Tax=Limnohabitans sp. Rim28 RepID=UPI00031A6BC6
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated
SCNpilot_cont_500_bf_scaffold_482_curated_22
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21274..21876)
DNA (603bp) protein (201aa)
Uncharacterized protein n=1 Tax=Rhodopseudomonas palustris (strain BisA53) RepID=Q07L36_RHOP5
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABJ07348.1}; TaxID=316055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisA53).;"
SCNpilot_cont_500_bf_scaffold_482_curated_23
unknown

Not on your lists

22054..22254
DNA (201bp) protein (67aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_482_curated_24
Microvirga lotononidis, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22563..24170)
DNA (1608bp) protein (536aa)
carboxyl transferase (EC:6.4.1.3); K01969 3-methylcrotonyl-CoA carboxylase beta subunit [EC:6.4.1.4]
Acetyl-CoA carboxylase, carboxyltransferase component (Subunits alpha and beta) n=1 Tax=Microvirga sp. WSM3557 RepID=I4YKQ1_9RHIZ
Acetyl-CoA carboxylase, carboxyltransferase component (Subunits alpha and beta) {ECO:0000313|EMBL:EIM24543.1}; TaxID=864069 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga lotononidis.;"
SCNpilot_cont_500_bf_scaffold_482_curated_25
Rhodovulum sp. PH10, Rhodovulum, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24250..24978)
DNA (729bp) protein (243aa)
glutathione S-transferase (GST) (EC:2.5.1.18); K04097 glutathione S-transferase [EC:2.5.1.18]
Glutathione S-transferase n=1 Tax=Rhodovulum sp. PH10 RepID=J5PE52_9RHOB
Glutathione S-transferase {ECO:0000313|EMBL:EJW10087.1}; TaxID=1187851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodovulum.;" source="Rhodovulum sp. PH10.;"
SCNpilot_cont_500_bf_scaffold_482_curated_26
bacterium YEK0313, Bacteria

Not on your lists

comp(25092..25499)
DNA (408bp) protein (136aa)
Uncharacterized protein n=1 Tax=Rhodovulum sp. PH10 RepID=J6IXY9_9RHOB
Thiosulfate sulfurtransferase GlpE {ECO:0000313|EMBL:CEJ13559.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
rhodanese domain-containing protein
SCNpilot_cont_500_bf_scaffold_482_curated_27
Rhodovulum sp. PH10, Rhodovulum, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25654..26370
DNA (717bp) protein (239aa)
Uncharacterized protein n=1 Tax=Rhodovulum sp. PH10 RepID=J6UBL8_9RHOB
Uncharacterized protein {ECO:0000313|EMBL:EJW10084.1}; TaxID=1187851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodovulum.;" source="Rhodovulum sp. PH10.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_482_curated_28
unknown

Not on your lists

comp(26393..26581)
DNA (189bp) protein (63aa)

This feature has no annotations

Displaying items 1-30 of 107 in total

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